Wall clock time and date at job start Mon Mar 30 2020 00:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47313 * 2 1 4 4 C 1.53002 * 109.47313 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.46971 * 54.99915 * 4 3 2 6 6 C 1.52994 * 109.46858 * 294.99702 * 4 3 2 7 7 C 1.50702 * 109.47171 * 174.99956 * 4 3 2 8 8 O 1.21283 * 119.99455 * 26.16750 * 7 4 3 9 9 N 1.34767 * 120.00061 * 206.17202 * 7 4 3 10 10 C 1.47026 * 125.64703 * 354.83191 * 9 7 4 11 11 C 1.54327 * 107.26821 * 178.97793 * 10 9 7 12 12 C 1.55153 * 102.94670 * 337.80612 * 11 10 9 13 13 H 1.09000 * 111.03828 * 277.41972 * 12 11 10 14 14 C 1.53001 * 111.00785 * 153.57604 * 12 11 10 15 15 N 1.46494 * 109.46979 * 72.80312 * 14 12 11 16 16 C 1.36931 * 120.00045 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00100 * 359.97438 * 16 15 14 18 18 C 1.38819 * 120.00029 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00005 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47241 * 269.99827 * 20 18 16 22 22 H 1.48504 * 109.46994 * 30.00005 * 20 18 16 23 23 H 1.48506 * 109.46818 * 149.99386 * 20 18 16 24 24 C 1.47422 * 125.65094 * 174.87266 * 9 7 4 25 25 H 1.09005 * 109.46660 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46917 * 299.99722 * 1 2 3 27 27 H 1.08996 * 109.46932 * 60.00170 * 1 2 3 28 28 H 1.09000 * 109.47171 * 239.99817 * 2 1 3 29 29 H 1.09005 * 109.46947 * 119.99851 * 2 1 3 30 30 H 1.09000 * 109.47152 * 59.99805 * 3 2 1 31 31 H 1.09005 * 109.46940 * 300.00377 * 3 2 1 32 32 H 1.09002 * 109.46842 * 186.01187 * 6 4 3 33 33 H 1.08997 * 109.47930 * 306.01987 * 6 4 3 34 34 H 1.09005 * 109.47186 * 66.01853 * 6 4 3 35 35 H 1.08997 * 109.87991 * 298.39165 * 10 9 7 36 36 H 1.08998 * 109.88616 * 59.56298 * 10 9 7 37 37 H 1.09000 * 110.71823 * 219.44275 * 11 10 9 38 38 H 1.09003 * 110.71689 * 96.17228 * 11 10 9 39 39 H 1.08998 * 109.46822 * 312.80950 * 14 12 11 40 40 H 1.08993 * 109.47248 * 192.80744 * 14 12 11 41 41 H 0.97001 * 119.99906 * 0.02562 * 15 14 12 42 42 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36611 * 85.25374 * 24 9 7 44 44 H 1.08994 * 110.46279 * 322.98127 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0794 0.8331 1.3083 7 6 4.0725 2.8579 -0.1232 8 8 3.3856 3.7808 0.2606 9 7 5.2849 3.0980 -0.6605 10 6 6.2604 2.0753 -1.0654 11 6 7.4839 2.8142 -1.6475 12 6 6.8959 4.1898 -2.0588 13 1 6.4145 4.1335 -3.0351 14 6 7.9752 5.2741 -2.0445 15 7 8.8733 5.0841 -3.1862 16 6 9.9237 5.9408 -3.3810 17 1 10.0898 6.7568 -2.6932 18 6 10.7744 5.7611 -4.4631 19 7 10.5717 4.7670 -5.3016 20 14 12.2069 6.9302 -4.7292 21 1 11.7680 8.0651 -5.5803 22 1 12.6744 7.4467 -3.4178 23 1 13.3170 6.2079 -5.4010 24 6 5.8530 4.4296 -0.9387 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1641 0.9299 1.3559 33 1 3.6305 1.3566 2.1524 34 1 3.8067 -0.2215 1.3482 35 1 6.5609 1.4860 -0.1991 36 1 5.8237 1.4263 -1.8245 37 1 7.8752 2.2865 -2.5173 38 1 8.2572 2.9365 -0.8891 39 1 8.5458 5.2065 -1.1183 40 1 7.5054 6.2553 -2.1111 41 1 8.7239 4.3515 -3.8041 42 1 11.1664 4.6412 -6.0575 43 1 6.3381 4.8288 -0.0479 44 1 5.0755 5.1110 -1.2839 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567118526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:00 Heat of formation + Delta-G solvation = -70.205062 kcal Electronic energy + Delta-G solvation = -20611.203632 eV Core-core repulsion = 17561.862816 eV Total energy + Delta-G solvation = -3049.340816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33176 -39.07851 -36.87302 -36.44866 -34.01714 -32.88024 -31.66197 -30.26814 -27.57902 -27.33755 -25.35025 -24.01069 -23.53674 -21.70573 -21.36181 -19.86457 -19.14074 -18.24035 -17.45618 -16.56412 -16.40212 -16.21030 -15.71229 -15.36564 -15.01994 -14.82678 -14.76573 -14.23310 -14.18026 -13.89802 -13.68183 -13.37137 -13.10323 -13.01181 -12.94631 -12.81584 -12.74551 -12.23475 -12.14675 -12.11042 -11.87898 -11.77854 -11.77091 -11.67638 -11.58575 -11.41921 -10.93111 -10.73416 -9.69264 -8.99801 -7.95239 -5.23648 1.48395 1.49710 1.57156 1.58142 1.94660 2.56367 3.32844 3.39532 3.64173 3.66423 3.79031 3.86596 3.97358 4.24522 4.29001 4.30707 4.35229 4.37814 4.44929 4.55496 4.59808 4.65756 4.76752 4.79381 4.82092 4.89166 4.92942 5.00356 5.02012 5.06156 5.13073 5.21590 5.23607 5.25456 5.33471 5.39342 5.43111 5.50407 5.50831 6.27263 6.50851 7.10189 7.34338 8.08736 8.33433 9.28173 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047442 B = 0.002977 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.048559 B = 9403.619052 C = 9540.135052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.100 4.100 5 H 0.112 0.888 6 C -0.138 4.138 7 C 0.524 3.476 8 O -0.590 6.590 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.117 4.117 12 C -0.097 4.097 13 H 0.076 0.924 14 C 0.165 3.835 15 N -0.741 5.741 16 C -0.246 4.246 17 H 0.074 0.926 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.289 1.289 22 H -0.270 1.270 23 H -0.294 1.294 24 C 0.117 3.883 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.017 0.983 41 H 0.376 0.624 42 H 0.252 0.748 43 H 0.070 0.930 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.280 -13.384 12.170 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.138 4.138 4 C -0.121 4.121 5 H 0.130 0.870 6 C -0.195 4.195 7 C 0.315 3.685 8 O -0.471 6.471 9 N -0.351 5.351 10 C -0.018 4.018 11 C -0.155 4.155 12 C -0.116 4.116 13 H 0.094 0.906 14 C 0.038 3.962 15 N -0.384 5.384 16 C -0.378 4.378 17 H 0.092 0.908 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.216 1.216 22 H -0.195 1.195 23 H -0.220 1.220 24 C -0.006 4.006 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.209 0.791 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.606 -12.780 12.471 23.715 hybrid contribution 0.848 0.891 -0.764 1.448 sum -14.757 -11.890 11.706 22.275 Atomic orbital electron populations 1.21785 0.95710 1.02157 1.01566 1.21559 0.96048 0.94818 1.03206 1.21443 0.92223 0.98239 1.01852 1.21371 0.97560 0.90737 1.02453 0.87030 1.21774 1.01387 1.02275 0.94086 1.21160 0.79074 0.92676 0.75625 1.90662 1.57492 1.48160 1.50768 1.48688 1.16334 1.08484 1.61578 1.22268 0.88124 0.90592 1.00767 1.22611 0.96808 0.94566 1.01542 1.22345 0.95076 0.96042 0.98154 0.90598 1.20644 0.89913 0.95494 0.90162 1.42469 1.31460 1.34797 1.29688 1.19614 1.03814 1.06933 1.07429 0.90818 1.25536 1.02523 1.00530 0.97999 1.69799 1.41159 1.33693 1.17148 0.85160 0.78878 0.77995 0.77842 1.21589 1.19504 1.22026 1.22058 0.95448 0.85428 0.97671 0.91530 0.93054 0.93301 0.90985 0.90373 0.92522 0.93288 0.91809 0.93041 0.88638 0.88871 0.89363 0.89922 0.90537 0.95469 0.96527 0.79148 0.93942 0.91190 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.45 5.69 30.60 0.17 -1.27 16 3 C -0.10 -1.79 4.14 30.60 0.13 -1.67 16 4 C -0.10 -1.77 2.20 -11.54 -0.03 -1.79 16 5 H 0.11 1.52 7.23 -2.39 -0.02 1.50 16 6 C -0.14 -1.88 8.78 71.98 0.63 -1.25 16 7 C 0.52 13.98 6.94 87.66 0.61 14.59 16 8 O -0.59 -20.83 16.51 -3.04 -0.05 -20.88 16 9 N -0.62 -15.65 3.33 -811.80 -2.70 -18.35 16 10 C 0.10 2.04 6.31 86.73 0.55 2.59 16 11 C -0.12 -3.02 6.37 31.78 0.20 -2.82 16 12 C -0.10 -2.99 3.05 -9.40 -0.03 -3.01 16 13 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 14 C 0.16 6.43 5.71 86.38 0.49 6.92 16 15 N -0.74 -36.84 5.55 -343.47 -1.91 -38.75 16 16 C -0.25 -13.63 9.99 84.04 0.84 -12.79 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 19 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 20 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 C 0.12 3.38 6.36 86.86 0.55 3.94 16 25 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.08 0.76 6.70 -2.38 -0.02 0.75 16 30 H 0.06 1.20 8.03 -2.39 -0.02 1.18 16 31 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.06 0.83 7.25 -2.39 -0.02 0.82 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.83 6.87 -2.38 -0.02 0.81 16 35 H 0.09 1.41 7.25 -2.39 -0.02 1.39 16 36 H 0.09 1.42 7.68 -2.39 -0.02 1.40 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 2.02 7.91 -2.39 -0.02 2.00 16 39 H 0.03 1.05 7.97 -2.39 -0.02 1.03 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.38 19.62 7.67 -92.71 -0.71 18.91 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.07 1.99 8.04 -2.39 -0.02 1.98 16 44 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 Total: -1.00 -68.67 350.37 3.20 -65.47 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.24 Total: 24.15 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 5.30 Total: -1.45 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.32 Total: -115.07 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -68.67 3.20 -65.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.730 kcal (2) G-P(sol) polarization free energy of solvation -68.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds