Wall clock time and date at job start Mon Mar 30 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47321 * 2 1 4 4 C 1.53001 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46920 * 304.99357 * 4 3 2 6 6 C 1.52993 * 109.47107 * 64.99538 * 4 3 2 7 7 C 1.50703 * 109.46780 * 184.99647 * 4 3 2 8 8 O 1.21277 * 120.00000 * 327.65835 * 7 4 3 9 9 N 1.34779 * 119.99641 * 147.66042 * 7 4 3 10 10 C 1.47020 * 125.64728 * 4.79765 * 9 7 4 11 11 C 1.54320 * 107.27294 * 180.96853 * 10 9 7 12 12 C 1.55153 * 102.86316 * 22.52709 * 11 10 9 13 13 H 1.09001 * 111.00720 * 82.37818 * 12 11 10 14 14 C 1.52996 * 111.03502 * 206.21335 * 12 11 10 15 15 N 1.46497 * 109.47402 * 287.21122 * 14 12 11 16 16 C 1.36939 * 119.99957 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99661 * 180.02562 * 16 15 14 19 19 N 1.31611 * 119.99768 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99923 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47004 * 90.00624 * 20 18 16 22 22 H 1.48508 * 109.46888 * 210.00422 * 20 18 16 23 23 H 1.48495 * 109.47361 * 330.00619 * 20 18 16 24 24 C 1.47425 * 125.64558 * 185.10530 * 9 7 4 25 25 H 1.08996 * 109.47199 * 300.00496 * 1 2 3 26 26 H 1.09000 * 109.46847 * 60.00849 * 1 2 3 27 27 H 1.08999 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47659 * 239.99352 * 2 1 3 29 29 H 1.09005 * 109.47288 * 119.99267 * 2 1 3 30 30 H 1.09000 * 109.47283 * 59.99122 * 3 2 1 31 31 H 1.09005 * 109.46341 * 299.99847 * 3 2 1 32 32 H 1.09002 * 109.47832 * 52.95489 * 6 4 3 33 33 H 1.09002 * 109.47230 * 292.94841 * 6 4 3 34 34 H 1.09005 * 109.47059 * 172.95856 * 6 4 3 35 35 H 1.08996 * 109.88446 * 300.51581 * 10 9 7 36 36 H 1.09002 * 109.88508 * 61.68172 * 10 9 7 37 37 H 1.09000 * 110.92653 * 264.10883 * 11 10 9 38 38 H 1.09000 * 110.74103 * 140.86069 * 11 10 9 39 39 H 1.08999 * 109.47507 * 47.21952 * 14 12 11 40 40 H 1.09004 * 109.47248 * 167.21422 * 14 12 11 41 41 H 0.96997 * 120.00139 * 0.02562 * 15 14 12 42 42 H 0.97001 * 120.00323 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.36527 * 274.67374 * 24 9 7 44 44 H 1.08995 * 110.36482 * 37.00087 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 4.0724 2.8579 0.1231 8 8 3.4377 3.7711 -0.3607 9 7 5.2271 3.1089 0.7714 10 6 6.1421 2.0949 1.3155 11 6 7.3107 2.8459 1.9878 12 6 6.6989 4.2400 2.2868 13 1 6.1199 4.2228 3.2101 14 6 7.7855 5.3156 2.3443 15 7 8.5603 5.1616 3.5781 16 6 9.5936 6.0183 3.8491 17 1 9.8372 6.8078 3.1536 18 6 10.3281 5.8720 5.0179 19 7 11.3209 6.6957 5.2786 20 14 9.9064 4.5070 6.2213 21 1 10.6797 3.2869 5.8767 22 1 10.2509 4.9385 7.5999 23 1 8.4534 4.2103 6.1440 24 6 5.7785 4.4458 1.0579 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 3.6166 1.3444 -2.1522 33 1 3.8228 -0.2259 -1.3397 34 1 5.1622 0.9461 -1.3642 35 1 5.6210 1.4818 2.0508 36 1 6.5221 1.4676 0.5092 37 1 8.1586 2.9343 1.3087 38 1 7.6083 2.3492 2.9113 39 1 8.4469 5.2104 1.4843 40 1 7.3217 6.3019 2.3273 41 1 8.3414 4.4528 4.2030 42 1 11.8344 6.5933 6.0952 43 1 6.3562 4.8080 0.2075 44 1 4.9762 5.1436 1.2975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567118525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:59 Heat of formation + Delta-G solvation = -46.625272 kcal Electronic energy + Delta-G solvation = -20689.686237 eV Core-core repulsion = 17641.367917 eV Total energy + Delta-G solvation = -3048.318320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.33664 -38.03154 -36.10997 -34.88292 -32.63857 -31.87911 -30.51389 -29.27223 -26.98321 -26.04056 -24.07308 -22.73573 -22.04111 -20.97754 -20.25264 -18.93643 -17.65042 -17.29016 -16.28691 -15.68282 -15.29635 -14.92035 -14.44428 -14.31139 -13.87358 -13.63168 -13.46568 -13.25770 -13.12513 -12.76565 -12.60956 -12.51368 -12.34072 -12.22216 -11.82572 -11.60512 -11.52330 -11.27876 -11.10509 -10.99189 -10.83629 -10.71293 -10.62201 -10.52811 -10.14289 -9.73346 -9.61288 -8.92753 -8.68682 -7.26469 -5.79032 -3.15003 2.55641 2.90012 3.34362 3.36216 3.42757 4.23324 4.43879 4.56247 4.59017 4.61287 4.67772 4.85318 4.92187 4.95083 4.98756 5.17335 5.22737 5.34120 5.37113 5.46935 5.48135 5.51914 5.53938 5.57635 5.65002 5.73591 5.78086 5.80388 5.84755 5.86890 5.91483 6.00306 6.06064 6.09989 6.17855 6.31111 6.60880 6.70278 7.46575 7.96911 8.10056 8.39772 9.18518 9.90586 10.10230 11.39384 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035670 B = 0.003326 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.789668 B = 8416.604143 C = 8721.917318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.107 4.107 5 H 0.089 0.911 6 C -0.140 4.140 7 C 0.531 3.469 8 O -0.543 6.543 9 N -0.618 5.618 10 C 0.100 3.900 11 C -0.125 4.125 12 C -0.110 4.110 13 H 0.084 0.916 14 C 0.169 3.831 15 N -0.754 5.754 16 C -0.245 4.245 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.113 3.887 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.071 0.929 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 -16.304 -11.104 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.128 4.128 5 H 0.107 0.893 6 C -0.198 4.198 7 C 0.320 3.680 8 O -0.421 6.421 9 N -0.352 5.352 10 C -0.023 4.023 11 C -0.163 4.163 12 C -0.130 4.130 13 H 0.102 0.898 14 C 0.041 3.959 15 N -0.400 5.400 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.009 4.009 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.742 -15.636 -11.437 26.269 hybrid contribution -0.041 -0.938 1.104 1.449 sum -17.784 -16.574 -10.332 26.414 Atomic orbital electron populations 1.21765 0.95733 1.01513 1.02011 1.21578 0.96021 0.96494 1.02115 1.21489 0.92209 0.96965 1.03414 1.21306 0.97630 0.93227 1.00652 0.89287 1.21743 1.01260 1.01031 0.95733 1.20361 0.79161 0.91302 0.77191 1.90689 1.56892 1.47093 1.47383 1.48599 1.21559 1.08551 1.56473 1.22125 0.90981 0.91424 0.97799 1.22698 0.96691 0.95501 1.01370 1.22629 0.96969 0.95825 0.97577 0.89792 1.20525 0.90546 0.94753 0.90058 1.42660 1.38282 1.37699 1.21369 1.19059 1.05264 1.08662 1.04461 0.89177 1.24682 0.97858 0.98692 0.97961 1.69698 1.22546 1.39084 1.26840 0.86538 0.77776 0.82634 0.81511 1.21050 1.21721 1.20375 1.22230 0.96908 0.84408 0.97401 0.92714 0.92644 0.92780 0.91664 0.92023 0.91725 0.90741 0.91792 0.91265 0.92295 0.91514 0.91422 0.89870 0.89905 0.95053 0.95163 0.80676 0.93030 0.91052 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.85 5.69 -26.73 -0.15 -1.01 16 3 C -0.10 -0.93 4.22 -26.73 -0.11 -1.04 16 4 C -0.11 -1.00 2.31 -91.77 -0.21 -1.21 16 5 H 0.09 0.71 6.99 -51.93 -0.36 0.35 16 6 C -0.14 -1.10 8.76 37.15 0.33 -0.78 16 7 C 0.53 7.01 6.87 -10.98 -0.08 6.93 16 8 O -0.54 -9.17 16.62 5.56 0.09 -9.08 16 9 N -0.62 -7.79 3.33 -170.53 -0.57 -8.35 16 10 C 0.10 1.02 6.23 -3.07 -0.02 1.00 16 11 C -0.12 -1.54 6.37 -24.90 -0.16 -1.70 16 12 C -0.11 -1.60 3.04 -88.47 -0.27 -1.87 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.17 3.12 5.71 -4.05 -0.02 3.09 16 15 N -0.75 -17.41 5.35 -59.91 -0.32 -17.73 16 16 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 17 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 18 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 20 Si 0.89 21.71 27.74 -169.99 -4.71 17.00 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 24 C 0.11 1.55 6.36 -2.53 -0.02 1.54 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 6.73 -51.93 -0.35 0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.41 6.92 -51.93 -0.36 0.05 16 34 H 0.06 0.46 8.03 -51.93 -0.42 0.05 16 35 H 0.07 0.59 7.64 -51.93 -0.40 0.20 16 36 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 37 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.03 0.58 7.97 -51.93 -0.41 0.17 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.04 5.53 -40.82 -0.23 7.82 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 44 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -32.82 348.74 -8.08 -40.90 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.00 Total: 3.11 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.60 Total: -2.67 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.11 Total: -54.51 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.82 -8.08 -40.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.729 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds