Wall clock time and date at job start Mon Mar 30 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46985 * 2 1 4 4 C 1.53006 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46931 * 55.00176 * 4 3 2 6 6 C 1.53000 * 109.47043 * 294.99801 * 4 3 2 7 7 C 1.50700 * 109.47001 * 175.00089 * 4 3 2 8 8 O 1.21287 * 119.99917 * 34.45532 * 7 4 3 9 9 N 1.34779 * 120.00127 * 214.45799 * 7 4 3 10 10 C 1.47022 * 125.64350 * 5.30624 * 9 7 4 11 11 C 1.54329 * 107.26870 * 181.02203 * 10 9 7 12 12 C 1.55157 * 102.94052 * 22.19440 * 11 10 9 13 13 H 1.09003 * 111.00389 * 82.57195 * 12 11 10 14 14 C 1.53004 * 111.00526 * 206.38507 * 12 11 10 15 15 N 1.46500 * 109.46827 * 293.54731 * 14 12 11 16 16 C 1.36937 * 119.99954 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99750 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00014 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00361 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47178 * 89.99996 * 20 18 16 22 22 H 1.48502 * 109.46764 * 210.00149 * 20 18 16 23 23 H 1.48497 * 109.47014 * 329.99788 * 20 18 16 24 24 C 1.47419 * 125.64721 * 185.00044 * 9 7 4 25 25 H 1.09006 * 109.46798 * 299.99653 * 1 2 3 26 26 H 1.08993 * 109.47624 * 59.99559 * 1 2 3 27 27 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46798 * 240.00347 * 2 1 3 29 29 H 1.09001 * 109.47559 * 120.00770 * 2 1 3 30 30 H 1.08992 * 109.47292 * 60.00637 * 3 2 1 31 31 H 1.08997 * 109.47189 * 299.99904 * 3 2 1 32 32 H 1.08994 * 109.47494 * 296.03607 * 6 4 3 33 33 H 1.08995 * 109.46983 * 176.02758 * 6 4 3 34 34 H 1.09007 * 109.46986 * 56.03037 * 6 4 3 35 35 H 1.08998 * 109.88322 * 300.43757 * 10 9 7 36 36 H 1.08994 * 109.88509 * 61.45471 * 10 9 7 37 37 H 1.08996 * 110.71941 * 140.55431 * 11 10 9 38 38 H 1.08995 * 110.71918 * 263.65600 * 11 10 9 39 39 H 1.09000 * 109.46658 * 53.54175 * 14 12 11 40 40 H 1.09002 * 109.47124 * 173.54640 * 14 12 11 41 41 H 0.96998 * 119.99963 * 359.97438 * 15 14 12 42 42 H 0.97005 * 120.00156 * 179.97438 * 19 18 16 43 43 H 1.09008 * 110.36439 * 274.74085 * 24 9 7 44 44 H 1.08995 * 110.36816 * 37.06779 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.4581 3.7668 0.3930 9 7 5.2040 3.1138 -0.8102 10 6 5.9833 2.1295 -1.5753 11 6 7.2028 2.8691 -2.1649 12 6 7.3463 4.1010 -1.2326 13 1 7.8907 3.8423 -0.3244 14 6 8.0221 5.2644 -1.9611 15 7 9.4092 4.9078 -2.2693 16 6 10.2159 5.7994 -2.9245 17 1 9.8297 6.7657 -3.2137 18 6 11.5303 5.4617 -3.2161 19 7 12.0012 4.2844 -2.8633 20 14 12.6311 6.6784 -4.1093 21 1 13.3320 7.5326 -3.1172 22 1 13.6314 5.9383 -4.9198 23 1 11.8049 7.5313 -5.0009 24 6 5.8619 4.4283 -0.9225 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7768 1.4611 2.1436 33 1 5.1681 0.7678 1.2766 34 1 3.6602 -0.1655 1.4302 35 1 6.3186 1.3288 -0.9161 36 1 5.3731 1.7171 -2.3787 37 1 8.0938 2.2431 -2.1167 38 1 7.0064 3.1795 -3.1911 39 1 7.4864 5.4735 -2.8870 40 1 8.0072 6.1493 -1.3248 41 1 9.7561 4.0401 -2.0093 42 1 12.9196 4.0483 -3.0674 43 1 5.4205 5.0052 -1.7353 44 1 5.7825 4.9738 0.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567118527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:03 Heat of formation + Delta-G solvation = -50.811041 kcal Electronic energy + Delta-G solvation = -20619.522819 eV Core-core repulsion = 17571.022991 eV Total energy + Delta-G solvation = -3048.499828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24215 -37.91150 -36.05831 -34.68855 -32.56664 -31.81337 -30.13537 -29.04142 -26.92966 -25.80147 -24.01129 -22.65235 -22.39663 -20.92248 -20.01735 -18.81646 -17.32995 -16.95822 -16.22201 -15.57694 -15.55256 -14.66990 -14.40093 -14.11542 -13.86923 -13.52556 -13.33156 -13.21528 -13.03677 -12.69410 -12.52009 -12.44711 -12.25724 -12.13794 -11.64302 -11.47713 -11.24757 -11.18711 -11.04639 -10.86956 -10.78274 -10.66195 -10.47334 -10.39235 -10.05732 -9.73803 -9.63023 -8.89577 -8.59645 -6.94631 -5.78858 -3.07447 2.62423 2.99196 3.42772 3.48110 3.49493 4.31385 4.49962 4.56101 4.65929 4.76423 4.81270 4.92840 4.99286 5.06429 5.09513 5.27269 5.32275 5.41301 5.47354 5.50871 5.55295 5.58535 5.62315 5.64286 5.71024 5.83976 5.88567 5.89771 6.02790 6.04086 6.07005 6.11421 6.11767 6.24841 6.38356 6.45717 6.70902 6.83580 7.55694 7.68677 8.17467 8.40157 9.51622 10.08478 10.43536 11.44086 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051125 B = 0.002981 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.543584 B = 9389.746356 C = 9580.290924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.107 4.107 5 H 0.088 0.912 6 C -0.141 4.141 7 C 0.531 3.469 8 O -0.546 6.546 9 N -0.617 5.617 10 C 0.099 3.901 11 C -0.121 4.121 12 C -0.105 4.105 13 H 0.084 0.916 14 C 0.164 3.836 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.112 3.888 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.878 -10.627 5.301 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.128 4.128 5 H 0.107 0.893 6 C -0.199 4.199 7 C 0.320 3.680 8 O -0.423 6.423 9 N -0.351 5.351 10 C -0.024 4.024 11 C -0.158 4.158 12 C -0.125 4.125 13 H 0.102 0.898 14 C 0.036 3.964 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.011 4.011 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.222 -10.012 5.525 22.366 hybrid contribution 0.938 0.331 -0.514 1.120 sum -18.283 -9.680 5.011 21.286 Atomic orbital electron populations 1.21764 0.95764 1.01493 1.01975 1.21596 0.95977 0.96537 1.02169 1.21475 0.92336 0.96946 1.03337 1.21301 0.97516 0.93262 1.00725 0.89346 1.21751 1.01328 1.01103 0.95674 1.20354 0.79120 0.91151 0.77406 1.90683 1.56348 1.47265 1.48050 1.48613 1.24930 1.11243 1.50269 1.22154 0.93270 0.92049 0.94927 1.22635 0.96616 0.96904 0.99690 1.22603 0.93817 0.96619 0.99411 0.89767 1.20551 0.86720 0.93390 0.95742 1.42303 1.06720 1.18615 1.69882 1.19231 0.92378 0.96554 1.28849 0.91158 1.24734 0.97296 0.97114 1.01855 1.69654 1.15745 1.20502 1.52392 0.86182 0.80556 0.80174 0.79237 1.21718 1.21774 1.20757 1.22296 0.91953 0.84831 1.01971 0.92668 0.92739 0.92790 0.91986 0.91597 0.90757 0.91787 0.91886 0.92156 0.91144 0.91498 0.91611 0.89466 0.90195 0.95973 0.96012 0.78242 0.93515 0.91260 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.90 5.69 -26.73 -0.15 -1.05 16 3 C -0.10 -0.97 4.25 -26.73 -0.11 -1.08 16 4 C -0.11 -1.07 2.43 -91.77 -0.22 -1.29 16 5 H 0.09 0.76 7.00 -51.93 -0.36 0.39 16 6 C -0.14 -1.24 9.02 37.16 0.34 -0.91 16 7 C 0.53 7.37 6.85 -10.98 -0.08 7.30 16 8 O -0.55 -9.53 16.66 5.55 0.09 -9.44 16 9 N -0.62 -8.31 3.32 -170.38 -0.57 -8.88 16 10 C 0.10 1.13 5.96 -3.06 -0.02 1.11 16 11 C -0.12 -1.67 6.12 -24.89 -0.15 -1.82 16 12 C -0.11 -1.64 3.12 -88.35 -0.28 -1.92 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.16 3.20 5.71 -4.04 -0.02 3.18 16 15 N -0.73 -18.02 5.45 -59.91 -0.33 -18.35 16 16 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.11 1.64 6.36 -2.41 -0.02 1.62 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.43 6.48 -51.93 -0.34 0.10 16 30 H 0.07 0.79 8.01 -51.93 -0.42 0.37 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 6.39 -51.93 -0.33 0.15 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.65 8.00 -51.93 -0.42 0.23 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.16 8.02 -51.93 -0.42 0.74 16 39 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 9.84 7.53 -40.82 -0.31 9.53 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.01 8.04 -51.92 -0.42 0.59 16 44 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -31.73 351.65 -8.43 -40.16 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.04 Total: 3.88 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.59 Total: -2.79 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.17 Total: -54.36 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.73 -8.43 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.647 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds