Wall clock time and date at job start Mon Mar 30 2020 00:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 C 1.53002 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46971 * 54.99915 * 4 3 2 6 6 C 1.52994 * 109.46858 * 294.99702 * 4 3 2 7 7 C 1.50702 * 109.47171 * 174.99956 * 4 3 2 8 8 O 1.21283 * 119.99455 * 26.16750 * 7 4 3 9 9 N 1.34767 * 120.00061 * 206.17202 * 7 4 3 10 10 C 1.47026 * 125.64703 * 354.83191 * 9 7 4 11 11 C 1.54327 * 107.26821 * 178.97793 * 10 9 7 12 12 C 1.55153 * 102.94670 * 337.80612 * 11 10 9 13 13 H 1.09000 * 111.03828 * 277.41972 * 12 11 10 14 14 C 1.53001 * 111.00785 * 153.57604 * 12 11 10 15 15 N 1.46494 * 109.46979 * 72.80312 * 14 12 11 16 16 C 1.36931 * 120.00045 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00100 * 359.97438 * 16 15 14 18 18 C 1.38819 * 120.00029 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00005 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47241 * 269.99827 * 20 18 16 22 22 H 1.48504 * 109.46994 * 30.00005 * 20 18 16 23 23 H 1.48506 * 109.46818 * 149.99386 * 20 18 16 24 24 C 1.47422 * 125.65094 * 174.87266 * 9 7 4 25 25 H 1.09005 * 109.46660 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46917 * 299.99722 * 1 2 3 27 27 H 1.08996 * 109.46932 * 60.00170 * 1 2 3 28 28 H 1.09000 * 109.47171 * 239.99817 * 2 1 3 29 29 H 1.09005 * 109.46947 * 119.99851 * 2 1 3 30 30 H 1.09000 * 109.47152 * 59.99805 * 3 2 1 31 31 H 1.09005 * 109.46940 * 300.00377 * 3 2 1 32 32 H 1.09002 * 109.46842 * 186.01187 * 6 4 3 33 33 H 1.08997 * 109.47930 * 306.01987 * 6 4 3 34 34 H 1.09005 * 109.47186 * 66.01853 * 6 4 3 35 35 H 1.08997 * 109.87991 * 298.39165 * 10 9 7 36 36 H 1.08998 * 109.88616 * 59.56298 * 10 9 7 37 37 H 1.09000 * 110.71823 * 219.44275 * 11 10 9 38 38 H 1.09003 * 110.71689 * 96.17228 * 11 10 9 39 39 H 1.08998 * 109.46822 * 312.80950 * 14 12 11 40 40 H 1.08993 * 109.47248 * 192.80744 * 14 12 11 41 41 H 0.97001 * 119.99906 * 0.02562 * 15 14 12 42 42 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36611 * 85.25374 * 24 9 7 44 44 H 1.08994 * 110.46279 * 322.98127 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0794 0.8331 1.3083 7 6 4.0725 2.8579 -0.1232 8 8 3.3856 3.7808 0.2606 9 7 5.2849 3.0980 -0.6605 10 6 6.2604 2.0753 -1.0654 11 6 7.4839 2.8142 -1.6475 12 6 6.8959 4.1898 -2.0588 13 1 6.4145 4.1335 -3.0351 14 6 7.9752 5.2741 -2.0445 15 7 8.8733 5.0841 -3.1862 16 6 9.9237 5.9408 -3.3810 17 1 10.0898 6.7568 -2.6932 18 6 10.7744 5.7611 -4.4631 19 7 10.5717 4.7670 -5.3016 20 14 12.2069 6.9302 -4.7292 21 1 11.7680 8.0651 -5.5803 22 1 12.6744 7.4467 -3.4178 23 1 13.3170 6.2079 -5.4010 24 6 5.8530 4.4296 -0.9387 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1641 0.9299 1.3559 33 1 3.6305 1.3566 2.1524 34 1 3.8067 -0.2215 1.3482 35 1 6.5609 1.4860 -0.1991 36 1 5.8237 1.4263 -1.8245 37 1 7.8752 2.2865 -2.5173 38 1 8.2572 2.9365 -0.8891 39 1 8.5458 5.2065 -1.1183 40 1 7.5054 6.2553 -2.1111 41 1 8.7239 4.3515 -3.8041 42 1 11.1664 4.6412 -6.0575 43 1 6.3381 4.8288 -0.0479 44 1 5.0755 5.1110 -1.2839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567118526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:01 Heat of formation + Delta-G solvation = -50.937614 kcal Electronic energy + Delta-G solvation = -20610.368133 eV Core-core repulsion = 17561.862816 eV Total energy + Delta-G solvation = -3048.505317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.25480 -37.91105 -36.04437 -34.69354 -32.61511 -31.79760 -30.15874 -29.02294 -26.92178 -25.78812 -24.04607 -22.62981 -22.35888 -20.92325 -20.05092 -18.86529 -17.32115 -17.00821 -16.23709 -15.64099 -15.21849 -14.85428 -14.37723 -14.23874 -13.79972 -13.53314 -13.32964 -13.17076 -13.03874 -12.68818 -12.54881 -12.45489 -12.27489 -12.15777 -11.66498 -11.47663 -11.21671 -11.16975 -11.04027 -10.87352 -10.77913 -10.67280 -10.48820 -10.38927 -10.05980 -9.74528 -9.63456 -8.89332 -8.59863 -6.94541 -5.78731 -3.07307 2.62935 2.98764 3.42853 3.48141 3.49539 4.31656 4.49673 4.56222 4.65902 4.75323 4.80956 4.91881 4.99162 5.04205 5.09209 5.27771 5.32414 5.41654 5.43951 5.52800 5.55212 5.58364 5.61702 5.64778 5.71284 5.83685 5.89541 5.89998 6.02192 6.03053 6.06923 6.11530 6.13135 6.23990 6.37776 6.43599 6.71484 6.83138 7.55441 7.68735 8.17371 8.40241 9.51663 10.08611 10.43575 11.44219 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047442 B = 0.002977 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.048559 B = 9403.619052 C = 9540.135052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.141 4.141 7 C 0.531 3.469 8 O -0.546 6.546 9 N -0.617 5.617 10 C 0.099 3.901 11 C -0.121 4.121 12 C -0.105 4.105 13 H 0.085 0.915 14 C 0.164 3.836 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.112 3.888 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.326 -11.826 11.318 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.128 4.128 5 H 0.109 0.891 6 C -0.199 4.199 7 C 0.319 3.681 8 O -0.423 6.423 9 N -0.351 5.351 10 C -0.024 4.024 11 C -0.159 4.159 12 C -0.125 4.125 13 H 0.103 0.897 14 C 0.036 3.964 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.208 1.208 23 H -0.218 1.218 24 C -0.010 4.010 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.645 -11.217 11.588 22.470 hybrid contribution 0.909 0.361 -0.535 1.115 sum -14.736 -10.857 11.053 21.382 Atomic orbital electron populations 1.21764 0.95773 1.01470 1.01990 1.21585 0.95990 0.96570 1.02108 1.21470 0.92254 0.96821 1.03425 1.21302 0.97603 0.93308 1.00622 0.89133 1.21759 1.01314 1.01070 0.95730 1.20351 0.79625 0.91383 0.76703 1.90684 1.56346 1.46447 1.48826 1.48593 1.15932 1.08636 1.61896 1.22165 0.89789 0.91266 0.99177 1.22666 0.95780 0.95784 1.01692 1.22570 0.95929 0.95889 0.98104 0.89703 1.20548 0.89666 0.94295 0.91850 1.42308 1.31240 1.35473 1.28507 1.19231 1.03331 1.06796 1.07676 0.91155 1.24740 0.99718 0.98698 0.97852 1.69655 1.40089 1.31929 1.16601 0.86181 0.82121 0.80127 0.77712 1.21712 1.20755 1.21773 1.22244 0.96126 0.84487 0.98182 0.92811 0.92690 0.92702 0.91994 0.91704 0.90862 0.91650 0.92207 0.91920 0.91253 0.91543 0.91497 0.89474 0.90266 0.95951 0.96025 0.78253 0.93513 0.91323 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.13 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.10 -0.97 4.14 -26.73 -0.11 -1.08 16 4 C -0.11 -1.06 2.20 -91.77 -0.20 -1.26 16 5 H 0.09 0.78 7.23 -51.93 -0.38 0.41 16 6 C -0.14 -1.17 8.78 37.15 0.33 -0.84 16 7 C 0.53 7.34 6.94 -10.99 -0.08 7.27 16 8 O -0.55 -9.52 16.51 5.55 0.09 -9.43 16 9 N -0.62 -8.26 3.33 -170.52 -0.57 -8.83 16 10 C 0.10 1.11 6.31 -3.06 -0.02 1.09 16 11 C -0.12 -1.65 6.37 -24.90 -0.16 -1.81 16 12 C -0.11 -1.65 3.05 -88.47 -0.27 -1.92 16 13 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 14 C 0.16 3.21 5.71 -4.04 -0.02 3.19 16 15 N -0.73 -18.08 5.55 -59.91 -0.33 -18.41 16 16 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C 0.11 1.64 6.36 -2.53 -0.02 1.62 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 6.70 -51.93 -0.35 0.08 16 30 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.49 7.25 -51.93 -0.38 0.12 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.44 6.87 -51.93 -0.36 0.09 16 35 H 0.07 0.64 7.25 -51.93 -0.38 0.26 16 36 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 39 H 0.02 0.44 7.97 -51.93 -0.41 0.03 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.38 9.89 7.67 -40.82 -0.31 9.57 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 44 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -31.82 350.37 -8.38 -40.20 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.97 Total: 3.90 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.58 Total: -2.79 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.17 Total: -54.42 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.82 -8.38 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.742 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds