Wall clock time and date at job start Mon Mar 30 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.52993 * 109.47301 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47148 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00212 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99754 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.65152 * 354.18035 * 7 5 4 9 9 C 1.54912 * 104.83298 * 155.82834 * 8 7 5 10 10 C 1.55161 * 101.58076 * 37.01081 * 9 8 7 11 11 C 1.47019 * 125.64603 * 173.86510 * 7 5 4 12 12 H 1.09001 * 109.88533 * 300.51913 * 11 7 5 13 13 C 1.53003 * 109.88434 * 61.68491 * 11 7 5 14 14 N 1.46493 * 109.47459 * 183.47098 * 13 11 7 15 15 C 1.46500 * 119.99994 * 85.29359 * 14 13 11 16 16 C 1.36936 * 120.00054 * 265.29678 * 14 13 11 17 17 H 1.07998 * 120.00008 * 143.83523 * 16 14 13 18 18 C 1.38814 * 120.00072 * 323.83058 * 16 14 13 19 19 N 1.31617 * 120.00310 * 157.89481 * 18 16 14 20 20 Si 1.86801 * 119.99657 * 337.89360 * 18 16 14 21 21 H 1.48500 * 109.47268 * 95.37207 * 20 18 16 22 22 H 1.48500 * 109.46848 * 215.37381 * 20 18 16 23 23 H 1.48500 * 109.47428 * 335.37020 * 20 18 16 24 24 H 1.08998 * 109.47146 * 300.00373 * 1 2 3 25 25 H 1.09001 * 109.46882 * 60.00321 * 1 2 3 26 26 H 1.09001 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47146 * 239.99627 * 2 1 3 28 28 H 1.09001 * 109.46882 * 119.99679 * 2 1 3 29 29 H 1.09000 * 109.47035 * 59.99340 * 3 2 1 30 30 H 1.09001 * 109.46933 * 299.99647 * 3 2 1 31 31 H 1.09001 * 109.47101 * 299.99865 * 4 3 2 32 32 H 1.09000 * 109.47353 * 59.99855 * 4 3 2 33 33 H 1.09001 * 110.36631 * 274.66990 * 8 7 5 34 34 H 1.09003 * 110.36422 * 36.99247 * 8 7 5 35 35 H 1.09003 * 111.00105 * 155.08299 * 9 8 7 36 36 H 1.08995 * 111.00452 * 278.93360 * 9 8 7 37 37 H 1.08998 * 110.71858 * 82.85675 * 10 9 8 38 38 H 1.08992 * 110.71977 * 206.13318 * 10 9 8 39 39 H 1.09006 * 109.46792 * 303.47145 * 13 11 7 40 40 H 1.09002 * 109.47102 * 63.46834 * 13 11 7 41 41 H 1.08997 * 109.47565 * 85.12914 * 15 14 13 42 42 H 1.09005 * 109.46920 * 205.12734 * 15 14 13 43 43 H 1.08998 * 109.47037 * 325.12400 * 15 14 13 44 44 H 0.96998 * 120.00225 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 6.4599 2.0949 0.1241 9 6 7.7043 2.7420 -0.5335 10 6 7.5514 4.2236 -0.0987 11 6 6.0229 4.4339 -0.1272 12 1 5.7276 4.8936 -1.0704 13 6 5.6010 5.3241 1.0435 14 7 6.1617 6.6655 0.8638 15 6 5.4512 7.6531 0.0477 16 6 7.3499 6.9962 1.4586 17 1 8.0463 7.6460 0.9494 18 6 7.6594 6.4965 2.7162 19 7 8.9141 6.4322 3.1084 20 14 6.2949 5.9153 3.8519 21 1 6.1237 4.4471 3.7091 22 1 6.6496 6.2380 5.2573 23 1 5.0266 6.5988 3.4922 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 6.6559 1.8763 1.1738 34 1 6.1795 1.1856 -0.4077 35 1 8.6239 2.3114 -0.1371 36 1 7.6665 2.6473 -1.6186 37 1 7.9462 4.3733 0.9062 38 1 8.0430 4.8870 -0.8102 39 1 4.5133 5.3866 1.0788 40 1 5.9708 4.8976 1.9759 41 1 4.7066 8.1622 0.6596 42 1 6.1621 8.3823 -0.3410 43 1 4.9564 7.1497 -0.7829 44 1 9.1304 6.0827 3.9870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505420919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:05 Heat of formation + Delta-G solvation = -26.320705 kcal Electronic energy + Delta-G solvation = -21805.989773 eV Core-core repulsion = 18758.551926 eV Total energy + Delta-G solvation = -3047.437848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91619 -37.48085 -35.42262 -35.33105 -31.69224 -31.50584 -30.35644 -29.34080 -26.21892 -25.26882 -24.78054 -22.44075 -21.23000 -21.08215 -20.18109 -18.57992 -16.93442 -16.79227 -16.00686 -15.68149 -15.09703 -14.61993 -14.23286 -13.88217 -13.84792 -13.44792 -13.09862 -12.92688 -12.80136 -12.50973 -12.34725 -12.07291 -12.02658 -11.75711 -11.42350 -11.38824 -11.29758 -11.07618 -10.83233 -10.76194 -10.68020 -10.44856 -10.40453 -10.11250 -9.82105 -9.48355 -9.32481 -8.56666 -8.27216 -6.76800 -5.99351 -3.37256 2.92338 3.27804 3.33339 3.48353 3.58820 4.54071 4.58205 4.78680 4.82217 4.88424 5.04416 5.15581 5.17981 5.27426 5.32552 5.40388 5.43217 5.51983 5.65343 5.69867 5.73507 5.77872 5.79019 5.92120 5.99097 6.04936 6.13771 6.16914 6.28451 6.35784 6.41572 6.48812 6.56574 6.70482 6.75705 6.80819 7.01438 7.11195 7.89882 8.06288 8.37411 8.49304 9.00885 9.73234 10.16414 11.16052 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.005529 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.672982 B = 5062.951629 C = 5327.798207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.136 4.136 5 C 0.521 3.479 6 O -0.541 6.541 7 N -0.615 5.615 8 C 0.100 3.900 9 C -0.138 4.138 10 C -0.107 4.107 11 C 0.120 3.880 12 H 0.064 0.936 13 C 0.130 3.870 14 N -0.609 5.609 15 C 0.126 3.874 16 C -0.262 4.262 17 H 0.081 0.919 18 C 0.037 3.963 19 N -0.900 5.900 20 Si 0.873 3.127 21 H -0.289 1.289 22 H -0.302 1.302 23 H -0.270 1.270 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.007 0.993 42 H 0.045 0.955 43 H 0.027 0.973 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 -14.232 -7.677 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.176 4.176 5 C 0.310 3.690 6 O -0.418 6.418 7 N -0.350 5.350 8 C -0.024 4.024 9 C -0.176 4.176 10 C -0.145 4.145 11 C 0.015 3.985 12 H 0.083 0.917 13 C 0.003 3.997 14 N -0.334 5.334 15 C -0.019 4.019 16 C -0.390 4.390 17 H 0.098 0.902 18 C -0.163 4.163 19 N -0.542 5.542 20 Si 0.703 3.297 21 H -0.217 1.217 22 H -0.230 1.230 23 H -0.195 1.195 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.025 0.975 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.760 -13.736 -7.552 17.957 hybrid contribution -0.563 -0.438 0.800 1.072 sum -9.324 -14.174 -6.752 18.260 Atomic orbital electron populations 1.21761 0.95815 1.01337 1.02054 1.21546 0.96027 0.96777 1.01834 1.21376 0.92936 0.96333 1.03661 1.21678 0.97782 0.94265 1.03890 1.20339 0.80758 0.91526 0.76414 1.90683 1.54417 1.46581 1.50136 1.48794 1.04895 1.09311 1.71992 1.22321 0.87929 0.91429 1.00688 1.22839 0.96944 0.97694 1.00137 1.22562 0.93815 0.93652 1.04481 1.22452 0.93239 0.82210 1.00599 0.91741 1.21509 0.97211 0.85546 0.95395 1.44014 1.24356 1.06378 1.58618 1.21061 0.95171 0.92312 0.93394 1.18819 0.92394 1.30170 0.97654 0.90180 1.25380 0.95484 0.98760 0.96710 1.69860 1.16397 1.47487 1.20471 0.87025 0.84534 0.77761 0.80331 1.21683 1.23014 1.19531 0.92652 0.92687 0.92920 0.92111 0.92063 0.91202 0.91242 0.89327 0.89301 0.91485 0.91202 0.90179 0.91372 0.88661 0.90408 0.92973 0.92561 0.97524 0.93633 0.95436 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.11 -1.21 4.50 -26.74 -0.12 -1.33 16 4 C -0.14 -1.62 4.62 -27.89 -0.13 -1.75 16 5 C 0.52 8.86 7.67 -10.98 -0.08 8.78 16 6 O -0.54 -11.23 14.76 5.56 0.08 -11.15 16 7 N -0.62 -10.53 3.07 -163.02 -0.50 -11.03 16 8 C 0.10 1.34 6.75 -2.53 -0.02 1.33 16 9 C -0.14 -1.91 7.08 -24.58 -0.17 -2.08 16 10 C -0.11 -2.00 5.69 -24.90 -0.14 -2.14 16 11 C 0.12 2.37 3.17 -66.96 -0.21 2.16 16 12 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 13 C 0.13 3.07 3.80 -4.04 -0.02 3.05 16 14 N -0.61 -15.11 2.39 -181.12 -0.43 -15.54 16 15 C 0.13 2.72 10.72 59.85 0.64 3.36 16 16 C -0.26 -7.24 8.80 -15.06 -0.13 -7.37 16 17 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 18 C 0.04 1.05 4.93 -17.43 -0.09 0.96 16 19 N -0.90 -26.73 13.97 55.49 0.78 -25.96 16 20 Si 0.87 23.03 24.96 -169.99 -4.24 18.79 16 21 H -0.29 -7.44 6.67 56.52 0.38 -7.06 16 22 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 23 H -0.27 -7.32 7.11 56.52 0.40 -6.92 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.86 7.97 -51.93 -0.41 0.45 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.71 7.47 -51.93 -0.39 0.32 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 2.13 6.98 -51.93 -0.36 1.77 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.05 1.29 6.53 -51.93 -0.34 0.95 16 40 H 0.06 1.44 3.22 -51.93 -0.17 1.27 16 41 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 43 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -31.86 342.15 -7.43 -39.29 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -8.00 Total: -2.36 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.26 Total: 2.81 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.16 Total: -52.54 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.15 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.24 Total: 18.79 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.86 -7.43 -39.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505420919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.969 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds