Wall clock time and date at job start Mon Mar 30 2020 00:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.52993 * 109.47301 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47148 * 179.97438 * 4 3 2 6 6 O 1.21275 * 120.00212 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99754 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.65152 * 354.18035 * 7 5 4 9 9 C 1.54912 * 104.83298 * 155.82834 * 8 7 5 10 10 C 1.55161 * 101.58076 * 37.01081 * 9 8 7 11 11 C 1.47019 * 125.64603 * 173.86510 * 7 5 4 12 12 H 1.09001 * 109.88533 * 300.51913 * 11 7 5 13 13 C 1.53003 * 109.88434 * 61.68491 * 11 7 5 14 14 N 1.46493 * 109.47459 * 183.47098 * 13 11 7 15 15 C 1.46500 * 119.99994 * 85.29359 * 14 13 11 16 16 C 1.36936 * 120.00054 * 265.29678 * 14 13 11 17 17 H 1.07998 * 120.00008 * 143.83523 * 16 14 13 18 18 C 1.38814 * 120.00072 * 323.83058 * 16 14 13 19 19 N 1.31617 * 120.00310 * 157.89481 * 18 16 14 20 20 Si 1.86801 * 119.99657 * 337.89360 * 18 16 14 21 21 H 1.48500 * 109.47268 * 95.37207 * 20 18 16 22 22 H 1.48500 * 109.46848 * 215.37381 * 20 18 16 23 23 H 1.48500 * 109.47428 * 335.37020 * 20 18 16 24 24 H 1.08998 * 109.47146 * 300.00373 * 1 2 3 25 25 H 1.09001 * 109.46882 * 60.00321 * 1 2 3 26 26 H 1.09001 * 109.46886 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47146 * 239.99627 * 2 1 3 28 28 H 1.09001 * 109.46882 * 119.99679 * 2 1 3 29 29 H 1.09000 * 109.47035 * 59.99340 * 3 2 1 30 30 H 1.09001 * 109.46933 * 299.99647 * 3 2 1 31 31 H 1.09001 * 109.47101 * 299.99865 * 4 3 2 32 32 H 1.09000 * 109.47353 * 59.99855 * 4 3 2 33 33 H 1.09001 * 110.36631 * 274.66990 * 8 7 5 34 34 H 1.09003 * 110.36422 * 36.99247 * 8 7 5 35 35 H 1.09003 * 111.00105 * 155.08299 * 9 8 7 36 36 H 1.08995 * 111.00452 * 278.93360 * 9 8 7 37 37 H 1.08998 * 110.71858 * 82.85675 * 10 9 8 38 38 H 1.08992 * 110.71977 * 206.13318 * 10 9 8 39 39 H 1.09006 * 109.46792 * 303.47145 * 13 11 7 40 40 H 1.09002 * 109.47102 * 63.46834 * 13 11 7 41 41 H 1.08997 * 109.47565 * 85.12914 * 15 14 13 42 42 H 1.09005 * 109.46920 * 205.12734 * 15 14 13 43 43 H 1.08998 * 109.47037 * 325.12400 * 15 14 13 44 44 H 0.96998 * 120.00225 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 6.4599 2.0949 0.1241 9 6 7.7043 2.7420 -0.5335 10 6 7.5514 4.2236 -0.0987 11 6 6.0229 4.4339 -0.1272 12 1 5.7276 4.8936 -1.0704 13 6 5.6010 5.3241 1.0435 14 7 6.1617 6.6655 0.8638 15 6 5.4512 7.6531 0.0477 16 6 7.3499 6.9962 1.4586 17 1 8.0463 7.6460 0.9494 18 6 7.6594 6.4965 2.7162 19 7 8.9141 6.4322 3.1084 20 14 6.2949 5.9153 3.8519 21 1 6.1237 4.4471 3.7091 22 1 6.6496 6.2380 5.2573 23 1 5.0266 6.5988 3.4922 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 6.6559 1.8763 1.1738 34 1 6.1795 1.1856 -0.4077 35 1 8.6239 2.3114 -0.1371 36 1 7.6665 2.6473 -1.6186 37 1 7.9462 4.3733 0.9062 38 1 8.0430 4.8870 -0.8102 39 1 4.5133 5.3866 1.0788 40 1 5.9708 4.8976 1.9759 41 1 4.7066 8.1622 0.6596 42 1 6.1621 8.3823 -0.3410 43 1 4.9564 7.1497 -0.7829 44 1 9.1304 6.0827 3.9870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505420919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:05 Heat of formation + Delta-G solvation = -45.855741 kcal Electronic energy + Delta-G solvation = -21806.836876 eV Core-core repulsion = 18758.551926 eV Total energy + Delta-G solvation = -3048.284950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27579 -38.92229 -37.23718 -36.21630 -33.80224 -32.82524 -31.52383 -30.66480 -28.15667 -26.87018 -25.89079 -23.70164 -22.95911 -22.11201 -21.54148 -19.92363 -18.91573 -18.14985 -17.25766 -17.13871 -16.69099 -15.97826 -15.80475 -15.37165 -15.14387 -14.91086 -14.63130 -14.21660 -14.08256 -13.92937 -13.84451 -13.61196 -13.37634 -13.27709 -12.99534 -12.80415 -12.41079 -12.23539 -12.21021 -12.17790 -11.91556 -11.85514 -11.77377 -11.62261 -11.45128 -11.38625 -10.76077 -10.71269 -9.73703 -8.79802 -8.23392 -5.57699 1.17877 1.30590 1.42314 1.63900 2.01028 2.34840 3.03400 3.38001 3.52190 3.74258 3.92451 3.93344 4.01707 4.08189 4.25521 4.36635 4.41502 4.45268 4.46685 4.59681 4.64020 4.65419 4.72249 4.80033 4.86732 4.92942 4.98473 5.00456 5.01557 5.08457 5.09809 5.11531 5.19068 5.28477 5.38809 5.41844 5.50155 5.56031 5.90530 6.12965 6.62429 6.91050 7.19025 7.57589 8.03324 8.95841 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021069 B = 0.005529 C = 0.005254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.672982 B = 5062.951629 C = 5327.798207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.125 4.125 5 C 0.510 3.490 6 O -0.589 6.589 7 N -0.620 5.620 8 C 0.096 3.904 9 C -0.124 4.124 10 C -0.106 4.106 11 C 0.127 3.873 12 H 0.058 0.942 13 C 0.135 3.865 14 N -0.622 5.622 15 C 0.126 3.874 16 C -0.247 4.247 17 H 0.056 0.944 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.920 3.080 21 H -0.281 1.281 22 H -0.301 1.301 23 H -0.284 1.284 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.007 0.993 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -17.253 -8.772 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.142 4.142 4 C -0.164 4.164 5 C 0.302 3.698 6 O -0.469 6.469 7 N -0.354 5.354 8 C -0.025 4.025 9 C -0.162 4.162 10 C -0.144 4.144 11 C 0.021 3.979 12 H 0.076 0.924 13 C 0.009 3.991 14 N -0.347 5.347 15 C -0.019 4.019 16 C -0.377 4.377 17 H 0.074 0.926 18 C -0.195 4.195 19 N -0.577 5.577 20 Si 0.751 3.249 21 H -0.209 1.209 22 H -0.229 1.229 23 H -0.210 1.210 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.025 0.975 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.254 -16.795 -8.657 21.039 hybrid contribution -0.445 0.572 1.081 1.301 sum -9.699 -16.223 -7.576 20.363 Atomic orbital electron populations 1.21788 0.95794 1.02154 1.01516 1.21506 0.96051 0.94739 1.03155 1.21354 0.93040 0.97966 1.01815 1.21738 0.97547 0.90710 1.06411 1.21395 0.80176 0.93310 0.74961 1.90660 1.55591 1.48545 1.52147 1.48926 1.05867 1.08836 1.71760 1.22593 0.86484 0.92035 1.01405 1.22835 0.98128 0.93515 1.01674 1.22362 0.92534 0.97550 1.01961 1.22060 0.94160 0.83508 0.98184 0.92416 1.21398 0.95811 0.85660 0.96259 1.44154 1.23865 1.07813 1.58877 1.21135 0.95231 0.92053 0.93439 1.18678 0.92793 1.28871 0.97346 0.92627 1.25693 0.96503 0.99692 0.97650 1.69921 1.17521 1.49344 1.20941 0.86260 0.81936 0.77727 0.78940 1.20877 1.22941 1.20955 0.93516 0.93029 0.91388 0.90361 0.91033 0.93646 0.92719 0.87190 0.85891 0.91664 0.86402 0.88396 0.89048 0.92761 0.91391 0.94637 0.94571 0.97479 0.92709 0.93713 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.70 5.93 30.60 0.18 -1.52 16 3 C -0.10 -2.20 4.50 30.59 0.14 -2.07 16 4 C -0.12 -2.53 4.62 29.85 0.14 -2.39 16 5 C 0.51 16.51 7.67 87.66 0.67 17.18 16 6 O -0.59 -24.55 14.76 -3.02 -0.04 -24.59 16 7 N -0.62 -19.99 3.07 -788.06 -2.42 -22.40 16 8 C 0.10 2.23 6.75 86.86 0.59 2.82 16 9 C -0.12 -3.02 7.08 31.99 0.23 -2.80 16 10 C -0.11 -3.91 5.69 31.78 0.18 -3.73 16 11 C 0.13 4.97 3.17 45.34 0.14 5.12 16 12 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 13 C 0.13 6.44 3.80 86.38 0.33 6.77 16 14 N -0.62 -31.32 2.39 -726.94 -1.74 -33.06 16 15 C 0.13 5.45 10.72 127.77 1.37 6.82 16 16 C -0.25 -13.99 8.80 84.03 0.74 -13.25 16 17 H 0.06 3.40 8.06 -2.91 -0.02 3.37 16 18 C 0.00 0.12 4.93 84.86 0.42 0.54 16 19 N -0.93 -56.46 13.97 21.65 0.30 -56.15 16 20 Si 0.92 48.48 24.96 68.60 1.71 50.19 16 21 H -0.28 -14.28 6.67 99.48 0.66 -13.62 16 22 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 23 H -0.28 -15.42 7.11 99.48 0.71 -14.72 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 30 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.12 1.71 7.97 -2.39 -0.02 1.69 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.12 1.67 7.47 -2.39 -0.02 1.65 16 35 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 2.46 6.98 -2.39 -0.02 2.45 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.04 1.80 6.53 -2.38 -0.02 1.78 16 40 H 0.04 1.87 3.22 -2.39 -0.01 1.86 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.05 2.24 8.00 -2.38 -0.02 2.22 16 43 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 44 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -71.83 342.15 4.55 -67.28 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.90 Total: 6.78 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 5.84 Total: 11.95 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -3.85 Total: -111.62 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.04 Total: -24.59 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.71 Total: 50.19 kcal Total: -71.83 4.55 -67.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505420919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.429 kcal (2) G-P(sol) polarization free energy of solvation -71.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds