Wall clock time and date at job start Mon Mar 30 2020 00:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47257 * 2 1 4 4 C 1.52995 * 109.47109 * 119.99819 * 2 1 3 5 5 H 1.08999 * 115.56770 * 325.69183 * 4 2 1 6 6 C 1.53005 * 117.49762 * 111.37617 * 4 2 1 7 7 C 1.53000 * 60.00066 * 107.48930 * 6 4 2 8 8 H 1.08998 * 117.50027 * 252.48684 * 7 6 4 9 9 C 1.50703 * 117.49619 * 107.48691 * 7 6 4 10 10 O 1.21279 * 120.00000 * 291.39148 * 9 7 6 11 11 N 1.34780 * 119.99746 * 111.39678 * 9 7 6 12 12 C 1.46497 * 119.99901 * 359.97438 * 11 9 7 13 13 C 1.46499 * 119.99924 * 180.02562 * 11 9 7 14 14 C 1.52997 * 109.47046 * 89.99879 * 13 11 9 15 15 C 1.53004 * 109.46997 * 179.97438 * 14 13 11 16 16 N 1.46494 * 109.47534 * 179.97438 * 15 14 13 17 17 C 1.36931 * 120.00458 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00542 * 21 19 17 24 24 H 1.48504 * 109.46636 * 60.00101 * 21 19 17 25 25 H 1.09001 * 109.46847 * 300.00380 * 1 2 3 26 26 H 1.09000 * 109.46862 * 59.99678 * 1 2 3 27 27 H 1.08995 * 109.47441 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46669 * 240.00123 * 2 1 3 29 29 H 1.08998 * 109.47333 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46946 * 299.99821 * 3 2 1 31 31 H 1.08994 * 109.47162 * 59.99867 * 3 2 1 32 32 H 1.09007 * 117.49687 * 0.02562 * 6 4 2 33 33 H 1.08994 * 117.49899 * 214.97891 * 6 4 2 34 34 H 1.09000 * 109.47658 * 270.00466 * 12 11 9 35 35 H 1.08998 * 109.47335 * 30.00613 * 12 11 9 36 36 H 1.09001 * 109.47202 * 149.99982 * 12 11 9 37 37 H 1.08998 * 109.46827 * 329.99314 * 13 11 9 38 38 H 1.09000 * 109.46858 * 210.00166 * 13 11 9 39 39 H 1.08998 * 109.47770 * 60.00012 * 14 13 11 40 40 H 1.09003 * 109.47201 * 299.99180 * 14 13 11 41 41 H 1.08998 * 109.46846 * 59.99452 * 15 14 13 42 42 H 1.09000 * 109.46887 * 300.00275 * 15 14 13 43 43 H 0.97000 * 119.99459 * 359.97438 * 16 15 14 44 44 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4311 -0.5983 2.1449 6 6 2.7419 -2.0663 1.0514 7 6 3.5550 -0.8281 1.4342 8 1 4.1887 -0.3848 0.6661 9 6 4.0911 -0.7553 2.8408 10 8 3.3287 -0.6171 3.7739 11 7 5.4177 -0.8437 3.0618 12 6 6.3384 -1.0111 1.9347 13 6 5.9388 -0.7735 4.4292 14 6 6.0051 -2.1822 5.0226 15 6 6.5499 -2.1089 6.4505 16 7 6.6129 -3.4576 7.0190 17 6 7.0726 -3.6417 8.2956 18 1 7.3893 -2.7927 8.8833 19 6 7.1318 -4.9196 8.8345 20 7 6.7464 -5.9544 8.1181 21 14 7.7597 -5.1710 10.5757 22 1 7.7238 -6.6171 10.9110 23 1 9.1557 -4.6748 10.6750 24 1 6.8990 -4.4207 11.5253 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.8406 -2.4371 0.0311 33 1 2.5947 -2.8281 1.8168 34 1 6.4847 -2.0735 1.7396 35 1 5.9194 -0.5334 1.0491 36 1 7.2964 -0.5508 2.1767 37 1 5.2803 -0.1535 5.0375 38 1 6.9377 -0.3376 4.4154 39 1 6.6636 -2.8022 4.4143 40 1 5.0061 -2.6180 5.0365 41 1 5.8918 -1.4888 7.0590 42 1 7.5489 -1.6732 6.4362 43 1 6.3289 -4.2201 6.4910 44 1 6.7881 -6.8474 8.4945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498636022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:49 Heat of formation + Delta-G solvation = -16.932505 kcal Electronic energy + Delta-G solvation = -20324.761847 eV Core-core repulsion = 17277.731102 eV Total energy + Delta-G solvation = -3047.030745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28370 -37.91230 -36.01819 -34.76943 -33.57677 -32.16047 -29.83301 -27.46737 -26.89998 -26.02114 -23.90603 -23.09283 -22.25855 -20.88718 -20.08409 -18.93082 -17.34476 -17.00557 -16.26969 -15.42137 -15.12827 -14.82337 -14.49867 -14.33335 -13.94470 -13.40722 -13.35466 -13.12252 -13.01050 -12.93674 -12.62301 -12.45336 -12.33317 -11.90137 -11.81029 -11.55819 -11.41603 -10.94261 -10.88946 -10.80209 -10.70554 -10.44795 -10.35096 -10.22121 -10.07578 -9.72974 -9.63583 -8.81833 -8.62108 -6.86919 -5.71346 -2.99962 2.50027 2.94565 3.47767 3.51389 3.53047 3.65782 4.23700 4.50328 4.52796 4.64283 4.73214 4.79081 4.96383 5.04099 5.08111 5.25242 5.27957 5.32489 5.38255 5.47946 5.50793 5.57498 5.59173 5.61366 5.61809 5.73893 5.75587 5.82560 5.91572 5.97079 5.99839 6.14049 6.18640 6.35165 6.43910 6.59135 6.91324 6.93980 7.38746 7.73901 8.22292 8.47726 9.58270 10.17259 10.52015 11.51789 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035150 B = 0.002933 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.403038 B = 9543.604508 C = 9827.714016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.115 4.115 5 H 0.118 0.882 6 C -0.147 4.147 7 C -0.189 4.189 8 H 0.122 0.878 9 C 0.540 3.460 10 O -0.535 6.535 11 N -0.613 5.613 12 C 0.079 3.921 13 C 0.119 3.881 14 C -0.138 4.138 15 C 0.157 3.843 16 N -0.733 5.733 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 13.444 -21.734 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.203 4.203 4 C -0.133 4.133 5 H 0.136 0.864 6 C -0.184 4.184 7 C -0.209 4.209 8 H 0.140 0.860 9 C 0.328 3.672 10 O -0.412 6.412 11 N -0.345 5.345 12 C -0.064 4.064 13 C -0.004 4.004 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.377 5.377 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.212 1.212 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.273 13.556 -21.061 26.081 hybrid contribution 0.532 -0.556 0.757 1.080 sum -6.741 13.000 -20.305 25.034 Atomic orbital electron populations 1.21803 0.94570 1.01998 1.01845 1.20736 0.96049 0.95933 0.95728 1.21821 1.00998 0.95708 1.01809 1.22484 0.92032 0.98536 1.00286 0.86448 1.23088 1.01463 0.90976 1.02914 1.22305 0.96052 1.06546 0.96041 0.86003 1.19660 0.81847 0.75947 0.89720 1.90712 1.56673 1.49082 1.44725 1.47810 1.06118 1.72623 1.07967 1.21819 0.93758 1.01926 0.88899 1.21514 0.99262 0.98295 0.81291 1.22046 1.02044 0.95999 0.97615 1.20541 0.96824 0.89210 0.90593 1.42347 1.78335 1.02386 1.14682 1.19210 1.34816 0.92589 0.90368 0.91204 1.24759 1.02359 0.95565 0.98508 1.69664 1.53871 0.98160 1.36718 0.86235 0.78617 0.76682 0.84480 1.21685 1.21282 1.21246 0.92412 0.92641 0.92428 0.91110 0.92757 0.92716 0.92381 0.87890 0.88106 0.92361 0.91218 0.90960 0.89846 0.90532 0.92015 0.91677 0.96242 0.96416 0.78333 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 2 C -0.07 -0.49 3.07 -90.62 -0.28 -0.77 16 3 C -0.15 -1.05 9.03 37.16 0.34 -0.71 16 4 C -0.11 -1.12 4.66 -90.62 -0.42 -1.54 16 5 H 0.12 1.41 7.64 -51.93 -0.40 1.01 16 6 C -0.15 -1.37 9.88 -26.73 -0.26 -1.64 16 7 C -0.19 -1.91 4.49 -91.77 -0.41 -2.32 16 8 H 0.12 0.95 5.90 -51.93 -0.31 0.64 16 9 C 0.54 7.64 7.46 -10.98 -0.08 7.56 16 10 O -0.54 -9.82 15.84 5.56 0.09 -9.73 16 11 N -0.61 -7.82 2.87 -181.58 -0.52 -8.34 16 12 C 0.08 0.69 10.31 59.85 0.62 1.31 16 13 C 0.12 1.72 5.45 -4.04 -0.02 1.70 16 14 C -0.14 -2.46 5.65 -26.73 -0.15 -2.61 16 15 C 0.16 3.36 6.26 -4.04 -0.03 3.34 16 16 N -0.73 -19.84 5.60 -59.91 -0.34 -20.18 16 17 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 20 N -0.94 -29.34 13.06 55.49 0.72 -28.61 16 21 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.46 7.90 -51.93 -0.41 0.05 16 29 H 0.05 0.38 7.29 -51.93 -0.38 0.00 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.73 8.05 -51.92 -0.42 0.31 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.45 5.99 -51.93 -0.31 0.14 16 36 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 37 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 38 H 0.08 0.93 7.89 -51.93 -0.41 0.52 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 10.88 7.67 -40.82 -0.31 10.56 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -34.37 358.53 -8.21 -42.58 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.94 Total: 4.91 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.61 Total: -4.10 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.13 Total: -57.13 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.37 -8.21 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498636022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.648 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds