Wall clock time and date at job start Mon Mar 30 2020 00:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47292 * 2 1 4 4 C 1.53002 * 109.47506 * 120.00575 * 2 1 3 5 5 H 1.09000 * 109.46682 * 299.99994 * 4 2 1 6 6 C 1.52997 * 109.46942 * 59.99477 * 4 2 1 7 7 C 1.53002 * 109.46965 * 185.00140 * 6 4 2 8 8 N 1.46496 * 109.47425 * 180.02562 * 7 6 4 9 9 C 1.34777 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00135 * 0.27234 * 9 8 7 11 11 C 1.50706 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.53781 * 113.61383 * 279.13403 * 11 9 8 13 13 C 1.53957 * 87.01759 * 220.05254 * 12 11 9 14 14 C 1.53783 * 87.11454 * 25.36149 * 13 12 11 15 15 N 1.46495 * 109.47350 * 179.97438 * 4 2 1 16 16 C 1.36942 * 119.99897 * 84.99565 * 15 4 2 17 17 H 1.07991 * 120.00086 * 0.02562 * 16 15 4 18 18 C 1.38818 * 119.99572 * 179.97438 * 16 15 4 19 19 N 1.31617 * 120.00285 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99510 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46933 * 90.00164 * 20 18 16 22 22 H 1.48494 * 109.46624 * 210.00124 * 20 18 16 23 23 H 1.48501 * 109.47049 * 329.99954 * 20 18 16 24 24 H 1.09000 * 109.47145 * 299.99715 * 1 2 3 25 25 H 1.08997 * 109.47474 * 59.99515 * 1 2 3 26 26 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47145 * 240.00285 * 2 1 3 28 28 H 1.08998 * 109.47481 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47749 * 300.00620 * 3 2 1 30 30 H 1.09006 * 109.46697 * 60.00523 * 3 2 1 31 31 H 1.09000 * 109.47058 * 65.01040 * 6 4 2 32 32 H 1.08987 * 109.47609 * 305.00223 * 6 4 2 33 33 H 1.09004 * 109.46930 * 60.00393 * 7 6 4 34 34 H 1.09000 * 109.47312 * 300.00337 * 7 6 4 35 35 H 0.96999 * 119.99691 * 359.97438 * 8 7 6 36 36 H 1.09001 * 112.84823 * 50.33357 * 11 9 8 37 37 H 1.08998 * 113.61545 * 334.56772 * 12 11 9 38 38 H 1.08993 * 113.61303 * 105.47229 * 12 11 9 39 39 H 1.09004 * 113.53215 * 270.81277 * 13 12 11 40 40 H 1.08994 * 113.66957 * 139.93113 * 13 12 11 41 41 H 1.08997 * 113.61737 * 220.09125 * 14 13 12 42 42 H 1.08998 * 113.68520 * 89.19645 * 14 13 12 43 43 H 0.97001 * 120.00270 * 265.00137 * 15 4 2 44 44 H 0.97001 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9348 -2.8480 2.5564 8 7 1.4470 -4.2293 2.5561 9 6 1.6871 -5.0290 3.6141 10 8 2.3028 -4.6036 4.5684 11 6 1.1847 -6.4499 3.6139 12 6 -0.2986 -6.5788 3.9987 13 6 0.1015 -7.8301 4.8016 14 6 1.5083 -7.2177 4.9065 15 7 3.5050 -0.7219 1.2488 16 6 4.1902 0.3528 1.7497 17 1 3.6506 1.2005 2.1454 18 6 5.5784 0.3520 1.7499 19 7 6.2360 -0.6813 1.2681 20 14 6.5130 1.8177 2.4338 21 1 6.7603 1.6142 3.8839 22 1 7.8107 1.9520 1.7245 23 1 5.7111 3.0519 2.2368 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.9647 -2.7028 0.4073 32 1 0.4438 -2.1651 1.1596 33 1 1.5002 -2.3089 3.3982 34 1 3.0211 -2.8467 2.6459 35 1 0.9505 -4.5681 1.7948 36 1 1.4491 -6.9922 2.7061 37 1 -0.6615 -5.7595 4.6193 38 1 -0.9521 -6.7921 3.1529 39 1 0.0684 -8.7504 4.2184 40 1 -0.4096 -7.9167 5.7604 41 1 2.3112 -7.9459 4.7925 42 1 1.6416 -6.5732 5.7754 43 1 3.9897 -1.4834 0.8937 44 1 7.2060 -0.6819 1.2686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506978784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:32 Heat of formation + Delta-G solvation = -29.945368 kcal Electronic energy + Delta-G solvation = -20897.352611 eV Core-core repulsion = 17849.757587 eV Total energy + Delta-G solvation = -3047.595025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13197 -37.82621 -37.09724 -34.58177 -33.03115 -31.16831 -29.55126 -27.14833 -26.18267 -25.77942 -24.81277 -22.88623 -21.16167 -20.82898 -19.44369 -19.11516 -17.40715 -17.02223 -15.84189 -15.59493 -15.17869 -14.71510 -14.38780 -13.93836 -13.71143 -13.53976 -13.22448 -12.92025 -12.66728 -12.60435 -12.16516 -11.99429 -11.63885 -11.59941 -11.31442 -11.14474 -10.89495 -10.74280 -10.70774 -10.57742 -10.55316 -10.40515 -10.24901 -10.02172 -9.92143 -9.44373 -9.41348 -8.82159 -8.72434 -6.90334 -5.72302 -2.99750 2.83040 3.42717 3.47002 3.52362 3.53541 4.36587 4.45439 4.61295 4.63232 4.65055 5.13086 5.26507 5.38631 5.39976 5.47499 5.51762 5.58699 5.61368 5.66378 5.72939 5.73790 5.81882 5.93607 5.95599 6.04666 6.18470 6.25473 6.26912 6.29471 6.41264 6.46966 6.60022 6.70130 6.73275 6.79502 6.85273 7.14690 7.35209 7.74165 7.75828 8.45968 8.47273 9.57466 10.14369 10.49106 11.50283 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.004435 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.987302 B = 6312.258230 C = 7563.567939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.186 3.814 5 H 0.048 0.952 6 C -0.135 4.135 7 C 0.121 3.879 8 N -0.728 5.728 9 C 0.516 3.484 10 O -0.538 6.538 11 C -0.139 4.139 12 C -0.124 4.124 13 C -0.142 4.142 14 C -0.118 4.118 15 N -0.721 5.721 16 C -0.232 4.232 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.901 3.099 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.282 1.282 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.029 0.971 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.395 0.605 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.279 -11.084 0.269 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.066 0.934 6 C -0.174 4.174 7 C -0.002 4.002 8 N -0.379 5.379 9 C 0.301 3.699 10 O -0.415 6.415 11 C -0.161 4.161 12 C -0.161 4.161 13 C -0.180 4.180 14 C -0.156 4.156 15 N -0.362 5.362 16 C -0.363 4.363 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.732 3.268 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.228 0.772 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.738 -10.588 1.051 18.177 hybrid contribution 0.551 0.476 -0.315 0.793 sum -14.187 -10.112 0.737 17.438 Atomic orbital electron populations 1.21934 0.97167 1.00602 1.00723 1.21773 0.93254 0.97725 1.00497 1.21831 1.04276 0.94856 0.98802 1.20181 0.86019 0.91126 0.95189 0.93374 1.22122 1.00397 0.98230 0.96628 1.21440 1.01165 0.79593 0.97966 1.46144 1.57681 1.13880 1.20150 1.20459 0.79462 0.87417 0.82548 1.90714 1.40359 1.75845 1.34574 1.22801 0.98304 0.93771 1.01183 1.22843 0.93997 0.98861 1.00434 1.22865 0.97204 0.97278 1.00634 1.22792 0.96912 0.98697 0.97220 1.42441 0.98926 1.21080 1.73740 1.19197 0.88805 0.96257 1.32013 0.91046 1.24705 0.96473 0.97718 1.01988 1.69651 1.06779 1.29891 1.51717 0.86280 0.79577 0.82314 0.78606 1.21782 1.21920 1.20781 0.93302 0.93846 0.93228 0.92222 0.89490 0.95237 0.94140 0.91720 0.91609 0.92077 0.89860 0.77167 0.87144 0.89722 0.90800 0.90011 0.91103 0.91093 0.88697 0.78325 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.89 2.69 -90.62 -0.24 -2.14 16 3 C -0.14 -2.60 8.26 37.16 0.31 -2.29 16 4 C 0.19 3.48 2.02 -67.93 -0.14 3.34 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C -0.14 -2.06 4.65 -26.73 -0.12 -2.18 16 7 C 0.12 2.05 5.56 -4.04 -0.02 2.02 16 8 N -0.73 -9.97 5.56 -60.29 -0.33 -10.30 16 9 C 0.52 7.77 7.35 -10.98 -0.08 7.69 16 10 O -0.54 -10.75 15.91 5.56 0.09 -10.66 16 11 C -0.14 -1.47 4.14 -90.95 -0.38 -1.85 16 12 C -0.12 -1.05 7.64 -25.83 -0.20 -1.25 16 13 C -0.14 -1.12 8.09 -25.82 -0.21 -1.33 16 14 C -0.12 -1.24 7.40 -25.92 -0.19 -1.43 16 15 N -0.72 -17.15 4.45 -53.43 -0.24 -17.39 16 16 C -0.23 -6.18 7.57 -15.05 -0.11 -6.30 16 17 H 0.07 1.87 7.40 -52.49 -0.39 1.49 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 20 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.60 6.32 -51.93 -0.33 0.27 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.84 6.17 -51.94 -0.32 0.52 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.76 7.75 -51.93 -0.40 1.36 16 35 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 36 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.19 7.45 -51.93 -0.39 0.80 16 43 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -31.55 349.14 -8.53 -40.08 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.85 Total: 10.64 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.16 Total: -7.85 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.15 Total: -54.95 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.55 -8.53 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506978784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.137 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds