Wall clock time and date at job start Mon Mar 30 2020 00:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.52997 * 109.47401 * 120.00376 * 2 1 3 5 5 H 1.08998 * 115.55817 * 277.00606 * 4 2 1 6 6 C 1.52999 * 117.50026 * 131.31897 * 4 2 1 7 7 C 1.52996 * 117.49828 * 62.69493 * 4 2 1 8 8 H 1.09006 * 117.49950 * 214.98107 * 7 4 2 9 9 C 1.50699 * 117.50130 * 0.02562 * 7 4 2 10 10 O 1.21290 * 119.99804 * 37.95361 * 9 7 4 11 11 N 1.34776 * 120.00505 * 217.95823 * 9 7 4 12 12 C 1.46502 * 119.99520 * 359.97438 * 11 9 7 13 13 C 1.46498 * 120.00051 * 179.97438 * 11 9 7 14 14 C 1.52997 * 109.47266 * 89.99956 * 13 11 9 15 15 C 1.53002 * 109.47402 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47242 * 180.02562 * 15 14 13 17 17 C 1.36933 * 119.99701 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99867 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99883 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99889 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47466 * 89.99560 * 21 19 17 23 23 H 1.48500 * 109.47082 * 209.99724 * 21 19 17 24 24 H 1.48499 * 109.47040 * 329.99471 * 21 19 17 25 25 H 1.09001 * 109.46731 * 54.89499 * 1 2 3 26 26 H 1.08993 * 109.46743 * 174.89723 * 1 2 3 27 27 H 1.09000 * 109.46829 * 294.89525 * 1 2 3 28 28 H 1.09003 * 109.46792 * 240.00596 * 2 1 3 29 29 H 1.09004 * 109.47442 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47481 * 299.99984 * 3 2 1 31 31 H 1.09004 * 109.47346 * 60.00562 * 3 2 1 32 32 H 1.08997 * 117.49862 * 145.02243 * 6 4 2 33 33 H 1.09007 * 117.50003 * 359.97438 * 6 4 2 34 34 H 1.09006 * 109.46590 * 90.00572 * 12 11 9 35 35 H 1.09003 * 109.47149 * 209.99973 * 12 11 9 36 36 H 1.08997 * 109.47623 * 330.00589 * 12 11 9 37 37 H 1.09002 * 109.46852 * 209.99305 * 13 11 9 38 38 H 1.08991 * 109.47165 * 329.99595 * 13 11 9 39 39 H 1.09004 * 109.47315 * 299.99815 * 14 13 11 40 40 H 1.09004 * 109.47130 * 59.99889 * 14 13 11 41 41 H 1.08996 * 109.46967 * 300.00015 * 15 14 13 42 42 H 1.08998 * 109.46419 * 59.99794 * 15 14 13 43 43 H 0.96999 * 119.99909 * 359.97438 * 16 15 14 44 44 H 0.97002 * 119.99565 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 2.0838 -0.1178 2.1558 6 6 3.1204 -1.7877 1.0576 7 6 1.6887 -2.2024 1.4026 8 1 1.5011 -2.5734 2.4103 9 6 0.8671 -2.8394 0.3116 10 8 1.0573 -2.5349 -0.8470 11 7 -0.0790 -3.7473 0.6231 12 6 -0.3084 -4.1153 2.0224 13 6 -0.8780 -4.3660 -0.4376 14 6 -0.1812 -5.6379 -0.9249 15 6 -1.0159 -6.2844 -2.0323 16 7 -0.3490 -7.5026 -2.4985 17 6 -0.9143 -8.2545 -3.4936 18 1 -1.8518 -7.9497 -3.9345 19 6 -0.2821 -9.4086 -3.9358 20 7 -0.8256 -10.1316 -4.8919 21 14 1.3393 -9.9362 -3.1728 22 1 1.0746 -10.8236 -2.0119 23 1 2.1461 -10.6685 -4.1817 24 1 2.0862 -8.7360 -2.7181 25 1 -0.3633 0.5910 -0.8408 26 1 -0.3632 -1.0235 -0.0914 27 1 -0.3633 0.4326 0.9322 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.8747 -1.8858 1.8382 33 1 3.4675 -1.9757 0.0415 34 1 -1.0600 -3.4539 2.4535 35 1 -0.6589 -5.1462 2.0742 36 1 0.6229 -4.0197 2.5807 37 1 -1.8646 -4.6184 -0.0489 38 1 -0.9823 -3.6679 -1.2680 39 1 0.8055 -5.3856 -1.3136 40 1 -0.0769 -6.3361 -0.0944 41 1 -2.0023 -6.5368 -1.6433 42 1 -1.1206 -5.5864 -2.8628 43 1 0.4933 -7.7762 -2.1028 44 1 -0.3840 -10.9382 -5.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498636026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:54 Heat of formation + Delta-G solvation = -6.337504 kcal Electronic energy + Delta-G solvation = -20844.366036 eV Core-core repulsion = 17797.794725 eV Total energy + Delta-G solvation = -3046.571311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59775 -37.75935 -35.96213 -34.95994 -33.59012 -32.20704 -30.32326 -27.33592 -27.07010 -26.17453 -23.82879 -23.10030 -21.94822 -21.02209 -20.36924 -18.72560 -17.51109 -17.39044 -16.13537 -15.83532 -15.09162 -14.78571 -14.40604 -14.28202 -14.14308 -13.67065 -13.49343 -13.20575 -12.82143 -12.73473 -12.62598 -12.37261 -12.22713 -12.11479 -11.98480 -11.40857 -11.32771 -11.17269 -10.96776 -10.90324 -10.77547 -10.49471 -10.38284 -10.18290 -10.10763 -9.64695 -9.55400 -8.85774 -8.68551 -7.19239 -5.73472 -3.08546 2.37264 2.89675 3.40259 3.43910 3.47598 3.69590 4.25611 4.41207 4.60687 4.62701 4.67861 4.87300 4.94041 5.06128 5.12007 5.16223 5.19782 5.33237 5.37466 5.46365 5.50309 5.51415 5.55793 5.62541 5.67394 5.71808 5.77591 5.84483 5.85865 5.95204 6.03016 6.05511 6.19949 6.28669 6.36113 6.50442 6.78447 6.81062 7.32024 8.03199 8.17242 8.45943 9.25077 9.97705 10.18028 11.45130 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.003500 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.145907 B = 7997.280651 C = 8035.377409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.143 4.143 4 C -0.109 4.109 5 H 0.110 0.890 6 C -0.145 4.145 7 C -0.198 4.198 8 H 0.120 0.880 9 C 0.545 3.455 10 O -0.530 6.530 11 N -0.615 5.615 12 C 0.077 3.923 13 C 0.120 3.880 14 C -0.143 4.143 15 C 0.161 3.839 16 N -0.757 5.757 17 C -0.243 4.243 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 21.410 18.823 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C -0.200 4.200 4 C -0.128 4.128 5 H 0.128 0.872 6 C -0.183 4.183 7 C -0.219 4.219 8 H 0.138 0.862 9 C 0.333 3.667 10 O -0.407 6.407 11 N -0.348 5.348 12 C -0.067 4.067 13 C -0.003 4.003 14 C -0.182 4.182 15 C 0.033 3.967 16 N -0.402 5.402 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.549 21.489 18.026 28.415 hybrid contribution 1.088 -0.746 0.710 1.498 sum 5.637 20.744 18.736 28.515 Atomic orbital electron populations 1.21842 0.95112 1.02268 1.00834 1.20800 0.95871 0.95382 0.97039 1.21808 1.00884 0.95810 1.01510 1.22408 1.01493 0.88542 1.00353 0.87238 1.23105 0.89753 1.01602 1.03814 1.22444 0.99895 0.99962 0.99604 0.86172 1.19511 0.79601 0.78465 0.89084 1.90703 1.67510 1.61989 1.20538 1.47808 1.37273 1.41944 1.07761 1.21846 1.01693 1.01415 0.81710 1.21459 0.93442 0.94941 0.90435 1.22106 1.00626 0.96121 0.99302 1.20517 0.94339 0.88230 0.93630 1.42707 1.25559 1.26741 1.45225 1.19087 1.05284 1.02680 1.10239 0.89179 1.24677 0.98493 0.97588 0.98535 1.69706 1.40073 1.17522 1.31068 0.86523 0.84934 0.78269 0.78712 1.21100 1.21670 1.20363 0.92829 0.92267 0.93488 0.88981 0.92735 0.92622 0.93040 0.88059 0.87621 0.92611 0.90694 0.91031 0.90400 0.89618 0.91660 0.92121 0.95534 0.95400 0.80724 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.72 37.16 0.32 -1.18 16 2 C -0.07 -0.73 2.28 -90.62 -0.21 -0.94 16 3 C -0.14 -1.15 9.19 37.16 0.34 -0.81 16 4 C -0.11 -0.95 5.11 -90.62 -0.46 -1.41 16 5 H 0.11 0.75 8.13 -51.93 -0.42 0.33 16 6 C -0.15 -1.30 9.71 -26.73 -0.26 -1.56 16 7 C -0.20 -1.88 5.50 -91.77 -0.51 -2.39 16 8 H 0.12 0.86 5.94 -51.93 -0.31 0.56 16 9 C 0.54 7.00 5.29 -10.99 -0.06 6.94 16 10 O -0.53 -8.62 12.74 5.55 0.07 -8.55 16 11 N -0.61 -7.20 2.87 -181.57 -0.52 -7.72 16 12 C 0.08 0.61 10.15 59.85 0.61 1.21 16 13 C 0.12 1.59 5.41 -4.04 -0.02 1.57 16 14 C -0.14 -2.33 5.65 -26.73 -0.15 -2.48 16 15 C 0.16 3.25 6.26 -4.04 -0.03 3.22 16 16 N -0.76 -19.05 5.41 -59.91 -0.32 -19.37 16 17 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 18 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.94 -30.18 13.97 55.49 0.78 -29.40 16 21 Si 0.89 22.86 27.74 -169.99 -4.71 18.15 16 22 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.73 5.12 -51.93 -0.27 0.47 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 1.17 6.41 -51.93 -0.33 0.84 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.11 1.14 7.91 -51.93 -0.41 0.73 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.07 0.46 5.96 -51.93 -0.31 0.15 16 37 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.36 8.87 5.53 -40.82 -0.23 8.64 16 44 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -34.33 347.17 -7.89 -42.23 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.74 Total: 4.61 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.67 Total: -5.17 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.07 Total: -56.49 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.71 Total: 18.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.33 -7.89 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498636026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.888 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds