Wall clock time and date at job start Mon Mar 30 2020 00:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.52998 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08990 * 115.56470 * 29.29581 * 4 3 2 6 6 C 1.53006 * 117.49629 * 243.60176 * 4 3 2 7 7 C 1.52997 * 59.99924 * 252.51523 * 6 4 3 8 8 H 1.09002 * 117.49884 * 107.49654 * 7 6 4 9 9 C 1.50702 * 117.49669 * 252.51146 * 7 6 4 10 10 O 1.21280 * 120.00321 * 68.62265 * 9 7 6 11 11 N 1.34783 * 120.00171 * 248.62535 * 9 7 6 12 12 C 1.46506 * 119.99603 * 359.97438 * 11 9 7 13 13 C 1.46495 * 120.00138 * 179.97438 * 11 9 7 14 14 C 1.53002 * 109.47254 * 90.00077 * 13 11 9 15 15 H 1.09006 * 109.46990 * 295.00049 * 14 13 11 16 16 C 1.52993 * 109.47407 * 175.00001 * 14 13 11 17 17 N 1.46497 * 109.47115 * 54.99548 * 14 13 11 18 18 C 1.36939 * 120.00153 * 205.00113 * 17 14 13 19 19 H 1.07997 * 119.99740 * 0.02562 * 18 17 14 20 20 C 1.38814 * 120.00144 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47032 * 59.99940 * 22 20 18 24 24 H 1.48501 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47389 * 300.00076 * 22 20 18 26 26 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47183 * 300.00838 * 1 2 3 28 28 H 1.09007 * 109.46678 * 60.00727 * 1 2 3 29 29 H 1.08995 * 109.47183 * 239.99162 * 2 1 3 30 30 H 1.09007 * 109.46678 * 119.99273 * 2 1 3 31 31 H 1.09004 * 109.47179 * 59.99266 * 3 2 1 32 32 H 1.09007 * 109.46703 * 299.99258 * 3 2 1 33 33 H 1.08999 * 117.49661 * 0.02562 * 6 4 3 34 34 H 1.08999 * 117.49552 * 144.99844 * 6 4 3 35 35 H 1.08998 * 109.47105 * 90.00458 * 12 11 9 36 36 H 1.09004 * 109.46734 * 209.99888 * 12 11 9 37 37 H 1.09000 * 109.47107 * 329.99834 * 12 11 9 38 38 H 1.09004 * 109.47095 * 210.00127 * 13 11 9 39 39 H 1.08998 * 109.47410 * 330.00099 * 13 11 9 40 40 H 1.09001 * 109.47176 * 59.99439 * 16 14 13 41 41 H 1.08996 * 109.47586 * 179.97438 * 16 14 13 42 42 H 1.09006 * 109.47085 * 299.99989 * 16 14 13 43 43 H 0.96999 * 120.00166 * 25.00797 * 17 14 13 44 44 H 0.97000 * 119.99777 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0405 0.5849 -0.4801 6 6 4.2760 2.0460 1.2166 7 6 4.2765 2.7944 -0.1179 8 1 3.6513 3.6839 -0.1964 9 6 5.5697 2.8383 -0.8905 10 8 6.0124 1.8257 -1.3899 11 7 6.2343 4.0030 -1.0265 12 6 5.6992 5.2263 -0.4236 13 6 7.4916 4.0455 -1.7770 14 6 7.1969 4.3369 -3.2498 15 1 6.6331 3.5082 -3.6784 16 6 8.5139 4.5049 -4.0100 17 7 6.4110 5.5687 -3.3561 18 6 5.6050 5.7750 -4.4438 19 1 5.5484 5.0294 -5.2230 20 6 4.8608 6.9425 -4.5448 21 7 4.9295 7.8509 -3.5948 22 14 3.7619 7.2241 -6.0288 23 1 2.7462 6.1435 -6.1048 24 1 3.0791 8.5363 -5.8971 25 1 4.5863 7.2163 -7.2639 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.6503 2.4427 2.0161 34 1 5.2107 1.5851 1.5359 35 1 6.0884 5.3327 0.5889 36 1 5.9999 6.0872 -1.0208 37 1 4.6112 5.1693 -0.3906 38 1 8.1301 4.8307 -1.3720 39 1 7.9987 3.0845 -1.6913 40 1 9.0986 3.5884 -3.9309 41 1 8.3039 4.7121 -5.0593 42 1 9.0776 5.3336 -3.5815 43 1 6.4617 6.2383 -2.6561 44 1 4.4098 8.6669 -3.6656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507120502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:00 Heat of formation + Delta-G solvation = -31.213025 kcal Electronic energy + Delta-G solvation = -21155.811832 eV Core-core repulsion = 18108.161837 eV Total energy + Delta-G solvation = -3047.649994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20103 -38.67521 -37.54225 -35.78722 -34.74193 -33.90293 -30.76933 -28.72927 -28.10738 -27.15071 -25.76272 -24.12653 -22.77642 -21.78157 -21.35628 -19.88837 -19.28599 -18.20329 -17.22268 -16.72019 -16.41897 -16.10630 -15.70717 -15.52639 -15.22637 -14.86353 -14.16160 -13.99060 -13.87009 -13.70093 -13.65027 -13.27129 -13.11078 -13.07344 -12.92142 -12.79778 -12.66069 -12.51821 -12.22722 -12.18687 -11.94189 -11.88724 -11.66810 -11.62494 -11.15995 -10.99715 -10.90062 -10.69199 -9.55177 -8.95492 -7.93111 -5.18752 1.45750 1.46575 1.52763 1.52998 2.12055 2.55948 2.86997 3.39979 3.48979 3.76033 3.83568 3.87454 4.05594 4.16519 4.20928 4.29502 4.34673 4.36455 4.45882 4.61488 4.63420 4.67219 4.72889 4.83276 4.85036 4.88939 4.92730 4.96528 5.02146 5.08675 5.18458 5.20780 5.23754 5.36482 5.37971 5.41056 5.51113 5.51627 5.68630 6.29742 6.48112 7.22282 7.37428 8.09833 8.39118 9.29256 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014488 B = 0.005298 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.194410 B = 5283.642674 C = 6417.389437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.122 4.122 5 H 0.094 0.906 6 C -0.120 4.120 7 C -0.204 4.204 8 H 0.129 0.871 9 C 0.534 3.466 10 O -0.592 6.592 11 N -0.595 5.595 12 C 0.088 3.912 13 C 0.115 3.885 14 C 0.153 3.847 15 H 0.018 0.982 16 C -0.152 4.152 17 N -0.724 5.724 18 C -0.239 4.239 19 H 0.058 0.942 20 C -0.061 4.061 21 N -0.959 5.959 22 Si 0.961 3.039 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.056 0.944 43 H 0.379 0.621 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -10.561 12.840 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.123 4.123 4 C -0.141 4.141 5 H 0.112 0.888 6 C -0.157 4.157 7 C -0.225 4.225 8 H 0.147 0.853 9 C 0.324 3.676 10 O -0.474 6.474 11 N -0.324 5.324 12 C -0.055 4.055 13 C -0.008 4.008 14 C 0.043 3.957 15 H 0.036 0.964 16 C -0.212 4.212 17 N -0.368 5.368 18 C -0.371 4.371 19 H 0.076 0.924 20 C -0.255 4.255 21 N -0.609 5.609 22 Si 0.791 3.209 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.210 1.210 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.214 0.786 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.783 -11.068 12.434 16.878 hybrid contribution -0.430 0.792 -1.215 1.513 sum -3.214 -10.276 11.219 15.549 Atomic orbital electron populations 1.21771 0.95012 1.02108 1.01995 1.21480 0.96360 0.95797 1.02098 1.21236 0.90556 0.98038 1.02494 1.22432 0.95701 0.94126 1.01840 0.88824 1.23167 1.02818 0.99994 0.89720 1.22333 0.96774 0.99720 1.03668 0.85286 1.20192 0.85353 0.82454 0.79570 1.90598 1.69866 1.35387 1.51507 1.47660 1.23674 1.08812 1.52294 1.21902 0.99850 0.85705 0.98043 1.21754 0.85419 1.02826 0.90806 1.20767 0.92038 0.88448 0.94432 0.96388 1.22213 0.97703 1.01289 1.00043 1.42525 1.51245 1.18933 1.24064 1.19401 1.17428 1.01291 0.98945 0.92396 1.25277 1.02336 0.97055 1.00782 1.69736 1.46280 1.09848 1.35052 0.85412 0.78975 0.76551 0.79997 1.21317 1.21620 1.20987 0.92023 0.91865 0.93314 0.93046 0.90979 0.89810 0.92705 0.84963 0.88704 0.90167 0.91826 0.91113 0.88837 0.89773 0.91469 0.94539 0.92507 0.78608 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.12 -2.16 5.89 30.60 0.18 -1.98 16 3 C -0.09 -1.75 5.50 30.59 0.17 -1.58 16 4 C -0.12 -3.05 5.25 -10.79 -0.06 -3.10 16 5 H 0.09 2.76 7.60 -2.39 -0.02 2.74 16 6 C -0.12 -2.47 9.88 30.60 0.30 -2.17 16 7 C -0.20 -5.75 5.01 -11.54 -0.06 -5.81 16 8 H 0.13 3.51 6.44 -2.39 -0.02 3.49 16 9 C 0.53 19.44 7.46 87.66 0.65 20.09 16 10 O -0.59 -25.30 15.84 -3.03 -0.05 -25.35 16 11 N -0.60 -20.75 2.73 -846.73 -2.31 -23.07 16 12 C 0.09 2.72 9.89 127.77 1.26 3.98 16 13 C 0.12 4.03 5.05 86.38 0.44 4.46 16 14 C 0.15 6.42 3.20 44.99 0.14 6.56 16 15 H 0.02 0.87 8.08 -2.38 -0.02 0.85 16 16 C -0.15 -5.57 9.49 71.98 0.68 -4.89 16 17 N -0.72 -35.90 4.57 -322.95 -1.47 -37.38 16 18 C -0.24 -13.38 9.93 84.03 0.83 -12.54 16 19 H 0.06 3.29 7.83 -2.91 -0.02 3.26 16 20 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 21 N -0.96 -55.87 13.06 21.65 0.28 -55.59 16 22 Si 0.96 46.30 29.55 68.60 2.03 48.33 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.08 1.38 7.87 -2.39 -0.02 1.36 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.13 1.92 8.03 -2.39 -0.02 1.90 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 2.34 5.63 -2.39 -0.01 2.33 16 37 H 0.07 2.15 6.00 -2.39 -0.01 2.14 16 38 H 0.09 2.84 8.07 -2.38 -0.02 2.82 16 39 H 0.08 2.86 7.42 -2.39 -0.02 2.84 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.38 19.08 5.33 -92.71 -0.49 18.59 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -67.09 355.18 4.67 -62.42 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.46 Total: 32.24 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 5.73 Total: -1.61 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.50 Total: -116.03 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -67.09 4.67 -62.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507120502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.209 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds