Wall clock time and date at job start Mon Mar 30 2020 00:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47257 * 2 1 4 4 C 1.52995 * 109.47109 * 119.99819 * 2 1 3 5 5 H 1.08999 * 115.56770 * 325.69183 * 4 2 1 6 6 C 1.53005 * 117.49762 * 111.37617 * 4 2 1 7 7 C 1.53000 * 60.00066 * 107.48930 * 6 4 2 8 8 H 1.08998 * 117.50027 * 252.48684 * 7 6 4 9 9 C 1.50703 * 117.49619 * 107.48691 * 7 6 4 10 10 O 1.21279 * 120.00000 * 291.39148 * 9 7 6 11 11 N 1.34780 * 119.99746 * 111.39678 * 9 7 6 12 12 C 1.46497 * 119.99901 * 359.97438 * 11 9 7 13 13 C 1.46499 * 119.99924 * 180.02562 * 11 9 7 14 14 C 1.52997 * 109.47046 * 89.99879 * 13 11 9 15 15 C 1.53004 * 109.46997 * 179.97438 * 14 13 11 16 16 N 1.46494 * 109.47534 * 179.97438 * 15 14 13 17 17 C 1.36931 * 120.00458 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00098 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00429 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00484 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47339 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.47239 * 300.00542 * 21 19 17 24 24 H 1.48504 * 109.46636 * 60.00101 * 21 19 17 25 25 H 1.09001 * 109.46847 * 300.00380 * 1 2 3 26 26 H 1.09000 * 109.46862 * 59.99678 * 1 2 3 27 27 H 1.08995 * 109.47441 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46669 * 240.00123 * 2 1 3 29 29 H 1.08998 * 109.47333 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46946 * 299.99821 * 3 2 1 31 31 H 1.08994 * 109.47162 * 59.99867 * 3 2 1 32 32 H 1.09007 * 117.49687 * 0.02562 * 6 4 2 33 33 H 1.08994 * 117.49899 * 214.97891 * 6 4 2 34 34 H 1.09000 * 109.47658 * 270.00466 * 12 11 9 35 35 H 1.08998 * 109.47335 * 30.00613 * 12 11 9 36 36 H 1.09001 * 109.47202 * 149.99982 * 12 11 9 37 37 H 1.08998 * 109.46827 * 329.99314 * 13 11 9 38 38 H 1.09000 * 109.46858 * 210.00166 * 13 11 9 39 39 H 1.08998 * 109.47770 * 60.00012 * 14 13 11 40 40 H 1.09003 * 109.47201 * 299.99180 * 14 13 11 41 41 H 1.08998 * 109.46846 * 59.99452 * 15 14 13 42 42 H 1.09000 * 109.46887 * 300.00275 * 15 14 13 43 43 H 0.97000 * 119.99459 * 359.97438 * 16 15 14 44 44 H 0.97005 * 119.99717 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.4311 -0.5983 2.1449 6 6 2.7419 -2.0663 1.0514 7 6 3.5550 -0.8281 1.4342 8 1 4.1887 -0.3848 0.6661 9 6 4.0911 -0.7553 2.8408 10 8 3.3287 -0.6171 3.7739 11 7 5.4177 -0.8437 3.0618 12 6 6.3384 -1.0111 1.9347 13 6 5.9388 -0.7735 4.4292 14 6 6.0051 -2.1822 5.0226 15 6 6.5499 -2.1089 6.4505 16 7 6.6129 -3.4576 7.0190 17 6 7.0726 -3.6417 8.2956 18 1 7.3893 -2.7927 8.8833 19 6 7.1318 -4.9196 8.8345 20 7 6.7464 -5.9544 8.1181 21 14 7.7597 -5.1710 10.5757 22 1 7.7238 -6.6171 10.9110 23 1 9.1557 -4.6748 10.6750 24 1 6.8990 -4.4207 11.5253 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 2.8406 -2.4371 0.0311 33 1 2.5947 -2.8281 1.8168 34 1 6.4847 -2.0735 1.7396 35 1 5.9194 -0.5334 1.0491 36 1 7.2964 -0.5508 2.1767 37 1 5.2803 -0.1535 5.0375 38 1 6.9377 -0.3376 4.4154 39 1 6.6636 -2.8022 4.4143 40 1 5.0061 -2.6180 5.0365 41 1 5.8918 -1.4888 7.0590 42 1 7.5489 -1.6732 6.4362 43 1 6.3289 -4.2201 6.4910 44 1 6.7881 -6.8474 8.4945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498636022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:49 Heat of formation + Delta-G solvation = -38.463189 kcal Electronic energy + Delta-G solvation = -20325.695487 eV Core-core repulsion = 17277.731102 eV Total energy + Delta-G solvation = -3047.964385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29705 -38.76885 -37.43234 -36.40837 -34.37913 -33.91366 -31.63815 -28.06931 -27.94314 -27.31273 -25.50758 -23.91978 -23.61714 -22.48415 -20.78087 -19.92481 -19.18207 -18.30611 -17.36675 -16.62965 -16.46387 -16.01370 -15.86179 -15.41215 -15.29828 -15.05453 -14.64684 -14.11319 -13.98147 -13.73649 -13.54912 -13.38597 -13.35917 -13.02108 -12.99796 -12.76706 -12.72781 -12.45991 -12.17818 -12.11203 -12.04894 -11.85563 -11.81794 -11.55861 -11.20584 -10.96786 -10.96505 -10.78801 -9.70829 -9.06456 -7.98778 -5.29430 1.44527 1.45826 1.49387 1.55525 1.96574 2.53998 2.85286 3.34281 3.44593 3.74210 3.77271 3.85018 3.96295 4.08425 4.11091 4.22393 4.35221 4.41742 4.44787 4.52151 4.56110 4.67188 4.67676 4.73021 4.83094 4.84915 4.86460 4.92535 4.99865 5.05378 5.07365 5.22575 5.25062 5.26235 5.28837 5.44517 5.45039 5.52510 5.55646 6.22979 6.38225 7.15600 7.28277 8.02828 8.26931 9.25028 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035150 B = 0.002933 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.403038 B = 9543.604508 C = 9827.714016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.118 4.118 5 H 0.084 0.916 6 C -0.140 4.140 7 C -0.185 4.185 8 H 0.157 0.843 9 C 0.528 3.472 10 O -0.591 6.591 11 N -0.611 5.611 12 C 0.071 3.929 13 C 0.126 3.874 14 C -0.120 4.120 15 C 0.155 3.845 16 N -0.750 5.750 17 C -0.252 4.252 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.981 3.019 22 H -0.293 1.293 23 H -0.273 1.273 24 H -0.278 1.278 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.136 0.864 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.012 0.988 42 H 0.036 0.964 43 H 0.372 0.628 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.649 14.486 -23.633 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.078 4.078 3 C -0.203 4.203 4 C -0.137 4.137 5 H 0.102 0.898 6 C -0.177 4.177 7 C -0.205 4.205 8 H 0.174 0.826 9 C 0.318 3.682 10 O -0.472 6.472 11 N -0.342 5.342 12 C -0.070 4.070 13 C 0.002 3.998 14 C -0.159 4.159 15 C 0.028 3.972 16 N -0.392 5.392 17 C -0.384 4.384 18 H 0.096 0.904 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.809 3.191 22 H -0.219 1.219 23 H -0.199 1.199 24 H -0.204 1.204 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.154 0.846 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.030 0.970 42 H 0.053 0.947 43 H 0.203 0.797 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.938 14.642 -22.996 27.901 hybrid contribution 0.109 -0.848 1.335 1.585 sum -5.829 13.794 -21.661 26.334 Atomic orbital electron populations 1.21816 0.94518 1.02012 1.01971 1.20745 0.96087 0.95967 0.94967 1.21829 1.01334 0.95428 1.01730 1.22466 0.91536 0.99386 1.00299 0.89788 1.23156 1.00588 0.90115 1.03844 1.22346 0.96539 1.07443 0.94176 0.82600 1.20463 0.81970 0.74860 0.90916 1.90684 1.58115 1.51637 1.46753 1.47934 1.06459 1.71579 1.08273 1.22138 0.93872 1.02696 0.88323 1.21341 1.00604 0.95561 0.82274 1.21845 0.99905 0.98302 0.95844 1.20699 0.97616 0.86602 0.92251 1.42603 1.78264 1.04041 1.14323 1.19656 1.34266 0.93023 0.91418 0.90449 1.25691 1.03128 0.95303 1.02945 1.69835 1.55390 0.98416 1.38639 0.85109 0.78503 0.76331 0.79201 1.21881 1.19859 1.20442 0.93709 0.91091 0.92514 0.88996 0.92211 0.91167 0.94100 0.84575 0.90577 0.92149 0.88381 0.89150 0.91778 0.87309 0.91402 0.94807 0.96969 0.94654 0.79686 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.18 71.98 0.66 -1.20 16 2 C -0.06 -0.76 3.07 -10.79 -0.03 -0.80 16 3 C -0.15 -1.80 9.03 71.98 0.65 -1.15 16 4 C -0.12 -2.25 4.66 -10.79 -0.05 -2.30 16 5 H 0.08 2.18 7.64 -2.39 -0.02 2.16 16 6 C -0.14 -2.44 9.88 30.60 0.30 -2.14 16 7 C -0.18 -3.46 4.49 -11.54 -0.05 -3.51 16 8 H 0.16 1.81 5.90 -2.39 -0.01 1.80 16 9 C 0.53 14.96 7.46 87.66 0.65 15.62 16 10 O -0.59 -22.92 15.84 -3.03 -0.05 -22.96 16 11 N -0.61 -14.87 2.87 -846.77 -2.43 -17.30 16 12 C 0.07 1.01 10.31 127.77 1.32 2.33 16 13 C 0.13 3.55 5.45 86.38 0.47 4.02 16 14 C -0.12 -4.32 5.65 30.59 0.17 -4.14 16 15 C 0.16 6.70 6.26 86.38 0.54 7.25 16 16 N -0.75 -41.24 5.60 -343.46 -1.92 -43.16 16 17 C -0.25 -14.88 9.99 84.03 0.84 -14.04 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 19 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 20 N -0.97 -61.96 13.06 21.65 0.28 -61.68 16 21 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.85 7.90 -2.39 -0.02 0.83 16 29 H 0.06 0.67 7.29 -2.39 -0.02 0.65 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.14 1.48 8.05 -2.38 -0.02 1.46 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.84 5.99 -2.39 -0.01 0.83 16 36 H 0.09 0.99 7.89 -2.39 -0.02 0.98 16 37 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 38 H 0.11 2.38 7.89 -2.39 -0.02 2.36 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.37 21.74 7.67 -92.71 -0.71 21.03 16 44 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -76.90 358.53 4.09 -72.81 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.24 Total: 27.05 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.94 Total: -4.33 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -4.07 Total: -122.14 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.96 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -76.90 4.09 -72.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498636022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.346 kcal (2) G-P(sol) polarization free energy of solvation -76.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds