Wall clock time and date at job start Mon Mar 30 2020 00:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.52997 * 109.47401 * 120.00376 * 2 1 3 5 5 H 1.08998 * 115.55817 * 277.00606 * 4 2 1 6 6 C 1.52999 * 117.50026 * 131.31897 * 4 2 1 7 7 C 1.52996 * 117.49828 * 62.69493 * 4 2 1 8 8 H 1.09006 * 117.49950 * 214.98107 * 7 4 2 9 9 C 1.50699 * 117.50130 * 0.02562 * 7 4 2 10 10 O 1.21290 * 119.99804 * 37.95361 * 9 7 4 11 11 N 1.34776 * 120.00505 * 217.95823 * 9 7 4 12 12 C 1.46502 * 119.99520 * 359.97438 * 11 9 7 13 13 C 1.46498 * 120.00051 * 179.97438 * 11 9 7 14 14 C 1.52997 * 109.47266 * 89.99956 * 13 11 9 15 15 C 1.53002 * 109.47402 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47242 * 180.02562 * 15 14 13 17 17 C 1.36933 * 119.99701 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00534 * 359.97438 * 17 16 15 19 19 C 1.38820 * 119.99867 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99883 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99889 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47466 * 89.99560 * 21 19 17 23 23 H 1.48500 * 109.47082 * 209.99724 * 21 19 17 24 24 H 1.48499 * 109.47040 * 329.99471 * 21 19 17 25 25 H 1.09001 * 109.46731 * 54.89499 * 1 2 3 26 26 H 1.08993 * 109.46743 * 174.89723 * 1 2 3 27 27 H 1.09000 * 109.46829 * 294.89525 * 1 2 3 28 28 H 1.09003 * 109.46792 * 240.00596 * 2 1 3 29 29 H 1.09004 * 109.47442 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47481 * 299.99984 * 3 2 1 31 31 H 1.09004 * 109.47346 * 60.00562 * 3 2 1 32 32 H 1.08997 * 117.49862 * 145.02243 * 6 4 2 33 33 H 1.09007 * 117.50003 * 359.97438 * 6 4 2 34 34 H 1.09006 * 109.46590 * 90.00572 * 12 11 9 35 35 H 1.09003 * 109.47149 * 209.99973 * 12 11 9 36 36 H 1.08997 * 109.47623 * 330.00589 * 12 11 9 37 37 H 1.09002 * 109.46852 * 209.99305 * 13 11 9 38 38 H 1.08991 * 109.47165 * 329.99595 * 13 11 9 39 39 H 1.09004 * 109.47315 * 299.99815 * 14 13 11 40 40 H 1.09004 * 109.47130 * 59.99889 * 14 13 11 41 41 H 1.08996 * 109.46967 * 300.00015 * 15 14 13 42 42 H 1.08998 * 109.46419 * 59.99794 * 15 14 13 43 43 H 0.96999 * 119.99909 * 359.97438 * 16 15 14 44 44 H 0.97002 * 119.99565 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 2.0838 -0.1178 2.1558 6 6 3.1204 -1.7877 1.0576 7 6 1.6887 -2.2024 1.4026 8 1 1.5011 -2.5734 2.4103 9 6 0.8671 -2.8394 0.3116 10 8 1.0573 -2.5349 -0.8470 11 7 -0.0790 -3.7473 0.6231 12 6 -0.3084 -4.1153 2.0224 13 6 -0.8780 -4.3660 -0.4376 14 6 -0.1812 -5.6379 -0.9249 15 6 -1.0159 -6.2844 -2.0323 16 7 -0.3490 -7.5026 -2.4985 17 6 -0.9143 -8.2545 -3.4936 18 1 -1.8518 -7.9497 -3.9345 19 6 -0.2821 -9.4086 -3.9358 20 7 -0.8256 -10.1316 -4.8919 21 14 1.3393 -9.9362 -3.1728 22 1 1.0746 -10.8236 -2.0119 23 1 2.1461 -10.6685 -4.1817 24 1 2.0862 -8.7360 -2.7181 25 1 -0.3633 0.5910 -0.8408 26 1 -0.3632 -1.0235 -0.0914 27 1 -0.3633 0.4326 0.9322 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8901 32 1 3.8747 -1.8858 1.8382 33 1 3.4675 -1.9757 0.0415 34 1 -1.0600 -3.4539 2.4535 35 1 -0.6589 -5.1462 2.0742 36 1 0.6229 -4.0197 2.5807 37 1 -1.8646 -4.6184 -0.0489 38 1 -0.9823 -3.6679 -1.2680 39 1 0.8055 -5.3856 -1.3136 40 1 -0.0769 -6.3361 -0.0944 41 1 -2.0023 -6.5368 -1.6433 42 1 -1.1206 -5.5864 -2.8628 43 1 0.4933 -7.7762 -2.1028 44 1 -0.3840 -10.9382 -5.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498636026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:53 Heat of formation + Delta-G solvation = -28.355135 kcal Electronic energy + Delta-G solvation = -20845.320793 eV Core-core repulsion = 17797.794725 eV Total energy + Delta-G solvation = -3047.526067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48031 -38.63714 -37.34831 -36.39600 -34.44141 -34.02096 -32.09738 -28.19389 -28.03638 -27.26816 -25.26166 -23.89016 -23.40924 -22.54913 -21.15158 -19.70960 -19.58078 -18.24044 -17.15168 -16.75768 -16.54795 -16.10968 -15.79865 -15.63494 -15.10405 -14.96009 -14.77592 -14.31695 -14.04856 -13.80494 -13.62686 -13.42311 -13.31643 -13.04349 -12.93843 -12.84253 -12.73661 -12.49839 -12.12951 -12.09230 -12.04152 -11.86689 -11.82404 -11.69165 -11.13680 -11.01896 -10.88626 -10.60356 -9.63175 -9.36018 -8.07387 -5.41811 1.33994 1.38066 1.45485 1.48535 2.02148 2.44555 2.96081 3.23469 3.48828 3.59637 3.72067 3.88159 3.95739 4.05472 4.18553 4.21302 4.29436 4.38842 4.42973 4.48628 4.56101 4.65930 4.69987 4.73622 4.79657 4.84846 4.89139 4.90436 4.96360 5.02311 5.07427 5.19634 5.22156 5.24278 5.31579 5.40898 5.57042 5.61404 5.70237 6.16878 6.44397 7.02266 7.25124 7.78097 7.97691 9.14219 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.003500 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.145907 B = 7997.280651 C = 8035.377409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.138 4.138 4 C -0.102 4.102 5 H 0.141 0.859 6 C -0.147 4.147 7 C -0.200 4.200 8 H 0.152 0.848 9 C 0.534 3.466 10 O -0.577 6.577 11 N -0.616 5.616 12 C 0.069 3.931 13 C 0.127 3.873 14 C -0.124 4.124 15 C 0.157 3.843 16 N -0.761 5.761 17 C -0.241 4.241 18 H 0.057 0.943 19 C -0.064 4.064 20 N -0.983 5.983 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.259 1.259 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.015 0.985 43 H 0.365 0.635 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 22.414 22.608 32.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 C -0.195 4.195 4 C -0.120 4.120 5 H 0.158 0.842 6 C -0.184 4.184 7 C -0.221 4.221 8 H 0.170 0.830 9 C 0.324 3.676 10 O -0.457 6.457 11 N -0.347 5.347 12 C -0.072 4.072 13 C 0.003 3.997 14 C -0.163 4.163 15 C 0.031 3.969 16 N -0.407 5.407 17 C -0.372 4.372 18 H 0.075 0.925 19 C -0.256 4.256 20 N -0.633 5.633 21 Si 0.786 3.214 22 H -0.196 1.196 23 H -0.219 1.219 24 H -0.184 1.184 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.198 0.802 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.752 22.526 21.872 31.920 hybrid contribution 0.603 -1.003 -0.532 1.286 sum 6.355 21.523 21.340 30.968 Atomic orbital electron populations 1.21795 0.95524 1.00835 1.01519 1.20748 0.95549 0.96518 0.96562 1.21764 1.01171 0.94429 1.02149 1.22509 1.00677 0.88263 1.00539 0.84178 1.23141 0.90243 1.01787 1.03232 1.22538 0.99438 1.00447 0.99660 0.83015 1.20199 0.79677 0.78330 0.89347 1.90691 1.68845 1.63470 1.22701 1.47910 1.36584 1.41313 1.08938 1.22135 1.03440 1.02217 0.79433 1.21254 0.94532 0.93026 0.90895 1.21908 0.98822 0.97483 0.98100 1.20680 0.95310 0.86429 0.94526 1.42743 1.25873 1.27686 1.44385 1.19076 1.04239 1.03120 1.10796 0.92521 1.25560 1.02860 0.97786 0.99357 1.69888 1.42179 1.18245 1.33001 0.85346 0.79747 0.78386 0.77918 1.19636 1.21859 1.18422 0.93566 0.94463 0.91520 0.92665 0.92231 0.93153 0.91231 0.85167 0.90471 0.90681 0.90105 0.89068 0.87837 0.91794 0.93939 0.90618 0.94415 0.96681 0.80201 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.72 71.98 0.63 -2.22 16 2 C -0.08 -1.47 2.28 -10.79 -0.02 -1.49 16 3 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 4 C -0.10 -1.51 5.11 -10.80 -0.06 -1.56 16 5 H 0.14 1.27 8.13 -2.39 -0.02 1.26 16 6 C -0.15 -2.35 9.71 30.59 0.30 -2.05 16 7 C -0.20 -3.30 5.50 -11.54 -0.06 -3.36 16 8 H 0.15 1.49 5.94 -2.38 -0.01 1.47 16 9 C 0.53 13.30 5.29 87.66 0.46 13.77 16 10 O -0.58 -19.49 12.74 -3.06 -0.04 -19.53 16 11 N -0.62 -13.32 2.87 -846.76 -2.43 -15.76 16 12 C 0.07 0.84 10.15 127.77 1.30 2.14 16 13 C 0.13 3.25 5.41 86.38 0.47 3.72 16 14 C -0.12 -3.94 5.65 30.59 0.17 -3.77 16 15 C 0.16 6.35 6.26 86.38 0.54 6.89 16 16 N -0.76 -38.12 5.41 -343.46 -1.86 -39.98 16 17 C -0.24 -14.54 10.47 84.04 0.88 -13.66 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 19 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 20 N -0.98 -64.80 13.97 21.65 0.30 -64.50 16 21 Si 0.96 47.13 27.74 68.60 1.90 49.04 16 22 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 0.92 5.12 -2.39 -0.01 0.91 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.50 6.41 -2.39 -0.02 1.48 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.70 7.91 -2.38 -0.02 1.68 16 34 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.08 0.92 8.07 -2.39 -0.02 0.90 16 36 H 0.09 0.76 5.96 -2.39 -0.01 0.75 16 37 H 0.10 2.12 8.07 -2.39 -0.02 2.10 16 38 H 0.06 1.93 7.42 -2.39 -0.02 1.91 16 39 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.37 17.45 5.53 -92.71 -0.51 16.94 16 44 H 0.26 16.19 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -77.44 347.17 4.00 -73.44 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.39 Total: 23.70 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.73 Total: -6.42 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -3.99 Total: -120.23 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.04 Total: -19.53 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.04 kcal Total: -77.44 4.00 -73.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498636026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.089 kcal (2) G-P(sol) polarization free energy of solvation -77.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds