Wall clock time and date at job start Mon Mar 30 2020 00:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47193 * 2 1 4 4 C 1.52994 * 109.47471 * 120.00284 * 2 1 3 5 5 H 1.08998 * 115.56351 * 286.46781 * 4 2 1 6 6 C 1.53000 * 117.49724 * 72.15558 * 4 2 1 7 7 C 1.53007 * 60.03348 * 107.50580 * 6 4 2 8 8 H 1.08994 * 117.50115 * 107.47927 * 7 6 4 9 9 C 1.50696 * 117.49589 * 252.50463 * 7 6 4 10 10 O 1.21284 * 120.00480 * 100.93134 * 9 7 6 11 11 N 1.34781 * 120.00032 * 280.92895 * 9 7 6 12 12 C 1.46501 * 119.99730 * 0.02562 * 11 9 7 13 13 C 1.46492 * 120.00497 * 179.97438 * 11 9 7 14 14 C 1.52999 * 109.47105 * 90.00118 * 13 11 9 15 15 N 1.46504 * 109.47476 * 180.02562 * 14 13 11 16 16 C 1.46492 * 119.99934 * 90.00057 * 15 14 13 17 17 C 1.36939 * 119.99434 * 270.00313 * 15 14 13 18 18 H 1.08005 * 119.99657 * 169.80955 * 17 15 14 19 19 C 1.38803 * 120.00567 * 349.80136 * 17 15 14 20 20 N 1.31619 * 120.00139 * 140.45720 * 19 17 15 21 21 Si 1.86798 * 120.00131 * 320.46456 * 19 17 15 22 22 H 1.48498 * 109.47436 * 94.74641 * 21 19 17 23 23 H 1.48500 * 109.47045 * 214.74497 * 21 19 17 24 24 H 1.48498 * 109.47226 * 334.74435 * 21 19 17 25 25 H 1.09005 * 109.47033 * 299.99333 * 1 2 3 26 26 H 1.08999 * 109.47411 * 59.99910 * 1 2 3 27 27 H 1.08996 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47033 * 240.00667 * 2 1 3 29 29 H 1.08996 * 109.47338 * 184.24183 * 3 2 1 30 30 H 1.09003 * 109.47431 * 304.24822 * 3 2 1 31 31 H 1.08997 * 109.46990 * 64.24398 * 3 2 1 32 32 H 1.09000 * 117.50171 * 0.02562 * 6 4 2 33 33 H 1.09004 * 117.49687 * 214.99965 * 6 4 2 34 34 H 1.09004 * 109.46990 * 89.99415 * 12 11 9 35 35 H 1.09000 * 109.47565 * 209.99934 * 12 11 9 36 36 H 1.08999 * 109.47322 * 330.00325 * 12 11 9 37 37 H 1.08997 * 109.47669 * 210.00507 * 13 11 9 38 38 H 1.09000 * 109.47283 * 330.00389 * 13 11 9 39 39 H 1.09007 * 109.47288 * 300.00143 * 14 13 11 40 40 H 1.09004 * 109.47175 * 60.00330 * 14 13 11 41 41 H 1.08994 * 109.47484 * 85.15625 * 16 15 14 42 42 H 1.09004 * 109.46626 * 205.15601 * 16 15 14 43 43 H 1.09004 * 109.47314 * 325.15337 * 16 15 14 44 44 H 0.97000 * 120.00707 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.9341 -0.1729 2.1851 6 6 1.8835 -2.2424 1.3000 7 6 3.2673 -1.6230 1.0936 8 1 3.9680 -1.6674 1.9272 9 6 3.8810 -1.7326 -0.2784 10 8 3.8490 -0.7850 -1.0347 11 7 4.4655 -2.8839 -0.6651 12 6 4.5038 -4.0287 0.2481 13 6 5.0617 -2.9907 -1.9990 14 6 6.5298 -2.5647 -1.9371 15 7 7.1259 -2.6709 -3.2711 16 6 7.0867 -1.5261 -4.1843 17 6 7.7198 -3.8405 -3.6644 18 1 8.0113 -3.9781 -4.6952 19 6 7.9471 -4.8492 -2.7384 20 7 7.7595 -6.1074 -3.0763 21 14 8.5191 -4.4211 -1.0125 22 1 7.3440 -4.3348 -0.1086 23 1 9.4443 -5.4740 -0.5222 24 1 9.2236 -3.1141 -1.0344 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1273 1.4434 -0.0760 30 1 1.6159 1.9779 -0.8495 31 1 1.7401 1.9339 0.9255 32 1 1.4175 -2.7293 0.4433 33 1 1.6741 -2.6947 2.2694 34 1 3.6153 -4.6424 0.0989 35 1 5.3945 -4.6241 0.0474 36 1 4.5299 -3.6716 1.2776 37 1 4.9971 -4.0225 -2.3443 38 1 4.5240 -2.3419 -2.6904 39 1 6.5945 -1.5327 -1.5918 40 1 7.0677 -3.2135 -1.2457 41 1 7.9296 -0.8670 -3.9771 42 1 7.1466 -1.8801 -5.2135 43 1 6.1544 -0.9794 -4.0418 44 1 7.9180 -6.8123 -2.4292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496812023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:20 Heat of formation + Delta-G solvation = 6.542906 kcal Electronic energy + Delta-G solvation = -21803.075995 eV Core-core repulsion = 18757.063221 eV Total energy + Delta-G solvation = -3046.012774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38953 -38.77206 -37.71950 -36.34195 -34.28359 -33.74069 -30.92189 -28.24176 -27.94875 -27.60081 -26.17162 -23.91743 -23.78998 -22.71516 -21.10815 -19.67652 -18.86503 -18.10368 -17.40529 -17.03864 -16.86961 -16.02083 -15.66974 -15.28224 -15.07375 -14.80179 -14.49894 -14.42486 -14.10835 -13.93235 -13.82248 -13.60636 -13.34838 -13.23428 -13.12623 -12.93273 -12.73695 -12.58106 -12.33084 -12.08481 -12.05118 -12.00174 -11.57651 -11.20777 -11.06037 -10.88001 -10.57117 -10.48285 -9.80029 -9.12446 -8.24365 -5.29953 1.21416 1.40545 1.47700 1.59687 1.97508 2.38770 2.78078 2.91216 3.41323 3.52891 3.73179 3.91679 3.97234 4.11405 4.25985 4.27235 4.30544 4.46335 4.49119 4.51602 4.62808 4.65065 4.74394 4.76753 4.85069 4.85613 4.86868 4.90761 4.99020 4.99626 5.05906 5.06739 5.08015 5.23534 5.35500 5.45924 5.54039 5.64377 5.77255 6.04141 6.46479 6.83600 7.20930 7.62440 7.98705 8.92603 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.005392 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.001396 B = 5191.518393 C = 5746.027426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 C -0.130 4.130 4 C -0.111 4.111 5 H 0.131 0.869 6 C -0.136 4.136 7 C -0.197 4.197 8 H 0.146 0.854 9 C 0.531 3.469 10 O -0.566 6.566 11 N -0.612 5.612 12 C 0.074 3.926 13 C 0.115 3.885 14 C 0.133 3.867 15 N -0.624 5.624 16 C 0.127 3.873 17 C -0.278 4.278 18 H 0.063 0.937 19 C -0.009 4.009 20 N -0.915 5.915 21 Si 0.907 3.093 22 H -0.249 1.249 23 H -0.308 1.308 24 H -0.292 1.292 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.017 0.983 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 8.824 13.472 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.097 4.097 3 C -0.187 4.187 4 C -0.129 4.129 5 H 0.149 0.851 6 C -0.173 4.173 7 C -0.217 4.217 8 H 0.163 0.837 9 C 0.321 3.679 10 O -0.445 6.445 11 N -0.345 5.345 12 C -0.068 4.068 13 C -0.011 4.011 14 C 0.007 3.993 15 N -0.349 5.349 16 C -0.017 4.017 17 C -0.406 4.406 18 H 0.081 0.919 19 C -0.207 4.207 20 N -0.558 5.558 21 Si 0.739 3.261 22 H -0.177 1.177 23 H -0.237 1.237 24 H -0.219 1.219 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.756 9.156 13.051 21.723 hybrid contribution 1.144 -0.239 0.216 1.188 sum -13.612 8.917 13.268 20.996 Atomic orbital electron populations 1.21762 0.93981 1.01822 1.01977 1.20829 0.95822 0.96481 0.96522 1.21616 1.00267 0.95507 1.01343 1.22525 0.97093 0.92955 1.00313 0.85089 1.23142 0.94075 0.95487 1.04636 1.22269 0.93712 1.11052 0.94706 0.83696 1.20420 0.77294 0.81333 0.88877 1.90629 1.59547 1.38189 1.56164 1.48036 1.56451 1.14052 1.15916 1.22035 1.02516 0.88088 0.94168 1.21782 0.94279 1.01394 0.83596 1.21352 0.92823 0.98286 0.86834 1.44256 1.64756 1.12173 1.13725 1.21108 0.98745 0.88380 0.93513 1.18849 1.36369 0.91016 0.94388 0.91935 1.25220 1.01172 0.94236 1.00103 1.70238 1.47408 1.00447 1.37685 0.86516 0.79084 0.76257 0.84264 1.17657 1.23720 1.21870 0.91350 0.93209 0.92628 0.92587 0.94491 0.93473 0.91612 0.89422 0.84809 0.90670 0.92742 0.88308 0.91698 0.91631 0.93780 0.94121 0.96518 0.93181 0.93319 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.14 71.98 0.66 -1.80 16 2 C -0.08 -1.78 2.20 -10.80 -0.02 -1.80 16 3 C -0.13 -2.99 9.02 71.98 0.65 -2.34 16 4 C -0.11 -2.06 5.00 -10.77 -0.05 -2.11 16 5 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.14 -2.19 9.73 30.60 0.30 -1.89 16 7 C -0.20 -4.27 4.44 -11.51 -0.05 -4.32 16 8 H 0.15 2.57 7.88 -2.39 -0.02 2.55 16 9 C 0.53 16.99 6.85 87.66 0.60 17.59 16 10 O -0.57 -21.82 12.91 -3.04 -0.04 -21.86 16 11 N -0.61 -20.66 2.87 -846.77 -2.43 -23.09 16 12 C 0.07 1.99 10.21 127.77 1.31 3.30 16 13 C 0.11 4.77 5.73 86.38 0.50 5.27 16 14 C 0.13 6.12 5.16 86.38 0.45 6.56 16 15 N -0.62 -31.32 2.85 -726.93 -2.07 -33.39 16 16 C 0.13 5.37 10.70 127.77 1.37 6.74 16 17 C -0.28 -15.97 9.96 84.03 0.84 -15.13 16 18 H 0.06 3.84 8.00 -2.91 -0.02 3.81 16 19 C -0.01 -0.53 5.18 84.86 0.44 -0.09 16 20 N -0.91 -54.91 13.97 21.65 0.30 -54.61 16 21 Si 0.91 44.64 25.22 68.60 1.73 46.37 16 22 H -0.25 -10.88 5.04 99.48 0.50 -10.38 16 23 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 24 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 25 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.93 8.05 -2.39 -0.02 0.92 16 28 H 0.06 1.71 5.45 -2.38 -0.01 1.70 16 29 H 0.04 1.03 7.50 -2.39 -0.02 1.01 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.74 6.48 -2.39 -0.02 1.72 16 36 H 0.10 1.99 6.71 -2.39 -0.02 1.97 16 37 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 38 H 0.07 2.83 7.42 -2.39 -0.02 2.81 16 39 H 0.04 1.98 8.07 -2.38 -0.02 1.96 16 40 H 0.04 1.95 1.53 -2.38 0.00 1.95 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 2.05 7.96 -2.38 -0.02 2.03 16 43 H 0.05 1.89 8.11 -2.39 -0.02 1.87 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -68.36 343.21 5.20 -63.16 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.75 Total: 13.45 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.97 Total: 9.97 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -4.20 Total: -111.09 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.04 Total: -21.86 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.73 Total: 46.37 kcal Total: -68.36 5.20 -63.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496812023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.703 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds