Wall clock time and date at job start Mon Mar 30 2020 00:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.52998 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08990 * 115.56470 * 29.29581 * 4 3 2 6 6 C 1.53006 * 117.49629 * 243.60176 * 4 3 2 7 7 C 1.52997 * 59.99924 * 252.51523 * 6 4 3 8 8 H 1.09002 * 117.49884 * 107.49654 * 7 6 4 9 9 C 1.50702 * 117.49669 * 252.51146 * 7 6 4 10 10 O 1.21280 * 120.00321 * 68.62265 * 9 7 6 11 11 N 1.34783 * 120.00171 * 248.62535 * 9 7 6 12 12 C 1.46506 * 119.99603 * 359.97438 * 11 9 7 13 13 C 1.46495 * 120.00138 * 179.97438 * 11 9 7 14 14 C 1.53002 * 109.47254 * 90.00077 * 13 11 9 15 15 H 1.09006 * 109.46990 * 295.00049 * 14 13 11 16 16 C 1.52993 * 109.47407 * 175.00001 * 14 13 11 17 17 N 1.46497 * 109.47115 * 54.99548 * 14 13 11 18 18 C 1.36939 * 120.00153 * 205.00113 * 17 14 13 19 19 H 1.07997 * 119.99740 * 0.02562 * 18 17 14 20 20 C 1.38814 * 120.00144 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47032 * 59.99940 * 22 20 18 24 24 H 1.48501 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47389 * 300.00076 * 22 20 18 26 26 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47183 * 300.00838 * 1 2 3 28 28 H 1.09007 * 109.46678 * 60.00727 * 1 2 3 29 29 H 1.08995 * 109.47183 * 239.99162 * 2 1 3 30 30 H 1.09007 * 109.46678 * 119.99273 * 2 1 3 31 31 H 1.09004 * 109.47179 * 59.99266 * 3 2 1 32 32 H 1.09007 * 109.46703 * 299.99258 * 3 2 1 33 33 H 1.08999 * 117.49661 * 0.02562 * 6 4 3 34 34 H 1.08999 * 117.49552 * 144.99844 * 6 4 3 35 35 H 1.08998 * 109.47105 * 90.00458 * 12 11 9 36 36 H 1.09004 * 109.46734 * 209.99888 * 12 11 9 37 37 H 1.09000 * 109.47107 * 329.99834 * 12 11 9 38 38 H 1.09004 * 109.47095 * 210.00127 * 13 11 9 39 39 H 1.08998 * 109.47410 * 330.00099 * 13 11 9 40 40 H 1.09001 * 109.47176 * 59.99439 * 16 14 13 41 41 H 1.08996 * 109.47586 * 179.97438 * 16 14 13 42 42 H 1.09006 * 109.47085 * 299.99989 * 16 14 13 43 43 H 0.96999 * 120.00166 * 25.00797 * 17 14 13 44 44 H 0.97000 * 119.99777 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0405 0.5849 -0.4801 6 6 4.2760 2.0460 1.2166 7 6 4.2765 2.7944 -0.1179 8 1 3.6513 3.6839 -0.1964 9 6 5.5697 2.8383 -0.8905 10 8 6.0124 1.8257 -1.3899 11 7 6.2343 4.0030 -1.0265 12 6 5.6992 5.2263 -0.4236 13 6 7.4916 4.0455 -1.7770 14 6 7.1969 4.3369 -3.2498 15 1 6.6331 3.5082 -3.6784 16 6 8.5139 4.5049 -4.0100 17 7 6.4110 5.5687 -3.3561 18 6 5.6050 5.7750 -4.4438 19 1 5.5484 5.0294 -5.2230 20 6 4.8608 6.9425 -4.5448 21 7 4.9295 7.8509 -3.5948 22 14 3.7619 7.2241 -6.0288 23 1 2.7462 6.1435 -6.1048 24 1 3.0791 8.5363 -5.8971 25 1 4.5863 7.2163 -7.2639 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.6503 2.4427 2.0161 34 1 5.2107 1.5851 1.5359 35 1 6.0884 5.3327 0.5889 36 1 5.9999 6.0872 -1.0208 37 1 4.6112 5.1693 -0.3906 38 1 8.1301 4.8307 -1.3720 39 1 7.9987 3.0845 -1.6913 40 1 9.0986 3.5884 -3.9309 41 1 8.3039 4.7121 -5.0593 42 1 9.0776 5.3336 -3.5815 43 1 6.4617 6.2383 -2.6561 44 1 4.4098 8.6669 -3.6656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507120502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:01 Heat of formation + Delta-G solvation = -13.947424 kcal Electronic energy + Delta-G solvation = -21155.063139 eV Core-core repulsion = 18108.161837 eV Total energy + Delta-G solvation = -3046.901302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86076 -37.44863 -36.02916 -34.15220 -33.84629 -31.99920 -28.88619 -27.69828 -26.80563 -25.82234 -23.82615 -22.80494 -21.94506 -20.58129 -19.95212 -18.53856 -17.26558 -16.86749 -15.81383 -15.25995 -15.10745 -14.79433 -14.30255 -14.08056 -13.66184 -13.34391 -13.20444 -12.73615 -12.53117 -12.25968 -12.21102 -12.05266 -12.01573 -11.66700 -11.38571 -11.33901 -11.24462 -11.06108 -10.87765 -10.82339 -10.69349 -10.35178 -10.16328 -10.05844 -9.87697 -9.62448 -9.34178 -8.90661 -8.08368 -6.93453 -5.77089 -3.03518 2.86313 3.42944 3.45058 3.48540 3.50158 3.95334 4.55207 4.60565 4.81798 4.85546 5.00514 5.10420 5.16562 5.30213 5.46397 5.51641 5.56438 5.63610 5.66430 5.70526 5.72433 5.76301 5.80687 5.91157 5.93289 5.96113 6.03085 6.15848 6.17440 6.20591 6.30259 6.36767 6.39251 6.42636 6.73241 6.86325 6.91367 7.20162 7.72095 7.86148 8.43105 8.62847 9.53907 10.10243 10.46243 11.46001 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.005298 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.194410 B = 5283.642674 C = 6417.389437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.119 4.119 5 H 0.115 0.885 6 C -0.151 4.151 7 C -0.184 4.184 8 H 0.125 0.875 9 C 0.545 3.455 10 O -0.554 6.554 11 N -0.591 5.591 12 C 0.083 3.917 13 C 0.110 3.890 14 C 0.154 3.846 15 H 0.051 0.949 16 C -0.162 4.162 17 N -0.720 5.720 18 C -0.230 4.230 19 H 0.067 0.933 20 C -0.014 4.014 21 N -0.937 5.937 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.381 0.619 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 -10.361 11.343 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.128 4.128 4 C -0.138 4.138 5 H 0.133 0.867 6 C -0.188 4.188 7 C -0.205 4.205 8 H 0.143 0.857 9 C 0.333 3.667 10 O -0.433 6.433 11 N -0.321 5.321 12 C -0.060 4.060 13 C -0.013 4.013 14 C 0.044 3.956 15 H 0.069 0.931 16 C -0.223 4.223 17 N -0.363 5.363 18 C -0.362 4.362 19 H 0.085 0.915 20 C -0.209 4.209 21 N -0.586 5.586 22 Si 0.736 3.264 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.216 0.784 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.387 -10.859 10.931 15.592 hybrid contribution -0.603 0.789 -0.745 1.241 sum -2.990 -10.070 10.186 14.632 Atomic orbital electron populations 1.21783 0.96006 1.01433 1.01835 1.21493 0.95526 0.96668 1.02173 1.21244 0.92130 0.97149 1.02300 1.22401 0.94521 0.95926 1.00937 0.86650 1.23043 1.02827 1.02539 0.90415 1.22354 0.98194 0.98608 1.01348 0.85709 1.19522 0.84460 0.82944 0.79795 1.90628 1.68648 1.34181 1.49867 1.47506 1.23742 1.08298 1.52544 1.21886 0.99615 0.87584 0.96918 1.21829 0.84744 1.01871 0.92849 1.20659 0.91955 0.91031 0.91992 0.93101 1.22369 0.98682 0.99461 1.01759 1.42468 1.51018 1.17917 1.24922 1.19202 1.17107 1.01522 0.98346 0.91475 1.24649 1.00846 0.97047 0.98349 1.69618 1.45531 1.09695 1.33773 0.86306 0.80602 0.76893 0.82645 1.21441 1.21745 1.21379 0.92905 0.92864 0.92645 0.91816 0.91993 0.91757 0.91218 0.88153 0.88651 0.93726 0.89193 0.91249 0.91043 0.90295 0.94321 0.92589 0.93482 0.78357 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.16 5.89 -26.73 -0.16 -1.32 16 3 C -0.09 -0.99 5.50 -26.73 -0.15 -1.13 16 4 C -0.12 -1.54 5.25 -90.62 -0.48 -2.01 16 5 H 0.12 1.67 7.60 -51.93 -0.39 1.28 16 6 C -0.15 -1.74 9.88 -26.73 -0.26 -2.01 16 7 C -0.18 -2.68 5.01 -91.77 -0.46 -3.14 16 8 H 0.13 1.76 6.44 -51.93 -0.33 1.43 16 9 C 0.54 9.91 7.46 -10.98 -0.08 9.83 16 10 O -0.55 -11.63 15.84 5.56 0.09 -11.54 16 11 N -0.59 -10.45 2.73 -181.56 -0.50 -10.94 16 12 C 0.08 1.33 9.89 59.85 0.59 1.93 16 13 C 0.11 1.96 5.05 -4.04 -0.02 1.94 16 14 C 0.15 3.22 3.20 -67.93 -0.22 3.00 16 15 H 0.05 1.19 8.08 -51.93 -0.42 0.77 16 16 C -0.16 -3.02 9.49 37.15 0.35 -2.67 16 17 N -0.72 -17.65 4.57 -53.43 -0.24 -17.89 16 18 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.94 -27.21 13.06 55.49 0.72 -26.48 16 22 Si 0.90 22.44 29.55 -169.99 -5.02 17.41 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.94 8.03 -51.93 -0.42 0.53 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 1.67 5.63 -51.93 -0.29 1.38 16 37 H 0.07 1.08 6.00 -51.93 -0.31 0.77 16 38 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 39 H 0.08 1.37 7.42 -51.93 -0.39 0.99 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.38 9.52 5.33 -40.82 -0.22 9.30 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -31.00 355.18 -8.15 -39.15 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.80 Total: 8.47 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.76 Total: -3.52 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.01 Total: -55.32 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.00 -8.15 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507120502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.200 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds