Wall clock time and date at job start Mon Mar 30 2020 00:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47321 * 2 1 4 4 C 1.53001 * 109.47321 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46920 * 304.99357 * 4 3 2 6 6 C 1.52993 * 109.47107 * 64.99538 * 4 3 2 7 7 C 1.50703 * 109.46780 * 184.99647 * 4 3 2 8 8 O 1.21277 * 120.00000 * 327.65835 * 7 4 3 9 9 N 1.34779 * 119.99641 * 147.66042 * 7 4 3 10 10 C 1.47020 * 125.64728 * 4.79765 * 9 7 4 11 11 C 1.54320 * 107.27294 * 180.96853 * 10 9 7 12 12 C 1.55153 * 102.86316 * 22.52709 * 11 10 9 13 13 H 1.09001 * 111.00720 * 82.37818 * 12 11 10 14 14 C 1.52996 * 111.03502 * 206.21335 * 12 11 10 15 15 N 1.46497 * 109.47402 * 287.21122 * 14 12 11 16 16 C 1.36939 * 119.99957 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99661 * 180.02562 * 16 15 14 19 19 N 1.31611 * 119.99768 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99923 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47004 * 90.00624 * 20 18 16 22 22 H 1.48508 * 109.46888 * 210.00422 * 20 18 16 23 23 H 1.48495 * 109.47361 * 330.00619 * 20 18 16 24 24 C 1.47425 * 125.64558 * 185.10530 * 9 7 4 25 25 H 1.08996 * 109.47199 * 300.00496 * 1 2 3 26 26 H 1.09000 * 109.46847 * 60.00849 * 1 2 3 27 27 H 1.08999 * 109.46627 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47659 * 239.99352 * 2 1 3 29 29 H 1.09005 * 109.47288 * 119.99267 * 2 1 3 30 30 H 1.09000 * 109.47283 * 59.99122 * 3 2 1 31 31 H 1.09005 * 109.46341 * 299.99847 * 3 2 1 32 32 H 1.09002 * 109.47832 * 52.95489 * 6 4 3 33 33 H 1.09002 * 109.47230 * 292.94841 * 6 4 3 34 34 H 1.09005 * 109.47059 * 172.95856 * 6 4 3 35 35 H 1.08996 * 109.88446 * 300.51581 * 10 9 7 36 36 H 1.09002 * 109.88508 * 61.68172 * 10 9 7 37 37 H 1.09000 * 110.92653 * 264.10883 * 11 10 9 38 38 H 1.09000 * 110.74103 * 140.86069 * 11 10 9 39 39 H 1.08999 * 109.47507 * 47.21952 * 14 12 11 40 40 H 1.09004 * 109.47248 * 167.21422 * 14 12 11 41 41 H 0.96997 * 120.00139 * 0.02562 * 15 14 12 42 42 H 0.97001 * 120.00323 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.36527 * 274.67374 * 24 9 7 44 44 H 1.08995 * 110.36482 * 37.00087 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8530 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 4.0724 2.8579 0.1231 8 8 3.4377 3.7711 -0.3607 9 7 5.2271 3.1089 0.7714 10 6 6.1421 2.0949 1.3155 11 6 7.3107 2.8459 1.9878 12 6 6.6989 4.2400 2.2868 13 1 6.1199 4.2228 3.2101 14 6 7.7855 5.3156 2.3443 15 7 8.5603 5.1616 3.5781 16 6 9.5936 6.0183 3.8491 17 1 9.8372 6.8078 3.1536 18 6 10.3281 5.8720 5.0179 19 7 11.3209 6.6957 5.2786 20 14 9.9064 4.5070 6.2213 21 1 10.6797 3.2869 5.8767 22 1 10.2509 4.9385 7.5999 23 1 8.4534 4.2103 6.1440 24 6 5.7785 4.4458 1.0579 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 3.6166 1.3444 -2.1522 33 1 3.8228 -0.2259 -1.3397 34 1 5.1622 0.9461 -1.3642 35 1 5.6210 1.4818 2.0508 36 1 6.5221 1.4676 0.5092 37 1 8.1586 2.9343 1.3087 38 1 7.6083 2.3492 2.9113 39 1 8.4469 5.2104 1.4843 40 1 7.3217 6.3019 2.3273 41 1 8.3414 4.4528 4.2030 42 1 11.8344 6.5933 6.0952 43 1 6.3562 4.8080 0.2075 44 1 4.9762 5.1436 1.2975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567118525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:58 Heat of formation + Delta-G solvation = -67.461689 kcal Electronic energy + Delta-G solvation = -20690.589772 eV Core-core repulsion = 17641.367917 eV Total energy + Delta-G solvation = -3049.221854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33730 -39.12296 -36.89153 -36.58271 -34.07662 -32.99810 -31.96103 -30.37488 -27.59319 -27.51508 -25.22080 -23.79286 -23.54698 -21.75184 -21.47101 -19.89664 -19.58065 -18.27529 -17.43094 -16.59451 -16.37105 -16.22507 -15.85961 -15.34670 -14.98787 -14.88077 -14.76816 -14.30236 -14.23591 -14.01283 -13.74841 -13.39873 -13.29657 -13.10975 -13.00216 -12.83330 -12.78013 -12.24693 -12.15788 -12.03716 -11.89812 -11.80638 -11.77085 -11.73476 -11.59650 -11.42475 -10.96788 -10.73326 -9.69749 -9.30529 -8.02168 -5.36715 1.38962 1.43999 1.51288 1.56683 1.93859 2.49874 3.27087 3.29841 3.55659 3.61325 3.76674 3.84254 3.95393 4.09486 4.28148 4.29810 4.32670 4.35916 4.41128 4.50142 4.58591 4.64281 4.75996 4.78889 4.81483 4.87943 4.91568 4.98421 5.00773 5.05622 5.11763 5.18350 5.20711 5.24361 5.32080 5.37695 5.42146 5.49831 5.75610 6.21130 6.50157 7.08056 7.10254 7.82619 8.03830 9.19420 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035670 B = 0.003326 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.789668 B = 8416.604143 C = 8721.917318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.099 4.099 5 H 0.113 0.887 6 C -0.137 4.137 7 C 0.524 3.476 8 O -0.590 6.590 9 N -0.619 5.619 10 C 0.102 3.898 11 C -0.123 4.123 12 C -0.100 4.100 13 H 0.085 0.915 14 C 0.167 3.833 15 N -0.753 5.753 16 C -0.238 4.238 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.299 1.299 23 H -0.249 1.249 24 C 0.116 3.884 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.031 0.969 40 H 0.020 0.980 41 H 0.368 0.632 42 H 0.258 0.742 43 H 0.068 0.932 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.675 -20.021 -10.808 29.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.120 4.120 5 H 0.131 0.869 6 C -0.195 4.195 7 C 0.315 3.685 8 O -0.471 6.471 9 N -0.352 5.352 10 C -0.019 4.019 11 C -0.161 4.161 12 C -0.120 4.120 13 H 0.103 0.897 14 C 0.041 3.959 15 N -0.400 5.400 16 C -0.369 4.369 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.226 1.226 23 H -0.173 1.173 24 C -0.008 4.008 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.949 -19.393 -11.169 29.324 hybrid contribution 0.332 0.342 0.916 1.032 sum -18.618 -19.051 -10.253 28.543 Atomic orbital electron populations 1.21788 0.95769 1.02153 1.01559 1.21552 0.95989 0.94797 1.03236 1.21462 0.92253 0.98333 1.01846 1.21369 0.97507 0.90722 1.02430 0.86877 1.21758 1.01249 1.02259 0.94198 1.21165 0.78663 0.92536 0.76184 1.90667 1.58222 1.48843 1.49368 1.48698 1.21813 1.08469 1.56177 1.22279 0.89843 0.90764 0.99029 1.22703 0.97344 0.94063 1.01953 1.22405 0.95739 0.95917 0.97903 0.89689 1.20621 0.91215 0.95979 0.88134 1.42593 1.37474 1.36947 1.22943 1.19020 1.06154 1.08134 1.03568 0.92900 1.25591 0.97946 1.01910 1.00353 1.69898 1.24320 1.41726 1.27654 0.85338 0.79196 0.79088 0.77731 1.19761 1.22562 1.17308 1.22057 0.96358 0.85355 0.96982 0.93246 0.93136 0.91552 0.90465 0.90830 0.93147 0.92621 0.93160 0.88635 0.91980 0.89029 0.88997 0.90289 0.89062 0.95100 0.96193 0.79793 0.93304 0.91361 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.29 5.69 30.60 0.17 -1.12 16 3 C -0.10 -1.68 4.22 30.60 0.13 -1.55 16 4 C -0.10 -1.59 2.31 -11.54 -0.03 -1.62 16 5 H 0.11 1.29 6.99 -2.39 -0.02 1.27 16 6 C -0.14 -1.75 8.76 71.98 0.63 -1.12 16 7 C 0.52 13.12 6.87 87.66 0.60 13.72 16 8 O -0.59 -20.12 16.62 -3.02 -0.05 -20.17 16 9 N -0.62 -14.30 3.33 -811.81 -2.70 -17.00 16 10 C 0.10 1.69 6.23 86.73 0.54 2.23 16 11 C -0.12 -2.65 6.37 31.78 0.20 -2.45 16 12 C -0.10 -2.73 3.04 -9.40 -0.03 -2.76 16 13 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.17 6.11 5.71 86.38 0.49 6.60 16 15 N -0.75 -34.06 5.35 -343.46 -1.84 -35.90 16 16 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 17 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 18 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 19 N -0.99 -63.12 13.97 21.65 0.30 -62.82 16 20 Si 0.96 44.15 27.74 68.60 1.90 46.05 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 24 C 0.12 3.09 6.36 86.86 0.55 3.64 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.68 6.73 -2.39 -0.02 0.66 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.13 8.01 -2.38 -0.02 1.11 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.74 6.92 -2.39 -0.02 0.72 16 34 H 0.06 0.76 8.03 -2.38 -0.02 0.75 16 35 H 0.09 1.14 7.64 -2.39 -0.02 1.12 16 36 H 0.09 1.15 8.04 -2.39 -0.02 1.13 16 37 H 0.08 1.79 7.92 -2.39 -0.02 1.77 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.03 1.15 7.97 -2.39 -0.02 1.13 16 40 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.37 15.47 5.53 -92.71 -0.51 14.96 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 44 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 Total: -1.00 -73.21 348.74 3.32 -69.88 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.38 Total: 21.45 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.33 Total: -1.50 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -4.24 Total: -115.72 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Total: -73.21 3.32 -69.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.420 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds