Wall clock time and date at job start Mon Mar 30 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46985 * 2 1 4 4 C 1.53006 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46931 * 55.00176 * 4 3 2 6 6 C 1.53000 * 109.47043 * 294.99801 * 4 3 2 7 7 C 1.50700 * 109.47001 * 175.00089 * 4 3 2 8 8 O 1.21287 * 119.99917 * 34.45532 * 7 4 3 9 9 N 1.34779 * 120.00127 * 214.45799 * 7 4 3 10 10 C 1.47022 * 125.64350 * 5.30624 * 9 7 4 11 11 C 1.54329 * 107.26870 * 181.02203 * 10 9 7 12 12 C 1.55157 * 102.94052 * 22.19440 * 11 10 9 13 13 H 1.09003 * 111.00389 * 82.57195 * 12 11 10 14 14 C 1.53004 * 111.00526 * 206.38507 * 12 11 10 15 15 N 1.46500 * 109.46827 * 293.54731 * 14 12 11 16 16 C 1.36937 * 119.99954 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99750 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00014 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00361 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99827 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47178 * 89.99996 * 20 18 16 22 22 H 1.48502 * 109.46764 * 210.00149 * 20 18 16 23 23 H 1.48497 * 109.47014 * 329.99788 * 20 18 16 24 24 C 1.47419 * 125.64721 * 185.00044 * 9 7 4 25 25 H 1.09006 * 109.46798 * 299.99653 * 1 2 3 26 26 H 1.08993 * 109.47624 * 59.99559 * 1 2 3 27 27 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46798 * 240.00347 * 2 1 3 29 29 H 1.09001 * 109.47559 * 120.00770 * 2 1 3 30 30 H 1.08992 * 109.47292 * 60.00637 * 3 2 1 31 31 H 1.08997 * 109.47189 * 299.99904 * 3 2 1 32 32 H 1.08994 * 109.47494 * 296.03607 * 6 4 3 33 33 H 1.08995 * 109.46983 * 176.02758 * 6 4 3 34 34 H 1.09007 * 109.46986 * 56.03037 * 6 4 3 35 35 H 1.08998 * 109.88322 * 300.43757 * 10 9 7 36 36 H 1.08994 * 109.88509 * 61.45471 * 10 9 7 37 37 H 1.08996 * 110.71941 * 140.55431 * 11 10 9 38 38 H 1.08995 * 110.71918 * 263.65600 * 11 10 9 39 39 H 1.09000 * 109.46658 * 53.54175 * 14 12 11 40 40 H 1.09002 * 109.47124 * 173.54640 * 14 12 11 41 41 H 0.96998 * 119.99963 * 359.97438 * 15 14 12 42 42 H 0.97005 * 120.00156 * 179.97438 * 19 18 16 43 43 H 1.09008 * 110.36439 * 274.74085 * 24 9 7 44 44 H 1.08995 * 110.36816 * 37.06779 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9329 0.8532 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.4581 3.7668 0.3930 9 7 5.2040 3.1138 -0.8102 10 6 5.9833 2.1295 -1.5753 11 6 7.2028 2.8691 -2.1649 12 6 7.3463 4.1010 -1.2326 13 1 7.8907 3.8423 -0.3244 14 6 8.0221 5.2644 -1.9611 15 7 9.4092 4.9078 -2.2693 16 6 10.2159 5.7994 -2.9245 17 1 9.8297 6.7657 -3.2137 18 6 11.5303 5.4617 -3.2161 19 7 12.0012 4.2844 -2.8633 20 14 12.6311 6.6784 -4.1093 21 1 13.3320 7.5326 -3.1172 22 1 13.6314 5.9383 -4.9198 23 1 11.8049 7.5313 -5.0009 24 6 5.8619 4.4283 -0.9225 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7768 1.4611 2.1436 33 1 5.1681 0.7678 1.2766 34 1 3.6602 -0.1655 1.4302 35 1 6.3186 1.3288 -0.9161 36 1 5.3731 1.7171 -2.3787 37 1 8.0938 2.2431 -2.1167 38 1 7.0064 3.1795 -3.1911 39 1 7.4864 5.4735 -2.8870 40 1 8.0072 6.1493 -1.3248 41 1 9.7561 4.0401 -2.0093 42 1 12.9196 4.0483 -3.0674 43 1 5.4205 5.0052 -1.7353 44 1 5.7825 4.9738 0.0178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567118527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:03 Heat of formation + Delta-G solvation = -69.885644 kcal Electronic energy + Delta-G solvation = -20620.349956 eV Core-core repulsion = 17571.022991 eV Total energy + Delta-G solvation = -3049.326965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32570 -39.08347 -36.88573 -36.44137 -33.99433 -32.86525 -31.65389 -30.29015 -27.59707 -27.35423 -25.32303 -24.03526 -23.57153 -21.69295 -21.34038 -19.81888 -19.16177 -18.19517 -17.43729 -16.64098 -16.50139 -16.20999 -15.60747 -15.35993 -15.03723 -14.87958 -14.74693 -14.21518 -14.12283 -13.87349 -13.76848 -13.38060 -13.10264 -13.02851 -12.93867 -12.78270 -12.74649 -12.24827 -12.15793 -12.12477 -11.89215 -11.83394 -11.71104 -11.62979 -11.62368 -11.40799 -10.93332 -10.72766 -9.69726 -8.99496 -7.95027 -5.23367 1.48546 1.49728 1.56091 1.58153 1.94484 2.56436 3.32489 3.39351 3.63694 3.65988 3.80010 3.86630 3.98713 4.24359 4.29191 4.31016 4.35164 4.38219 4.43470 4.54666 4.60762 4.63527 4.77712 4.79745 4.82226 4.87175 4.89967 5.01385 5.02029 5.06095 5.11830 5.20062 5.22182 5.25877 5.33201 5.40458 5.43422 5.50445 5.51101 6.27527 6.50409 7.09756 7.34744 8.09004 8.34038 9.28334 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.051125 B = 0.002981 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.543584 B = 9389.746356 C = 9580.290924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.100 4.100 5 H 0.112 0.888 6 C -0.138 4.138 7 C 0.525 3.475 8 O -0.590 6.590 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.117 4.117 12 C -0.096 4.096 13 H 0.078 0.922 14 C 0.164 3.836 15 N -0.741 5.741 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.972 3.028 21 H -0.289 1.289 22 H -0.294 1.294 23 H -0.271 1.271 24 C 0.117 3.883 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.018 0.982 41 H 0.377 0.623 42 H 0.252 0.748 43 H 0.069 0.931 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.606 -11.977 4.851 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.121 4.121 5 H 0.130 0.870 6 C -0.196 4.196 7 C 0.315 3.685 8 O -0.470 6.470 9 N -0.351 5.351 10 C -0.017 4.017 11 C -0.155 4.155 12 C -0.115 4.115 13 H 0.096 0.904 14 C 0.037 3.963 15 N -0.384 5.384 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.801 3.199 21 H -0.216 1.216 22 H -0.220 1.220 23 H -0.196 1.196 24 C -0.006 4.006 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.209 0.791 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.976 -11.360 5.069 23.533 hybrid contribution 1.111 0.800 -0.355 1.414 sum -18.866 -10.561 4.714 22.128 Atomic orbital electron populations 1.21782 0.95630 1.02167 1.01611 1.21574 0.96091 0.94810 1.03227 1.21448 0.92037 0.98383 1.01958 1.21373 0.97694 0.90721 1.02309 0.86964 1.21765 1.01574 1.01972 0.94261 1.21149 0.78556 0.92418 0.76347 1.90661 1.57634 1.48934 1.49802 1.48710 1.24997 1.11075 1.50316 1.22246 0.92194 0.91509 0.95799 1.22569 0.97766 0.96120 0.99021 1.22383 0.93941 0.96074 0.99119 0.90365 1.20643 0.84676 0.94858 0.96097 1.42457 1.08377 1.17933 1.69603 1.19608 0.92958 0.97005 1.28213 0.90865 1.25523 0.98774 0.98906 1.03338 1.69795 1.15818 1.22211 1.53935 0.85167 0.78588 0.78089 0.78070 1.21575 1.22028 1.19563 1.22115 0.91268 0.85782 1.01452 0.93142 0.93105 0.91565 0.90788 0.90557 0.92587 0.92865 0.93483 0.91912 0.88582 0.89261 0.89056 0.89964 0.90816 0.95641 0.96446 0.79077 0.93937 0.91253 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.40 5.69 30.59 0.17 -1.23 16 3 C -0.10 -1.75 4.25 30.60 0.13 -1.62 16 4 C -0.10 -1.78 2.43 -11.54 -0.03 -1.80 16 5 H 0.11 1.48 7.00 -2.39 -0.02 1.46 16 6 C -0.14 -2.11 9.02 71.98 0.65 -1.46 16 7 C 0.52 14.03 6.85 87.66 0.60 14.63 16 8 O -0.59 -20.77 16.66 -3.05 -0.05 -20.82 16 9 N -0.62 -15.75 3.32 -811.34 -2.70 -18.44 16 10 C 0.10 2.09 5.96 86.73 0.52 2.60 16 11 C -0.12 -3.08 6.12 31.78 0.19 -2.89 16 12 C -0.10 -2.95 3.12 -9.32 -0.03 -2.98 16 13 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 14 C 0.16 6.40 5.71 86.38 0.49 6.90 16 15 N -0.74 -36.69 5.45 -343.45 -1.87 -38.56 16 16 C -0.25 -13.61 9.99 84.03 0.84 -12.77 16 17 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 19 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 20 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C 0.12 3.37 6.36 86.94 0.55 3.93 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.08 0.75 6.48 -2.39 -0.02 0.74 16 30 H 0.06 1.18 8.01 -2.39 -0.02 1.16 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 0.98 6.39 -2.38 -0.02 0.96 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.09 1.44 8.00 -2.39 -0.02 1.42 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.04 8.02 -2.39 -0.02 2.02 16 39 H 0.03 0.99 8.11 -2.39 -0.02 0.97 16 40 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.38 19.51 7.53 -92.71 -0.70 18.82 16 42 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 43 H 0.07 1.99 8.04 -2.38 -0.02 1.97 16 44 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 Total: -1.00 -68.27 351.65 3.21 -65.05 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.25 Total: 24.23 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.27 Total: -1.44 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.29 Total: -114.76 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -68.27 3.21 -65.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.832 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds