Wall clock time and date at job start Mon Mar 30 2020 00:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47058 * 2 1 4 4 C 1.52997 * 109.47193 * 119.99920 * 2 1 3 5 5 H 1.09002 * 115.55396 * 274.33458 * 4 2 1 6 6 C 1.53002 * 117.49784 * 128.62290 * 4 2 1 7 7 C 1.52998 * 60.00049 * 252.50878 * 6 4 2 8 8 H 1.09005 * 117.50038 * 107.48830 * 7 6 4 9 9 C 1.50700 * 117.52059 * 252.51749 * 7 6 4 10 10 O 1.21281 * 120.00022 * 68.72095 * 9 7 6 11 11 N 1.34780 * 120.00044 * 248.71543 * 9 7 6 12 12 C 1.46495 * 120.00077 * 0.02562 * 11 9 7 13 13 C 1.46500 * 119.99796 * 180.02562 * 11 9 7 14 14 C 1.52998 * 109.47368 * 90.00117 * 13 11 9 15 15 N 1.46493 * 109.47147 * 179.97438 * 14 13 11 16 16 C 1.46509 * 119.99953 * 269.99880 * 15 14 13 17 17 C 1.36937 * 120.00190 * 89.99965 * 15 14 13 18 18 H 1.07996 * 119.99804 * 20.35998 * 17 15 14 19 19 C 1.38818 * 120.00196 * 200.36292 * 17 15 14 20 20 N 1.31622 * 119.99629 * 14.98349 * 19 17 15 21 21 Si 1.86796 * 119.99802 * 194.98696 * 19 17 15 22 22 H 1.48506 * 109.47207 * 85.00356 * 21 19 17 23 23 H 1.48501 * 109.46867 * 205.00040 * 21 19 17 24 24 H 1.48497 * 109.47298 * 325.00000 * 21 19 17 25 25 H 1.08998 * 109.47528 * 299.99968 * 1 2 3 26 26 H 1.08993 * 109.47408 * 59.99906 * 1 2 3 27 27 H 1.09004 * 109.47356 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47528 * 240.00032 * 2 1 3 29 29 H 1.09001 * 109.47367 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47292 * 300.00380 * 3 2 1 31 31 H 1.09001 * 109.47283 * 60.00042 * 3 2 1 32 32 H 1.09011 * 117.49503 * 145.02475 * 6 4 2 33 33 H 1.08989 * 117.50178 * 0.02562 * 6 4 2 34 34 H 1.09003 * 109.47572 * 89.99654 * 12 11 9 35 35 H 1.08996 * 109.47585 * 209.99975 * 12 11 9 36 36 H 1.09005 * 109.47282 * 330.00051 * 12 11 9 37 37 H 1.09005 * 109.46850 * 210.00020 * 13 11 9 38 38 H 1.09002 * 109.47423 * 329.99629 * 13 11 9 39 39 H 1.09005 * 109.47056 * 299.99777 * 14 13 11 40 40 H 1.09002 * 109.47138 * 59.99948 * 14 13 11 41 41 H 1.09000 * 109.46919 * 95.10105 * 16 15 14 42 42 H 1.09000 * 109.47001 * 215.09762 * 16 15 14 43 43 H 1.08994 * 109.46670 * 335.09589 * 16 15 14 44 44 H 0.96999 * 119.99196 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 2.1266 -0.1060 2.1449 6 6 3.0741 -1.8313 1.0513 7 6 1.6358 -2.1852 1.4343 8 1 1.0064 -2.6345 0.6660 9 6 1.3879 -2.6662 2.8408 10 8 1.5095 -1.9009 3.7737 11 7 1.0310 -3.9470 3.0620 12 6 0.8846 -4.8716 1.9351 13 6 0.7895 -4.4144 4.4292 14 6 -0.6845 -4.2106 4.7851 15 7 -0.9260 -4.6785 6.1521 16 6 -1.3141 -6.0708 6.3919 17 6 -0.7891 -3.8147 7.2058 18 1 -0.8310 -2.7485 7.0389 19 6 -0.5962 -4.3094 8.4884 20 7 -0.2520 -5.5677 8.6635 21 14 -0.8254 -3.1894 9.9657 22 1 -2.2605 -3.1597 10.3464 23 1 -0.0217 -3.7015 11.1045 24 1 -0.3763 -1.8167 9.6205 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8416 -1.9465 1.8169 33 1 3.3914 -2.0475 0.0313 34 1 1.8385 -5.3621 1.7412 35 1 0.1324 -5.6226 2.1767 36 1 0.5739 -4.3181 1.0489 37 1 1.0374 -5.4735 4.5002 38 1 1.4122 -3.8484 5.1221 39 1 -0.9323 -3.1514 4.7141 40 1 -1.3071 -4.7767 4.0923 41 1 -0.4274 -6.6598 6.6264 42 1 -2.0112 -6.1146 7.2288 43 1 -1.7924 -6.4735 5.4992 44 1 -0.1176 -5.9134 9.5598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496812017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:15 Heat of formation + Delta-G solvation = -15.721595 kcal Electronic energy + Delta-G solvation = -21024.578217 eV Core-core repulsion = 17977.599981 eV Total energy + Delta-G solvation = -3046.978236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23396 -38.76021 -37.68816 -36.38339 -34.24639 -33.43545 -30.44986 -28.01430 -27.95585 -27.54209 -26.27832 -24.10417 -23.69782 -22.27148 -20.74963 -19.88382 -18.86394 -18.17512 -17.31352 -16.94264 -16.35118 -15.78195 -15.72767 -15.34478 -15.08694 -14.85648 -14.28422 -14.00489 -13.94471 -13.92687 -13.68915 -13.34511 -13.15903 -13.02496 -12.99681 -12.80143 -12.75913 -12.44758 -12.15451 -12.09509 -12.04766 -12.03090 -11.65530 -11.54543 -11.18098 -10.92989 -10.75408 -10.70806 -9.75871 -8.82719 -7.89337 -5.34909 1.41585 1.42597 1.51740 1.52845 2.01867 2.48412 2.87181 3.24082 3.47676 3.74639 3.76654 3.81509 4.03005 4.12873 4.17871 4.35677 4.42857 4.46212 4.47182 4.57662 4.68515 4.76014 4.81229 4.84974 4.86071 4.90125 4.95441 5.01019 5.06301 5.09132 5.14464 5.24199 5.30053 5.30242 5.45690 5.52940 5.56455 5.61900 5.69017 6.27125 6.48748 7.10538 7.24222 7.81295 8.21516 9.13919 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023640 B = 0.004124 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.140519 B = 6788.376715 C = 7410.441267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.122 4.122 5 H 0.080 0.920 6 C -0.130 4.130 7 C -0.185 4.185 8 H 0.156 0.844 9 C 0.524 3.476 10 O -0.596 6.596 11 N -0.609 5.609 12 C 0.073 3.927 13 C 0.111 3.889 14 C 0.150 3.850 15 N -0.617 5.617 16 C 0.176 3.824 17 C -0.268 4.268 18 H 0.056 0.944 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.279 1.279 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.022 0.978 40 H 0.068 0.932 41 H 0.008 0.992 42 H 0.018 0.982 43 H 0.039 0.961 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 4.729 -23.833 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 C -0.203 4.203 4 C -0.141 4.141 5 H 0.098 0.902 6 C -0.167 4.167 7 C -0.206 4.206 8 H 0.173 0.827 9 C 0.314 3.686 10 O -0.478 6.478 11 N -0.341 5.341 12 C -0.068 4.068 13 C -0.014 4.014 14 C 0.023 3.977 15 N -0.340 5.340 16 C 0.031 3.969 17 C -0.398 4.398 18 H 0.074 0.926 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.205 1.205 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.037 0.963 43 H 0.057 0.943 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.867 4.989 -23.200 24.043 hybrid contribution -0.003 0.351 1.763 1.797 sum 3.863 5.340 -21.437 22.428 Atomic orbital electron populations 1.21847 0.95056 1.02059 1.01578 1.20738 0.95586 0.96213 0.95055 1.21814 1.01366 0.95227 1.01848 1.22475 1.02234 0.89207 1.00216 0.90157 1.23165 0.89170 1.00339 1.04021 1.22318 1.03070 1.01498 0.93701 0.82712 1.20581 0.75523 0.81484 0.91053 1.90698 1.54164 1.55861 1.47032 1.48031 1.67430 1.10554 1.08135 1.22111 1.03005 0.93534 0.88137 1.21988 0.98895 0.98683 0.81875 1.21116 0.93775 0.97212 0.85608 1.44190 1.79077 1.08988 1.01766 1.20620 0.96696 0.83373 0.96162 1.19415 1.43534 0.89331 0.87516 0.92638 1.25667 1.00229 0.97980 1.00380 1.70219 1.51432 1.15197 1.21087 0.85310 0.77804 0.78314 0.79201 1.20510 1.21382 1.20481 0.94568 0.90995 0.92385 0.88556 0.92148 0.91044 0.94050 0.90186 0.84119 0.91131 0.90204 0.88312 0.90640 0.94773 0.95919 0.91333 0.97348 0.96312 0.94306 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.03 71.98 0.65 -1.72 16 2 C -0.06 -0.87 3.07 -10.80 -0.03 -0.91 16 3 C -0.15 -2.12 9.18 71.98 0.66 -1.46 16 4 C -0.12 -2.65 4.66 -10.79 -0.05 -2.70 16 5 H 0.08 2.35 7.64 -2.39 -0.02 2.34 16 6 C -0.13 -2.34 9.88 30.59 0.30 -2.04 16 7 C -0.19 -4.09 4.49 -11.54 -0.05 -4.14 16 8 H 0.16 2.33 5.91 -2.38 -0.01 2.32 16 9 C 0.52 17.93 7.46 87.66 0.65 18.58 16 10 O -0.60 -27.57 15.84 -3.03 -0.05 -27.62 16 11 N -0.61 -19.27 2.87 -846.75 -2.43 -21.70 16 12 C 0.07 1.39 10.27 127.77 1.31 2.70 16 13 C 0.11 4.59 5.73 86.38 0.49 5.08 16 14 C 0.15 6.66 6.03 86.38 0.52 7.18 16 15 N -0.62 -33.01 2.93 -726.93 -2.13 -35.14 16 16 C 0.18 8.84 9.02 127.77 1.15 9.99 16 17 C -0.27 -16.06 9.68 84.04 0.81 -15.25 16 18 H 0.06 3.42 7.86 -2.91 -0.02 3.40 16 19 C -0.05 -2.80 5.06 84.86 0.43 -2.37 16 20 N -0.93 -56.87 10.67 21.65 0.23 -56.64 16 21 Si 0.97 48.05 29.58 68.60 2.03 50.07 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 25 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.89 7.29 -2.39 -0.02 0.87 16 28 H 0.10 1.01 7.90 -2.39 -0.02 0.99 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.14 1.47 8.05 -2.39 -0.02 1.45 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.41 8.07 -2.39 -0.02 1.39 16 36 H 0.10 1.26 6.00 -2.38 -0.01 1.24 16 37 H 0.08 2.95 8.07 -2.38 -0.02 2.93 16 38 H 0.03 1.74 7.42 -2.39 -0.02 1.72 16 39 H 0.02 1.10 8.03 -2.38 -0.02 1.08 16 40 H 0.07 2.56 7.86 -2.39 -0.02 2.54 16 41 H 0.01 0.45 7.40 -2.39 -0.02 0.43 16 42 H 0.02 1.00 7.21 -2.39 -0.02 0.98 16 43 H 0.04 1.59 7.83 -2.39 -0.02 1.57 16 44 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -76.69 354.61 5.45 -71.24 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.94 Total: 6.83 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 6.85 Total: 12.95 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.33 Total: -113.48 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.07 kcal Total: -76.69 5.45 -71.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496812017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.519 kcal (2) G-P(sol) polarization free energy of solvation -76.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds