Wall clock time and date at job start Mon Mar 30 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 C 1.52996 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47180 * 305.00423 * 4 3 2 6 6 C 1.53003 * 109.47195 * 65.00053 * 4 3 2 7 7 C 1.50697 * 109.47150 * 185.00540 * 4 3 2 8 8 O 1.21280 * 119.99741 * 334.10861 * 7 4 3 9 9 N 1.34782 * 120.00198 * 154.12410 * 7 4 3 10 10 C 1.47029 * 125.64392 * 354.66141 * 9 7 4 11 11 C 1.54320 * 107.26551 * 178.91340 * 10 9 7 12 12 C 1.55150 * 102.94620 * 337.80838 * 11 10 9 13 13 H 1.08999 * 111.00667 * 277.38862 * 12 11 10 14 14 C 1.53004 * 111.00729 * 153.57422 * 12 11 10 15 15 N 1.46505 * 109.46702 * 69.58507 * 14 12 11 16 16 C 1.36933 * 119.99840 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99926 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99804 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00259 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46894 * 270.00197 * 20 18 16 22 22 H 1.48505 * 109.47224 * 29.99864 * 20 18 16 23 23 H 1.48496 * 109.47681 * 149.99925 * 20 18 16 24 24 C 1.47459 * 125.63147 * 174.59365 * 9 7 4 25 25 H 1.08994 * 109.47022 * 299.99599 * 1 2 3 26 26 H 1.09003 * 109.46596 * 60.00064 * 1 2 3 27 27 H 1.09006 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46792 * 240.00118 * 2 1 3 29 29 H 1.08997 * 109.47199 * 120.00595 * 2 1 3 30 30 H 1.09005 * 109.47035 * 59.99889 * 3 2 1 31 31 H 1.08998 * 109.47083 * 300.00169 * 3 2 1 32 32 H 1.08997 * 109.46989 * 64.33834 * 6 4 3 33 33 H 1.09000 * 109.47013 * 184.33886 * 6 4 3 34 34 H 1.09007 * 109.46875 * 304.33938 * 6 4 3 35 35 H 1.09003 * 109.87856 * 59.50090 * 10 9 7 36 36 H 1.08998 * 109.88187 * 298.32865 * 10 9 7 37 37 H 1.09005 * 110.72085 * 219.44311 * 11 10 9 38 38 H 1.09001 * 110.87088 * 96.24593 * 11 10 9 39 39 H 1.08996 * 109.46852 * 309.58600 * 14 12 11 40 40 H 1.08998 * 109.47632 * 189.58001 * 14 12 11 41 41 H 0.97002 * 120.00183 * 359.97438 * 15 14 12 42 42 H 0.97007 * 119.99890 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.35247 * 85.31031 * 24 9 7 44 44 H 1.09007 * 110.40542 * 322.97549 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8327 -1.3064 7 6 4.0723 2.8579 0.1246 8 8 3.3837 3.7811 -0.2554 9 7 5.2868 3.0978 0.6574 10 6 6.1743 2.0897 1.2557 11 6 7.4586 2.8184 1.7040 12 6 7.4592 4.0955 0.8230 13 1 7.8728 3.8891 -0.1641 14 6 8.2208 5.2330 1.5065 15 7 9.6510 4.9166 1.5325 16 6 10.5361 5.7941 2.0996 17 1 10.1799 6.7197 2.5273 18 6 11.8912 5.4940 2.1247 19 7 12.7420 6.3377 2.6693 20 14 12.5072 3.8929 1.3857 21 1 12.5070 2.8345 2.4274 22 1 11.6162 3.4881 0.2687 23 1 13.8879 4.0830 0.8734 24 6 5.9459 4.4146 0.7354 25 1 -0.3633 0.5137 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7825 1.4646 -2.1430 33 1 5.1678 0.7619 -1.2740 34 1 3.6552 -0.1629 -1.4334 35 1 6.4196 1.3267 0.5170 36 1 5.6879 1.6321 2.1171 37 1 8.3390 2.2089 1.5001 38 1 7.4083 3.0791 2.7612 39 1 7.8564 5.3525 2.5268 40 1 8.0636 6.1592 0.9537 41 1 9.9708 4.0851 1.1487 42 1 13.6890 6.1279 2.6872 43 1 5.6188 4.9500 1.6267 44 1 5.7327 4.9999 -0.1592 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567118528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:06 Heat of formation + Delta-G solvation = -46.381029 kcal Electronic energy + Delta-G solvation = -20700.931621 eV Core-core repulsion = 17652.623893 eV Total energy + Delta-G solvation = -3048.307728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.33540 -38.03061 -36.11523 -34.88378 -32.64424 -31.86738 -30.49805 -29.28029 -26.97197 -26.03618 -24.07379 -22.75666 -22.05663 -20.94803 -20.23629 -18.94623 -17.68230 -17.15035 -16.28773 -15.69685 -15.60471 -14.69849 -14.41206 -14.29768 -13.95034 -13.61769 -13.43258 -13.32940 -13.09618 -12.78373 -12.60460 -12.48108 -12.34940 -12.18708 -11.79860 -11.61622 -11.52721 -11.25465 -11.12668 -10.98534 -10.82774 -10.71072 -10.61372 -10.52764 -10.14401 -9.73810 -9.61357 -8.92940 -8.68396 -7.26563 -5.79095 -3.15069 2.55606 2.90314 3.34137 3.35890 3.42599 4.23182 4.44037 4.56115 4.59811 4.61863 4.67703 4.85503 4.92811 4.95518 4.99104 5.15260 5.23804 5.35083 5.36282 5.47095 5.47651 5.51834 5.55085 5.58145 5.65012 5.73458 5.78656 5.79984 5.84792 5.86939 5.92227 6.01975 6.06714 6.11261 6.17471 6.31964 6.60649 6.70448 7.46829 7.96786 8.10042 8.39699 9.18420 9.90474 10.10158 11.39305 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042997 B = 0.003277 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.049346 B = 8542.589978 C = 8891.641017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.107 4.107 5 H 0.089 0.911 6 C -0.142 4.142 7 C 0.531 3.469 8 O -0.543 6.543 9 N -0.618 5.618 10 C 0.100 3.900 11 C -0.125 4.125 12 C -0.110 4.110 13 H 0.083 0.917 14 C 0.169 3.831 15 N -0.754 5.754 16 C -0.244 4.244 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.277 1.277 23 H -0.291 1.291 24 C 0.113 3.887 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.071 0.929 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.631 -15.478 -5.398 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.128 4.128 5 H 0.107 0.893 6 C -0.199 4.199 7 C 0.320 3.680 8 O -0.421 6.421 9 N -0.352 5.352 10 C -0.023 4.023 11 C -0.163 4.163 12 C -0.130 4.130 13 H 0.102 0.898 14 C 0.041 3.959 15 N -0.400 5.400 16 C -0.374 4.374 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.204 1.204 23 H -0.217 1.217 24 C -0.009 4.009 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.193 0.807 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.989 -14.789 -5.515 26.261 hybrid contribution 0.768 -1.120 -0.405 1.417 sum -20.221 -15.908 -5.920 26.401 Atomic orbital electron populations 1.21765 0.95733 1.01496 1.02008 1.21601 0.96026 0.96563 1.02110 1.21462 0.92268 0.96832 1.03457 1.21301 0.97607 0.93240 1.00639 0.89259 1.21766 1.01303 1.01186 0.95692 1.20357 0.79649 0.91365 0.76650 1.90691 1.55507 1.46312 1.49559 1.48597 1.17187 1.10120 1.59256 1.22133 0.91150 0.91591 0.97468 1.22686 0.95999 0.96605 1.00964 1.22622 0.93832 0.96376 1.00138 0.89817 1.20527 0.84259 0.93889 0.97223 1.42656 1.02058 1.22932 1.72358 1.19058 0.87635 1.00514 1.30215 0.89180 1.24682 0.95801 0.97966 1.00768 1.69704 1.02276 1.36294 1.49895 0.86536 0.78187 0.84605 0.79124 1.21050 1.20372 1.21730 1.22235 0.91382 0.84855 1.02462 0.92712 0.92652 0.92795 0.91644 0.92023 0.91651 0.90810 0.91951 0.92152 0.91092 0.91482 0.91451 0.89940 0.89850 0.95067 0.95152 0.80673 0.93036 0.91048 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.85 5.69 -26.73 -0.15 -1.00 16 3 C -0.10 -0.92 4.14 -26.73 -0.11 -1.03 16 4 C -0.11 -1.00 2.29 -91.77 -0.21 -1.21 16 5 H 0.09 0.70 7.28 -51.93 -0.38 0.32 16 6 C -0.14 -1.15 9.03 37.16 0.34 -0.81 16 7 C 0.53 7.00 6.94 -10.98 -0.08 6.92 16 8 O -0.54 -9.16 16.51 5.56 0.09 -9.06 16 9 N -0.62 -7.77 3.33 -170.49 -0.57 -8.34 16 10 C 0.10 1.02 6.08 -3.06 -0.02 1.00 16 11 C -0.12 -1.55 6.28 -24.90 -0.16 -1.71 16 12 C -0.11 -1.59 3.07 -88.47 -0.27 -1.86 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.17 3.11 5.70 -4.04 -0.02 3.09 16 15 N -0.75 -17.37 5.30 -59.90 -0.32 -17.69 16 16 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 17 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 19 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 20 Si 0.89 21.68 27.74 -169.99 -4.71 16.97 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 C 0.11 1.55 6.36 -2.51 -0.02 1.54 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 6.48 -51.93 -0.34 0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.48 7.60 -51.93 -0.39 0.08 16 34 H 0.07 0.44 6.37 -51.92 -0.33 0.11 16 35 H 0.07 0.59 7.60 -51.93 -0.39 0.20 16 36 H 0.07 0.59 8.01 -51.93 -0.42 0.18 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 39 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.36 8.02 5.49 -40.82 -0.22 7.79 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 44 H 0.08 1.11 8.09 -51.92 -0.42 0.69 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -32.76 347.68 -8.03 -40.79 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.96 Total: 3.19 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.58 Total: -2.68 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.11 Total: -54.44 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.76 -8.03 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.591 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds