Wall clock time and date at job start Mon Mar 30 2020 00:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 C 1.52994 * 109.47471 * 120.00284 * 2 1 3 5 5 H 1.08998 * 115.56351 * 286.46781 * 4 2 1 6 6 C 1.53000 * 117.49724 * 72.15558 * 4 2 1 7 7 C 1.53007 * 60.03348 * 107.50580 * 6 4 2 8 8 H 1.08994 * 117.50115 * 107.47927 * 7 6 4 9 9 C 1.50696 * 117.49589 * 252.50463 * 7 6 4 10 10 O 1.21284 * 120.00480 * 100.93134 * 9 7 6 11 11 N 1.34781 * 120.00032 * 280.92895 * 9 7 6 12 12 C 1.46501 * 119.99730 * 0.02562 * 11 9 7 13 13 C 1.46492 * 120.00497 * 179.97438 * 11 9 7 14 14 C 1.52999 * 109.47105 * 90.00118 * 13 11 9 15 15 N 1.46504 * 109.47476 * 180.02562 * 14 13 11 16 16 C 1.46492 * 119.99934 * 90.00057 * 15 14 13 17 17 C 1.36939 * 119.99434 * 270.00313 * 15 14 13 18 18 H 1.08005 * 119.99657 * 169.80955 * 17 15 14 19 19 C 1.38803 * 120.00567 * 349.80136 * 17 15 14 20 20 N 1.31619 * 120.00139 * 140.45720 * 19 17 15 21 21 Si 1.86798 * 120.00131 * 320.46456 * 19 17 15 22 22 H 1.48498 * 109.47436 * 94.74641 * 21 19 17 23 23 H 1.48500 * 109.47045 * 214.74497 * 21 19 17 24 24 H 1.48498 * 109.47226 * 334.74435 * 21 19 17 25 25 H 1.09005 * 109.47033 * 299.99333 * 1 2 3 26 26 H 1.08999 * 109.47411 * 59.99910 * 1 2 3 27 27 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47033 * 240.00667 * 2 1 3 29 29 H 1.08996 * 109.47338 * 184.24183 * 3 2 1 30 30 H 1.09003 * 109.47431 * 304.24822 * 3 2 1 31 31 H 1.08997 * 109.46990 * 64.24398 * 3 2 1 32 32 H 1.09000 * 117.50171 * 0.02562 * 6 4 2 33 33 H 1.09004 * 117.49687 * 214.99965 * 6 4 2 34 34 H 1.09004 * 109.46990 * 89.99415 * 12 11 9 35 35 H 1.09000 * 109.47565 * 209.99934 * 12 11 9 36 36 H 1.08999 * 109.47322 * 330.00325 * 12 11 9 37 37 H 1.08997 * 109.47669 * 210.00507 * 13 11 9 38 38 H 1.09000 * 109.47283 * 330.00389 * 13 11 9 39 39 H 1.09007 * 109.47288 * 300.00143 * 14 13 11 40 40 H 1.09004 * 109.47175 * 60.00330 * 14 13 11 41 41 H 1.08994 * 109.47484 * 85.15625 * 16 15 14 42 42 H 1.09004 * 109.46626 * 205.15601 * 16 15 14 43 43 H 1.09004 * 109.47314 * 325.15337 * 16 15 14 44 44 H 0.97000 * 120.00707 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.9341 -0.1729 2.1851 6 6 1.8835 -2.2424 1.3000 7 6 3.2673 -1.6230 1.0936 8 1 3.9680 -1.6674 1.9272 9 6 3.8810 -1.7326 -0.2784 10 8 3.8490 -0.7850 -1.0347 11 7 4.4655 -2.8839 -0.6651 12 6 4.5038 -4.0287 0.2481 13 6 5.0617 -2.9907 -1.9990 14 6 6.5298 -2.5647 -1.9371 15 7 7.1259 -2.6709 -3.2711 16 6 7.0867 -1.5261 -4.1843 17 6 7.7198 -3.8405 -3.6644 18 1 8.0113 -3.9781 -4.6952 19 6 7.9471 -4.8492 -2.7384 20 7 7.7595 -6.1074 -3.0763 21 14 8.5191 -4.4211 -1.0125 22 1 7.3440 -4.3348 -0.1086 23 1 9.4443 -5.4740 -0.5222 24 1 9.2236 -3.1141 -1.0344 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1273 1.4434 -0.0760 30 1 1.6159 1.9779 -0.8495 31 1 1.7401 1.9339 0.9255 32 1 1.4175 -2.7293 0.4433 33 1 1.6741 -2.6947 2.2694 34 1 3.6153 -4.6424 0.0989 35 1 5.3945 -4.6241 0.0474 36 1 4.5299 -3.6716 1.2776 37 1 4.9971 -4.0225 -2.3443 38 1 4.5240 -2.3419 -2.6904 39 1 6.5945 -1.5327 -1.5918 40 1 7.0677 -3.2135 -1.2457 41 1 7.9296 -0.8670 -3.9771 42 1 7.1466 -1.8801 -5.2135 43 1 6.1544 -0.9794 -4.0418 44 1 7.9180 -6.8123 -2.4292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496812023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:20 Heat of formation + Delta-G solvation = 24.720657 kcal Electronic energy + Delta-G solvation = -21802.287749 eV Core-core repulsion = 18757.063221 eV Total energy + Delta-G solvation = -3045.224528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.19585 -37.51959 -36.10900 -34.86219 -33.33442 -31.62623 -29.28343 -27.08914 -26.56839 -26.08685 -24.67331 -23.05317 -22.35715 -20.86569 -20.14121 -18.45192 -16.83544 -16.79361 -15.86880 -15.78741 -15.29894 -14.59801 -14.34732 -13.90945 -13.74429 -13.19159 -13.13173 -12.92922 -12.73508 -12.63464 -12.52421 -12.29084 -12.10267 -11.86304 -11.67899 -11.58310 -11.22853 -11.14836 -10.96120 -10.70088 -10.60626 -10.43571 -10.16822 -10.02999 -9.92065 -9.34889 -9.15010 -8.53965 -8.23505 -7.15050 -6.06432 -3.13279 2.82542 3.22511 3.27273 3.47882 3.52578 3.68677 4.47449 4.51315 4.67395 4.75322 4.97192 5.01464 5.14574 5.28838 5.38617 5.40077 5.46528 5.54856 5.60479 5.66642 5.68694 5.78665 5.88066 5.89954 5.91932 6.00633 6.04793 6.14245 6.21040 6.30303 6.34670 6.46174 6.51345 6.54319 6.58779 6.70989 6.76598 7.01324 7.76091 7.86322 8.22375 8.49643 8.91688 9.73007 10.07750 11.07279 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.005392 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.001396 B = 5191.518393 C = 5746.027426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.133 4.133 4 C -0.111 4.111 5 H 0.107 0.893 6 C -0.159 4.159 7 C -0.183 4.183 8 H 0.124 0.876 9 C 0.537 3.463 10 O -0.533 6.533 11 N -0.605 5.605 12 C 0.076 3.924 13 C 0.097 3.903 14 C 0.131 3.869 15 N -0.610 5.610 16 C 0.128 3.872 17 C -0.272 4.272 18 H 0.090 0.910 19 C 0.031 3.969 20 N -0.875 5.875 21 Si 0.849 3.151 22 H -0.281 1.281 23 H -0.305 1.305 24 H -0.281 1.281 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.006 0.994 42 H 0.047 0.953 43 H 0.033 0.967 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 8.089 10.362 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.130 4.130 5 H 0.125 0.875 6 C -0.196 4.196 7 C -0.204 4.204 8 H 0.142 0.858 9 C 0.324 3.676 10 O -0.411 6.411 11 N -0.337 5.337 12 C -0.067 4.067 13 C -0.027 4.027 14 C 0.004 3.996 15 N -0.333 5.333 16 C -0.018 4.018 17 C -0.399 4.399 18 H 0.108 0.892 19 C -0.169 4.169 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.211 1.211 23 H -0.233 1.233 24 H -0.207 1.207 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.109 8.404 9.907 18.456 hybrid contribution 0.669 -0.062 1.296 1.459 sum -12.440 8.341 11.203 18.704 Atomic orbital electron populations 1.21818 0.95734 1.01312 1.01242 1.20887 0.94364 0.96875 0.97215 1.21657 1.02110 0.95025 1.00288 1.22405 0.98357 0.92066 1.00149 0.87539 1.23028 0.96947 0.96248 1.03384 1.22270 0.92474 1.08471 0.97209 0.85791 1.19629 0.78087 0.82420 0.87442 1.90638 1.58567 1.37149 1.54708 1.47956 1.56326 1.12585 1.16849 1.21880 1.02753 0.88943 0.93139 1.22307 0.95594 1.03265 0.81494 1.21335 0.91798 0.98514 0.87938 1.44120 1.64545 1.12101 1.12581 1.21013 0.97621 0.89188 0.93974 1.18891 1.36052 0.89641 0.95278 0.89209 1.24773 1.01002 0.94465 0.96667 1.70184 1.45857 0.99524 1.36056 0.87497 0.79049 0.77630 0.87736 1.21055 1.23334 1.20716 0.93133 0.92875 0.93027 0.88911 0.91843 0.93209 0.93816 0.88466 0.88125 0.92714 0.90277 0.91583 0.89620 0.90569 0.94021 0.93109 0.97612 0.93456 0.94803 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.14 37.16 0.34 -1.11 16 2 C -0.08 -0.92 2.20 -90.62 -0.20 -1.12 16 3 C -0.13 -1.62 9.02 37.16 0.34 -1.28 16 4 C -0.11 -1.23 5.00 -90.58 -0.45 -1.68 16 5 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 6 C -0.16 -1.60 9.73 -26.73 -0.26 -1.86 16 7 C -0.18 -2.28 4.44 -91.73 -0.41 -2.69 16 8 H 0.12 1.38 7.88 -51.93 -0.41 0.97 16 9 C 0.54 8.94 6.85 -10.99 -0.08 8.86 16 10 O -0.53 -10.26 12.91 5.55 0.07 -10.19 16 11 N -0.60 -10.57 2.87 -181.58 -0.52 -11.10 16 12 C 0.08 1.12 10.21 59.85 0.61 1.73 16 13 C 0.10 2.01 5.73 -4.05 -0.02 1.99 16 14 C 0.13 3.02 5.16 -4.04 -0.02 3.00 16 15 N -0.61 -15.15 2.85 -181.12 -0.52 -15.66 16 16 C 0.13 2.69 10.70 59.84 0.64 3.33 16 17 C -0.27 -7.62 9.96 -15.06 -0.15 -7.77 16 18 H 0.09 2.64 8.00 -52.48 -0.42 2.22 16 19 C 0.03 0.88 5.18 -17.43 -0.09 0.79 16 20 N -0.88 -25.79 13.97 55.49 0.78 -25.01 16 21 Si 0.85 21.50 25.22 -169.99 -4.29 17.22 16 22 H -0.28 -6.54 5.04 56.52 0.28 -6.25 16 23 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 24 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.50 8.05 -51.93 -0.42 0.08 16 28 H 0.09 1.42 5.45 -51.93 -0.28 1.14 16 29 H 0.06 0.90 7.50 -51.93 -0.39 0.51 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.35 6.48 -51.93 -0.34 1.01 16 36 H 0.07 0.80 6.71 -51.93 -0.35 0.45 16 37 H 0.09 1.90 8.07 -51.93 -0.42 1.48 16 38 H 0.08 1.61 7.42 -51.93 -0.39 1.22 16 39 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 40 H 0.05 1.24 1.53 -51.93 -0.08 1.16 16 41 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 42 H 0.05 0.96 7.96 -51.93 -0.41 0.54 16 43 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -30.84 343.21 -6.86 -37.69 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.80 Total: -0.32 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 0.25 Total: 2.20 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.26 Total: -51.78 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.29 Total: 17.22 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.84 -6.86 -37.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496812023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.414 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds