Wall clock time and date at job start Mon Mar 30 2020 00:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.52997 * 109.47193 * 119.99920 * 2 1 3 5 5 H 1.09002 * 115.55396 * 274.33458 * 4 2 1 6 6 C 1.53002 * 117.49784 * 128.62290 * 4 2 1 7 7 C 1.52998 * 60.00049 * 252.50878 * 6 4 2 8 8 H 1.09005 * 117.50038 * 107.48830 * 7 6 4 9 9 C 1.50700 * 117.52059 * 252.51749 * 7 6 4 10 10 O 1.21281 * 120.00022 * 68.72095 * 9 7 6 11 11 N 1.34780 * 120.00044 * 248.71543 * 9 7 6 12 12 C 1.46495 * 120.00077 * 0.02562 * 11 9 7 13 13 C 1.46500 * 119.99796 * 180.02562 * 11 9 7 14 14 C 1.52998 * 109.47368 * 90.00117 * 13 11 9 15 15 N 1.46493 * 109.47147 * 179.97438 * 14 13 11 16 16 C 1.46509 * 119.99953 * 269.99880 * 15 14 13 17 17 C 1.36937 * 120.00190 * 89.99965 * 15 14 13 18 18 H 1.07996 * 119.99804 * 20.35998 * 17 15 14 19 19 C 1.38818 * 120.00196 * 200.36292 * 17 15 14 20 20 N 1.31622 * 119.99629 * 14.98349 * 19 17 15 21 21 Si 1.86796 * 119.99802 * 194.98696 * 19 17 15 22 22 H 1.48506 * 109.47207 * 85.00356 * 21 19 17 23 23 H 1.48501 * 109.46867 * 205.00040 * 21 19 17 24 24 H 1.48497 * 109.47298 * 325.00000 * 21 19 17 25 25 H 1.08998 * 109.47528 * 299.99968 * 1 2 3 26 26 H 1.08993 * 109.47408 * 59.99906 * 1 2 3 27 27 H 1.09004 * 109.47356 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47528 * 240.00032 * 2 1 3 29 29 H 1.09001 * 109.47367 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47292 * 300.00380 * 3 2 1 31 31 H 1.09001 * 109.47283 * 60.00042 * 3 2 1 32 32 H 1.09011 * 117.49503 * 145.02475 * 6 4 2 33 33 H 1.08989 * 117.50178 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.47572 * 89.99654 * 12 11 9 35 35 H 1.08996 * 109.47585 * 209.99975 * 12 11 9 36 36 H 1.09005 * 109.47282 * 330.00051 * 12 11 9 37 37 H 1.09005 * 109.46850 * 210.00020 * 13 11 9 38 38 H 1.09002 * 109.47423 * 329.99629 * 13 11 9 39 39 H 1.09005 * 109.47056 * 299.99777 * 14 13 11 40 40 H 1.09002 * 109.47138 * 59.99948 * 14 13 11 41 41 H 1.09000 * 109.46919 * 95.10105 * 16 15 14 42 42 H 1.09000 * 109.47001 * 215.09762 * 16 15 14 43 43 H 1.08994 * 109.46670 * 335.09589 * 16 15 14 44 44 H 0.96999 * 119.99196 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1266 -0.1060 2.1449 6 6 3.0741 -1.8313 1.0513 7 6 1.6358 -2.1852 1.4343 8 1 1.0064 -2.6345 0.6660 9 6 1.3879 -2.6662 2.8408 10 8 1.5095 -1.9009 3.7737 11 7 1.0310 -3.9470 3.0620 12 6 0.8846 -4.8716 1.9351 13 6 0.7895 -4.4144 4.4292 14 6 -0.6845 -4.2106 4.7851 15 7 -0.9260 -4.6785 6.1521 16 6 -1.3141 -6.0708 6.3919 17 6 -0.7891 -3.8147 7.2058 18 1 -0.8310 -2.7485 7.0389 19 6 -0.5962 -4.3094 8.4884 20 7 -0.2520 -5.5677 8.6635 21 14 -0.8254 -3.1894 9.9657 22 1 -2.2605 -3.1597 10.3464 23 1 -0.0217 -3.7015 11.1045 24 1 -0.3763 -1.8167 9.6205 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8416 -1.9465 1.8169 33 1 3.3914 -2.0475 0.0313 34 1 1.8385 -5.3621 1.7412 35 1 0.1324 -5.6226 2.1767 36 1 0.5739 -4.3181 1.0489 37 1 1.0374 -5.4735 4.5002 38 1 1.4122 -3.8484 5.1221 39 1 -0.9323 -3.1514 4.7141 40 1 -1.3071 -4.7767 4.0923 41 1 -0.4274 -6.6598 6.6264 42 1 -2.0112 -6.1146 7.2288 43 1 -1.7924 -6.4735 5.4992 44 1 -0.1176 -5.9134 9.5598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496812017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:15 Heat of formation + Delta-G solvation = 4.016181 kcal Electronic energy + Delta-G solvation = -21023.722323 eV Core-core repulsion = 17977.599981 eV Total energy + Delta-G solvation = -3046.122341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.00011 -37.68704 -35.91435 -34.78268 -33.41590 -31.38714 -28.73866 -27.33274 -26.42638 -25.83631 -24.75139 -23.04590 -22.42937 -20.45653 -19.88946 -18.66387 -17.06897 -16.62275 -15.92908 -15.41621 -14.83156 -14.70205 -14.39478 -13.86842 -13.50668 -13.28339 -13.16380 -12.97826 -12.70020 -12.45860 -12.38661 -12.31939 -12.23189 -11.76512 -11.44468 -11.31112 -11.24630 -10.84557 -10.80930 -10.77408 -10.46825 -10.31277 -10.14146 -10.03591 -9.86526 -9.72305 -9.39650 -8.56565 -8.28254 -6.72117 -5.67084 -3.09927 2.77051 3.28690 3.45886 3.50858 3.54056 3.81981 4.41233 4.59102 4.66187 4.68862 4.89348 4.98778 5.11094 5.18454 5.30854 5.44368 5.46889 5.50209 5.52682 5.57565 5.70313 5.71432 5.73031 5.73413 5.85653 5.90875 5.94427 6.02784 6.14448 6.29205 6.31977 6.33351 6.67986 6.74522 6.83114 7.10820 7.39829 7.73535 7.76661 7.90555 8.44611 8.56615 9.30116 9.92762 10.39939 11.38662 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.004124 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.140519 B = 6788.376715 C = 7410.441267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.116 4.116 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.185 4.185 8 H 0.121 0.879 9 C 0.535 3.465 10 O -0.534 6.534 11 N -0.610 5.610 12 C 0.081 3.919 13 C 0.093 3.907 14 C 0.145 3.855 15 N -0.599 5.599 16 C 0.163 3.837 17 C -0.251 4.251 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.029 0.971 42 H 0.044 0.956 43 H -0.003 1.003 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.875 5.196 -20.668 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.202 4.202 4 C -0.134 4.134 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.206 4.206 8 H 0.139 0.861 9 C 0.322 3.678 10 O -0.410 6.410 11 N -0.344 5.344 12 C -0.063 4.063 13 C -0.031 4.031 14 C 0.016 3.984 15 N -0.322 5.322 16 C 0.018 3.982 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.198 4.198 20 N -0.556 5.556 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.940 5.479 -19.971 21.080 hybrid contribution -0.035 0.194 0.834 0.857 sum 3.905 5.673 -19.137 20.339 Atomic orbital electron populations 1.21825 0.94810 1.01963 1.01816 1.20724 0.95878 0.96072 0.95691 1.21804 1.01071 0.95460 1.01849 1.22469 1.01175 0.89571 1.00213 0.86471 1.23042 0.90788 1.02356 1.02544 1.22334 1.00890 1.00883 0.96526 0.86122 1.19610 0.76846 0.81911 0.89424 1.90725 1.51542 1.54180 1.44594 1.47995 1.68100 1.09756 1.08521 1.21750 1.01464 0.93853 0.89193 1.22609 1.01278 0.99200 0.80023 1.21099 0.92170 0.98286 0.86843 1.43997 1.78560 1.08837 1.00824 1.20822 0.98013 0.84076 0.95281 1.19286 1.43316 0.89389 0.86030 0.91137 1.24959 1.00226 0.96485 0.98104 1.70086 1.50783 1.13962 1.20776 0.86254 0.77617 0.80187 0.82468 1.21493 1.21772 1.20446 0.92264 0.92799 0.92652 0.91237 0.92562 0.92712 0.92367 0.88415 0.88126 0.92999 0.91055 0.91512 0.91508 0.89761 0.93551 0.94710 0.95267 0.93710 0.98457 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.03 37.15 0.34 -0.99 16 2 C -0.07 -0.58 3.07 -90.62 -0.28 -0.86 16 3 C -0.14 -1.17 9.18 37.16 0.34 -0.83 16 4 C -0.12 -1.31 4.66 -90.62 -0.42 -1.73 16 5 H 0.12 1.61 7.64 -51.93 -0.40 1.22 16 6 C -0.15 -1.54 9.88 -26.73 -0.26 -1.81 16 7 C -0.19 -2.24 4.49 -91.77 -0.41 -2.65 16 8 H 0.12 1.19 5.91 -51.93 -0.31 0.88 16 9 C 0.53 9.10 7.46 -10.98 -0.08 9.02 16 10 O -0.53 -11.60 15.84 5.56 0.09 -11.51 16 11 N -0.61 -9.91 2.87 -181.57 -0.52 -10.43 16 12 C 0.08 0.91 10.27 59.84 0.61 1.52 16 13 C 0.09 1.88 5.73 -4.04 -0.02 1.86 16 14 C 0.14 3.19 6.03 -4.05 -0.02 3.16 16 15 N -0.60 -15.78 2.93 -181.12 -0.53 -16.31 16 16 C 0.16 4.09 9.02 59.85 0.54 4.63 16 17 C -0.25 -7.29 9.68 -15.06 -0.15 -7.43 16 18 H 0.07 2.07 7.86 -52.49 -0.41 1.66 16 19 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16 20 N -0.91 -27.22 10.67 55.49 0.59 -26.63 16 21 Si 0.90 22.89 29.58 -169.99 -5.03 17.86 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.50 7.29 -51.93 -0.38 0.12 16 28 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 1.12 8.14 -51.92 -0.42 0.69 16 33 H 0.10 0.79 8.05 -51.94 -0.42 0.37 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.07 0.59 6.00 -51.93 -0.31 0.28 16 37 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 38 H 0.08 2.03 7.42 -51.93 -0.39 1.65 16 39 H 0.05 1.09 8.03 -51.93 -0.42 0.67 16 40 H 0.03 0.68 7.86 -51.93 -0.41 0.28 16 41 H 0.03 0.78 7.40 -51.93 -0.38 0.39 16 42 H 0.04 1.20 7.21 -51.93 -0.37 0.83 16 43 H 0.00 -0.07 7.83 -51.93 -0.41 -0.47 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -33.13 354.61 -7.91 -41.04 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.94 Total: -3.17 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 0.09 Total: 3.80 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.46 Total: -53.37 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.13 -7.91 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496812017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.052 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds