Wall clock time and date at job start Mon Mar 30 2020 00:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47292 * 2 1 4 4 C 1.53002 * 109.47506 * 120.00575 * 2 1 3 5 5 H 1.09000 * 109.46682 * 299.99994 * 4 2 1 6 6 C 1.52997 * 109.46942 * 59.99477 * 4 2 1 7 7 C 1.53002 * 109.46965 * 185.00140 * 6 4 2 8 8 N 1.46496 * 109.47425 * 180.02562 * 7 6 4 9 9 C 1.34777 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21274 * 120.00135 * 0.27234 * 9 8 7 11 11 C 1.50706 * 119.99766 * 179.97438 * 9 8 7 12 12 C 1.53781 * 113.61383 * 279.13403 * 11 9 8 13 13 C 1.53957 * 87.01759 * 220.05254 * 12 11 9 14 14 C 1.53783 * 87.11454 * 25.36149 * 13 12 11 15 15 N 1.46495 * 109.47350 * 179.97438 * 4 2 1 16 16 C 1.36942 * 119.99897 * 84.99565 * 15 4 2 17 17 H 1.07991 * 120.00086 * 0.02562 * 16 15 4 18 18 C 1.38818 * 119.99572 * 179.97438 * 16 15 4 19 19 N 1.31617 * 120.00285 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99510 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46933 * 90.00164 * 20 18 16 22 22 H 1.48494 * 109.46624 * 210.00124 * 20 18 16 23 23 H 1.48501 * 109.47049 * 329.99954 * 20 18 16 24 24 H 1.09000 * 109.47145 * 299.99715 * 1 2 3 25 25 H 1.08997 * 109.47474 * 59.99515 * 1 2 3 26 26 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47145 * 240.00285 * 2 1 3 28 28 H 1.08998 * 109.47481 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47749 * 300.00620 * 3 2 1 30 30 H 1.09006 * 109.46697 * 60.00523 * 3 2 1 31 31 H 1.09000 * 109.47058 * 65.01040 * 6 4 2 32 32 H 1.08987 * 109.47609 * 305.00223 * 6 4 2 33 33 H 1.09004 * 109.46930 * 60.00393 * 7 6 4 34 34 H 1.09000 * 109.47312 * 300.00337 * 7 6 4 35 35 H 0.96999 * 119.99691 * 359.97438 * 8 7 6 36 36 H 1.09001 * 112.84823 * 50.33357 * 11 9 8 37 37 H 1.08998 * 113.61545 * 334.56772 * 12 11 9 38 38 H 1.08993 * 113.61303 * 105.47229 * 12 11 9 39 39 H 1.09004 * 113.53215 * 270.81277 * 13 12 11 40 40 H 1.08994 * 113.66957 * 139.93113 * 13 12 11 41 41 H 1.08997 * 113.61737 * 220.09125 * 14 13 12 42 42 H 1.08998 * 113.68520 * 89.19645 * 14 13 12 43 43 H 0.97001 * 120.00270 * 265.00137 * 15 4 2 44 44 H 0.97001 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 1.9348 -2.8480 2.5564 8 7 1.4470 -4.2293 2.5561 9 6 1.6871 -5.0290 3.6141 10 8 2.3028 -4.6036 4.5684 11 6 1.1847 -6.4499 3.6139 12 6 -0.2986 -6.5788 3.9987 13 6 0.1015 -7.8301 4.8016 14 6 1.5083 -7.2177 4.9065 15 7 3.5050 -0.7219 1.2488 16 6 4.1902 0.3528 1.7497 17 1 3.6506 1.2005 2.1454 18 6 5.5784 0.3520 1.7499 19 7 6.2360 -0.6813 1.2681 20 14 6.5130 1.8177 2.4338 21 1 6.7603 1.6142 3.8839 22 1 7.8107 1.9520 1.7245 23 1 5.7111 3.0519 2.2368 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.9647 -2.7028 0.4073 32 1 0.4438 -2.1651 1.1596 33 1 1.5002 -2.3089 3.3982 34 1 3.0211 -2.8467 2.6459 35 1 0.9505 -4.5681 1.7948 36 1 1.4491 -6.9922 2.7061 37 1 -0.6615 -5.7595 4.6193 38 1 -0.9521 -6.7921 3.1529 39 1 0.0684 -8.7504 4.2184 40 1 -0.4096 -7.9167 5.7604 41 1 2.3112 -7.9459 4.7925 42 1 1.6416 -6.5732 5.7754 43 1 3.9897 -1.4834 0.8937 44 1 7.2060 -0.6819 1.2686 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506978784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:32 Heat of formation + Delta-G solvation = -51.039083 kcal Electronic energy + Delta-G solvation = -20898.267303 eV Core-core repulsion = 17849.757587 eV Total energy + Delta-G solvation = -3048.509717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21861 -39.14404 -38.27056 -35.96514 -34.90758 -32.70601 -31.28862 -28.30827 -27.45051 -26.55683 -26.30897 -24.63219 -22.52676 -21.97130 -20.69330 -20.22070 -19.13807 -18.35428 -17.03337 -16.95203 -16.53505 -16.06320 -15.66503 -15.50712 -15.28947 -14.99551 -14.64294 -14.34546 -13.77272 -13.51130 -13.38768 -13.25889 -12.95836 -12.88556 -12.86220 -12.64871 -12.46803 -12.21143 -12.11154 -12.00909 -11.91386 -11.69418 -11.41837 -11.38637 -11.26711 -11.19203 -10.83888 -10.61919 -10.06926 -8.90880 -7.89133 -5.13677 1.45085 1.46922 1.53779 1.64831 2.27338 2.58545 3.44256 3.55675 3.68542 3.83017 3.92062 3.93461 3.94761 4.14523 4.27362 4.30294 4.43080 4.54007 4.68451 4.72010 4.80379 4.81891 4.82612 4.88391 4.97759 5.04478 5.05460 5.11089 5.16137 5.21384 5.24231 5.27127 5.37474 5.45464 5.48498 5.56640 5.57543 5.71367 5.80709 6.33681 6.63054 7.33035 7.40090 8.17476 8.39009 9.34701 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.004435 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.987302 B = 6312.258230 C = 7563.567939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.178 3.822 5 H 0.037 0.963 6 C -0.118 4.118 7 C 0.132 3.868 8 N -0.712 5.712 9 C 0.507 3.493 10 O -0.598 6.598 11 C -0.136 4.136 12 C -0.116 4.116 13 C -0.127 4.127 14 C -0.133 4.133 15 N -0.731 5.731 16 C -0.213 4.213 17 H 0.074 0.926 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.957 3.043 21 H -0.296 1.296 22 H -0.298 1.298 23 H -0.268 1.268 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.417 0.583 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.371 0.629 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.529 -12.072 -0.966 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.069 3.931 5 H 0.055 0.945 6 C -0.156 4.156 7 C 0.008 3.992 8 N -0.364 5.364 9 C 0.295 3.705 10 O -0.479 6.479 11 C -0.157 4.157 12 C -0.153 4.153 13 C -0.164 4.164 14 C -0.171 4.171 15 N -0.370 5.370 16 C -0.345 4.345 17 H 0.092 0.908 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.787 3.213 21 H -0.223 1.223 22 H -0.225 1.225 23 H -0.193 1.193 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.254 0.746 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.203 0.797 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -18.077 -11.570 -0.218 21.463 hybrid contribution 1.479 0.792 0.085 1.680 sum -16.598 -10.777 -0.133 19.790 Atomic orbital electron populations 1.21851 0.93601 1.02456 1.01688 1.21631 0.96114 0.96146 0.98730 1.21769 1.01529 0.96400 0.99906 1.20454 0.83156 0.93739 0.95716 0.94494 1.21987 1.02623 0.95470 0.95559 1.21071 0.98023 0.81584 0.98536 1.45957 1.57180 1.12476 1.20766 1.21423 0.78254 0.89196 0.81599 1.90689 1.43045 1.77294 1.36824 1.22974 0.99917 0.90378 1.02382 1.22844 0.92602 0.98627 1.01261 1.22848 0.94543 0.97790 1.01250 1.22839 0.99270 0.98764 0.96197 1.42620 1.01199 1.19805 1.73386 1.19494 0.88988 0.96522 1.29473 0.90800 1.25378 0.97618 1.00146 1.03914 1.69797 1.06254 1.31848 1.54391 0.85368 0.78247 0.80318 0.77336 1.22346 1.22529 1.19291 0.92964 0.92323 0.90949 0.92745 0.93622 0.93028 0.94143 0.91022 0.87552 0.93635 0.94921 0.74608 0.84248 0.91187 0.87807 0.87569 0.90600 0.90581 0.91745 0.79742 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.85 71.98 0.64 -2.56 16 2 C -0.11 -3.37 2.69 -10.80 -0.03 -3.40 16 3 C -0.14 -4.96 8.26 71.98 0.59 -4.37 16 4 C 0.18 6.55 2.02 44.99 0.09 6.64 16 5 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 6 C -0.12 -3.38 4.65 30.59 0.14 -3.24 16 7 C 0.13 4.50 5.56 86.38 0.48 4.98 16 8 N -0.71 -18.74 5.56 -463.06 -2.57 -21.31 16 9 C 0.51 15.25 7.35 87.66 0.64 15.89 16 10 O -0.60 -25.08 15.91 -3.01 -0.05 -25.13 16 11 C -0.14 -2.61 4.14 -11.01 -0.05 -2.65 16 12 C -0.12 -1.62 7.64 31.18 0.24 -1.38 16 13 C -0.13 -1.63 8.09 31.18 0.25 -1.38 16 14 C -0.13 -2.68 7.40 31.12 0.23 -2.45 16 15 N -0.73 -35.56 4.45 -322.95 -1.44 -37.00 16 16 C -0.21 -11.62 7.57 84.03 0.64 -10.98 16 17 H 0.07 3.93 7.40 -2.92 -0.02 3.91 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 19 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 20 Si 0.96 47.56 29.55 68.60 2.03 49.59 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 22 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.36 6.32 -2.39 -0.02 1.34 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 2.00 6.01 -2.39 -0.01 1.99 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.11 2.24 6.17 -2.39 -0.01 2.22 16 33 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.03 1.45 7.75 -2.39 -0.02 1.43 16 35 H 0.42 7.30 8.47 -92.71 -0.79 6.52 16 36 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.70 7.45 -2.39 -0.02 1.68 16 43 H 0.37 19.75 7.80 -92.71 -0.72 19.02 16 44 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -73.63 349.14 2.06 -71.57 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.53 Total: 31.62 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.34 Total: -9.03 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -3.73 Total: -118.61 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -73.63 2.06 -71.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506978784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.532 kcal (2) G-P(sol) polarization free energy of solvation -73.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds