Wall clock time and date at job start Mon Mar 30 2020 00:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47215 * 2 1 4 4 C 1.52998 * 109.46835 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47690 * 304.99938 * 4 3 2 6 6 C 1.52999 * 109.46853 * 65.00579 * 4 3 2 7 7 C 1.53005 * 109.46814 * 184.99966 * 4 3 2 8 8 C 1.50697 * 109.47149 * 175.00554 * 7 4 3 9 9 O 1.21287 * 119.99830 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00068 * 180.02562 * 8 7 4 11 11 C 1.46498 * 120.00179 * 179.97438 * 10 8 7 12 12 H 1.09000 * 110.64030 * 36.68303 * 11 10 8 13 13 C 1.55154 * 110.87454 * 159.93416 * 11 10 8 14 14 C 1.55137 * 101.48430 * 82.76713 * 13 11 10 15 15 N 1.47425 * 104.72129 * 37.29764 * 14 13 11 16 16 C 1.36932 * 125.64896 * 155.81436 * 15 14 13 17 17 H 1.07999 * 120.00109 * 194.55989 * 16 15 14 18 18 C 1.38813 * 119.99842 * 14.56765 * 16 15 14 19 19 N 1.31623 * 119.99583 * 203.65448 * 18 16 15 20 20 Si 1.86792 * 120.00042 * 23.65532 * 18 16 15 21 21 H 1.48500 * 109.47223 * 269.99897 * 20 18 16 22 22 H 1.48504 * 109.47280 * 30.00135 * 20 18 16 23 23 H 1.48507 * 109.47300 * 150.00206 * 20 18 16 24 24 C 1.47026 * 108.70205 * 335.55060 * 15 14 13 25 25 H 1.08993 * 109.47045 * 59.99893 * 1 2 3 26 26 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46758 * 299.99844 * 1 2 3 28 28 H 1.08999 * 109.46758 * 240.00156 * 2 1 3 29 29 H 1.09007 * 109.47048 * 120.00180 * 2 1 3 30 30 H 1.08998 * 109.46787 * 59.99688 * 3 2 1 31 31 H 1.09001 * 109.46884 * 299.99892 * 3 2 1 32 32 H 1.08999 * 109.47207 * 299.99344 * 6 4 3 33 33 H 1.08993 * 109.47840 * 59.99662 * 6 4 3 34 34 H 1.09001 * 109.47021 * 179.97438 * 6 4 3 35 35 H 1.08997 * 109.47167 * 55.00235 * 7 4 3 36 36 H 1.09006 * 109.47126 * 295.00209 * 7 4 3 37 37 H 0.97000 * 120.00077 * 0.02562 * 10 8 7 38 38 H 1.08994 * 111.00768 * 201.00525 * 13 11 10 39 39 H 1.08999 * 111.00376 * 324.86308 * 13 11 10 40 40 H 1.08999 * 110.49481 * 278.45643 * 14 13 11 41 41 H 1.08997 * 110.34065 * 156.05714 * 14 13 11 42 42 H 0.96995 * 120.00397 * 354.69623 * 19 18 16 43 43 H 1.09007 * 109.88116 * 120.70754 * 24 15 14 44 44 H 1.08995 * 109.88334 * 241.71659 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8531 0.8426 6 6 4.0805 0.8327 -1.3065 7 6 4.0801 2.8795 0.1264 8 6 5.5819 2.8705 0.2504 9 8 6.1849 1.8182 0.2398 10 7 6.2548 4.0317 0.3741 11 6 7.7147 4.0229 0.4953 12 1 8.1472 3.2393 -0.1269 13 6 8.3085 5.4079 0.1255 14 6 8.1336 6.1844 1.4571 15 7 8.4032 5.1882 2.5099 16 6 8.8239 5.4664 3.7829 17 1 9.2178 4.6771 4.4061 18 6 8.7440 6.7628 4.2726 19 7 9.5320 7.1448 5.2552 20 14 7.5183 7.9651 3.5369 21 1 8.1551 8.6946 2.4111 22 1 6.3338 7.2213 3.0379 23 1 7.0914 8.9354 4.5770 24 6 8.1393 3.8470 1.9685 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7172 -0.1911 -1.3961 33 1 3.7176 1.4220 -2.1485 34 1 5.1705 0.8330 -1.3062 35 1 3.6451 3.3432 1.0117 36 1 3.7920 3.4460 -0.7592 37 1 5.7724 4.8732 0.3837 38 1 9.3607 5.3222 -0.1454 39 1 7.7372 5.8765 -0.6759 40 1 7.1160 6.5647 1.5463 41 1 8.8518 7.0022 1.5159 42 1 10.1136 6.5010 5.6888 43 1 9.0434 3.2404 2.0238 44 1 7.3382 3.3703 2.5332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494696371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:55 Heat of formation + Delta-G solvation = -63.047626 kcal Electronic energy + Delta-G solvation = -21005.470220 eV Core-core repulsion = 17956.439774 eV Total energy + Delta-G solvation = -3049.030446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13286 -39.30720 -37.53754 -35.54360 -34.01787 -33.51113 -31.27039 -29.88466 -28.46484 -27.42411 -25.81159 -23.31945 -22.60552 -21.81287 -21.19168 -20.72163 -19.56402 -18.09065 -17.34340 -16.94393 -16.58202 -16.09425 -15.91063 -15.48870 -15.30456 -15.00651 -14.66105 -14.46425 -14.18716 -13.75297 -13.67095 -13.16385 -13.05964 -12.89637 -12.85449 -12.64194 -12.49645 -12.35798 -12.30978 -11.80010 -11.76849 -11.63708 -11.54137 -11.46653 -11.25795 -11.23164 -10.69984 -10.64083 -10.06664 -9.16905 -8.65364 -5.48979 1.40009 1.55204 1.71227 1.71758 2.25479 2.53755 3.05618 3.34140 3.62653 3.80182 3.82031 3.87061 4.00306 4.18247 4.28043 4.30354 4.40805 4.45112 4.53601 4.60582 4.72816 4.76932 4.78136 4.82590 4.89873 4.92660 4.96426 4.96978 5.01055 5.07845 5.17940 5.22229 5.27639 5.33083 5.45136 5.53959 5.54994 5.59108 5.65822 6.08572 6.62853 6.81824 7.33710 7.44396 8.10653 8.81640 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.003911 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.429445 B = 7157.801488 C = 7543.879456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.075 4.075 5 H 0.050 0.950 6 C -0.149 4.149 7 C -0.131 4.131 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.711 5.711 11 C 0.146 3.854 12 H 0.098 0.902 13 C -0.118 4.118 14 C 0.092 3.908 15 N -0.626 5.626 16 C -0.323 4.323 17 H 0.030 0.970 18 C -0.079 4.079 19 N -0.957 5.957 20 Si 1.113 2.887 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.308 1.308 24 C 0.125 3.875 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.412 0.588 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.245 0.755 43 H 0.018 0.982 44 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 -7.538 -18.176 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.094 4.094 5 H 0.068 0.932 6 C -0.206 4.206 7 C -0.171 4.171 8 C 0.297 3.703 9 O -0.459 6.459 10 N -0.363 5.363 11 C 0.040 3.960 12 H 0.116 0.884 13 C -0.156 4.156 14 C -0.032 4.032 15 N -0.354 5.354 16 C -0.452 4.452 17 H 0.048 0.952 18 C -0.272 4.272 19 N -0.600 5.600 20 Si 0.937 3.063 21 H -0.189 1.189 22 H -0.184 1.184 23 H -0.236 1.236 24 C -0.002 4.002 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.249 0.751 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -18.042 -6.749 -18.058 26.404 hybrid contribution 1.164 -1.653 1.172 2.336 sum -16.878 -8.401 -16.886 25.310 Atomic orbital electron populations 1.21765 0.95152 1.01809 1.02084 1.21584 0.96327 0.96910 1.01760 1.21631 0.92918 0.97196 1.02856 1.20866 0.95804 0.94063 0.98651 0.93187 1.21923 1.01240 1.00792 0.96613 1.21827 0.89049 1.00055 1.06149 1.21398 0.91592 0.82911 0.74445 1.90650 1.71511 1.32150 1.51560 1.45990 1.06798 1.09711 1.73834 1.21665 0.81106 0.99357 0.93862 0.88374 1.23045 1.02818 0.93144 0.96615 1.22323 0.98893 0.93302 0.88640 1.44865 1.79658 1.02207 1.08661 1.19899 1.37939 0.96276 0.91073 0.95221 1.27420 1.01705 0.99211 0.98888 1.71030 1.24812 1.34903 1.29259 0.83272 0.75001 0.73355 0.74655 1.18895 1.18422 1.23633 1.21806 0.96504 0.87398 0.94485 0.92099 0.92662 0.92755 0.91754 0.93138 0.91590 0.90425 0.92525 0.91808 0.93504 0.87653 0.85916 0.75148 0.89085 0.86276 0.93756 0.93387 0.94543 0.96356 0.97260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.13 -1.84 5.69 30.60 0.17 -1.67 16 3 C -0.11 -1.53 4.68 30.59 0.14 -1.38 16 4 C -0.07 -1.42 2.04 -10.79 -0.02 -1.45 16 5 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 6 C -0.15 -2.90 8.69 71.98 0.63 -2.28 16 7 C -0.13 -2.34 5.17 29.85 0.15 -2.18 16 8 C 0.51 13.57 7.54 87.66 0.66 14.23 16 9 O -0.58 -20.15 13.69 -3.05 -0.04 -20.19 16 10 N -0.71 -18.37 5.12 -436.92 -2.24 -20.60 16 11 C 0.15 4.54 3.24 46.18 0.15 4.69 16 12 H 0.10 3.01 7.69 -2.39 -0.02 2.99 16 13 C -0.12 -3.25 6.66 32.07 0.21 -3.04 16 14 C 0.09 3.57 4.69 86.94 0.41 3.98 16 15 N -0.63 -30.74 3.25 -691.53 -2.25 -32.98 16 16 C -0.32 -19.40 10.44 84.03 0.88 -18.52 16 17 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 18 C -0.08 -4.76 5.43 84.86 0.46 -4.30 16 19 N -0.96 -62.36 13.70 21.65 0.30 -62.06 16 20 Si 1.11 51.89 24.69 68.60 1.69 53.59 16 21 H -0.26 -10.97 6.66 99.48 0.66 -10.31 16 22 H -0.26 -10.70 6.22 99.48 0.62 -10.08 16 23 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 24 C 0.12 5.34 6.98 86.73 0.61 5.94 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.92 6.57 -2.39 -0.02 0.90 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.03 6.57 -2.39 -0.02 1.02 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.20 5.95 -2.39 -0.01 1.18 16 35 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.41 8.45 8.63 -92.71 -0.80 7.66 16 38 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.04 1.61 5.50 -2.39 -0.01 1.59 16 41 H 0.05 2.00 6.38 -2.39 -0.02 1.99 16 42 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 43 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.01 0.43 8.05 -2.39 -0.02 0.42 16 Total: -1.00 -76.10 339.38 2.62 -73.48 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.01 Total: 15.84 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.16 Total: -7.06 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -4.19 Total: -115.65 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.04 Total: -20.19 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 1.69 Total: 53.59 kcal Total: -76.10 2.62 -73.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494696371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.431 kcal (2) G-P(sol) polarization free energy of solvation -76.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds