Wall clock time and date at job start Mon Mar 30 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 C 1.52996 * 109.47182 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47180 * 305.00423 * 4 3 2 6 6 C 1.53003 * 109.47195 * 65.00053 * 4 3 2 7 7 C 1.50697 * 109.47150 * 185.00540 * 4 3 2 8 8 O 1.21280 * 119.99741 * 334.10861 * 7 4 3 9 9 N 1.34782 * 120.00198 * 154.12410 * 7 4 3 10 10 C 1.47029 * 125.64392 * 354.66141 * 9 7 4 11 11 C 1.54320 * 107.26551 * 178.91340 * 10 9 7 12 12 C 1.55150 * 102.94620 * 337.80838 * 11 10 9 13 13 H 1.08999 * 111.00667 * 277.38862 * 12 11 10 14 14 C 1.53004 * 111.00729 * 153.57422 * 12 11 10 15 15 N 1.46505 * 109.46702 * 69.58507 * 14 12 11 16 16 C 1.36933 * 119.99840 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99926 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99804 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00259 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46894 * 270.00197 * 20 18 16 22 22 H 1.48505 * 109.47224 * 29.99864 * 20 18 16 23 23 H 1.48496 * 109.47681 * 149.99925 * 20 18 16 24 24 C 1.47459 * 125.63147 * 174.59365 * 9 7 4 25 25 H 1.08994 * 109.47022 * 299.99599 * 1 2 3 26 26 H 1.09003 * 109.46596 * 60.00064 * 1 2 3 27 27 H 1.09006 * 109.47062 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46792 * 240.00118 * 2 1 3 29 29 H 1.08997 * 109.47199 * 120.00595 * 2 1 3 30 30 H 1.09005 * 109.47035 * 59.99889 * 3 2 1 31 31 H 1.08998 * 109.47083 * 300.00169 * 3 2 1 32 32 H 1.08997 * 109.46989 * 64.33834 * 6 4 3 33 33 H 1.09000 * 109.47013 * 184.33886 * 6 4 3 34 34 H 1.09007 * 109.46875 * 304.33938 * 6 4 3 35 35 H 1.09003 * 109.87856 * 59.50090 * 10 9 7 36 36 H 1.08998 * 109.88187 * 298.32865 * 10 9 7 37 37 H 1.09005 * 110.72085 * 219.44311 * 11 10 9 38 38 H 1.09001 * 110.87088 * 96.24593 * 11 10 9 39 39 H 1.08996 * 109.46852 * 309.58600 * 14 12 11 40 40 H 1.08998 * 109.47632 * 189.58001 * 14 12 11 41 41 H 0.97002 * 120.00183 * 359.97438 * 15 14 12 42 42 H 0.97007 * 119.99890 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.35247 * 85.31031 * 24 9 7 44 44 H 1.09007 * 110.40542 * 322.97549 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8327 -1.3064 7 6 4.0723 2.8579 0.1246 8 8 3.3837 3.7811 -0.2554 9 7 5.2868 3.0978 0.6574 10 6 6.1743 2.0897 1.2557 11 6 7.4586 2.8184 1.7040 12 6 7.4592 4.0955 0.8230 13 1 7.8728 3.8891 -0.1641 14 6 8.2208 5.2330 1.5065 15 7 9.6510 4.9166 1.5325 16 6 10.5361 5.7941 2.0996 17 1 10.1799 6.7197 2.5273 18 6 11.8912 5.4940 2.1247 19 7 12.7420 6.3377 2.6693 20 14 12.5072 3.8929 1.3857 21 1 12.5070 2.8345 2.4274 22 1 11.6162 3.4881 0.2687 23 1 13.8879 4.0830 0.8734 24 6 5.9459 4.4146 0.7354 25 1 -0.3633 0.5137 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7825 1.4646 -2.1430 33 1 5.1678 0.7619 -1.2740 34 1 3.6552 -0.1629 -1.4334 35 1 6.4196 1.3267 0.5170 36 1 5.6879 1.6321 2.1171 37 1 8.3390 2.2089 1.5001 38 1 7.4083 3.0791 2.7612 39 1 7.8564 5.3525 2.5268 40 1 8.0636 6.1592 0.9537 41 1 9.9708 4.0851 1.1487 42 1 13.6890 6.1279 2.6872 43 1 5.6188 4.9500 1.6267 44 1 5.7327 4.9999 -0.1592 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567118528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:05 Heat of formation + Delta-G solvation = -67.183760 kcal Electronic energy + Delta-G solvation = -20701.833696 eV Core-core repulsion = 17652.623893 eV Total energy + Delta-G solvation = -3049.209803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33572 -39.12298 -36.89564 -36.57949 -34.07849 -32.99589 -31.93995 -30.38286 -27.58784 -27.50923 -25.21407 -23.81702 -23.56119 -21.71097 -21.46537 -19.88812 -19.61596 -18.15985 -17.41531 -16.70408 -16.48807 -16.26463 -15.68883 -15.37396 -14.94344 -14.89158 -14.80671 -14.30537 -14.17734 -14.01503 -13.80480 -13.40178 -13.28107 -13.11969 -13.00710 -12.81301 -12.73685 -12.24336 -12.16486 -12.05192 -11.88250 -11.80431 -11.79313 -11.66109 -11.62279 -11.41477 -10.96805 -10.73864 -9.69405 -9.30421 -8.01974 -5.36555 1.39058 1.44251 1.51552 1.56804 1.94061 2.50107 3.27291 3.29784 3.55483 3.61326 3.77586 3.84110 3.97624 4.08598 4.27537 4.30762 4.34182 4.36356 4.38904 4.49871 4.60121 4.62863 4.76664 4.78829 4.80983 4.87419 4.90404 4.99763 5.02143 5.06357 5.10997 5.18109 5.20679 5.23964 5.32634 5.38818 5.43470 5.50999 5.75649 6.21265 6.50412 7.08235 7.10306 7.82688 8.04141 9.19592 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042997 B = 0.003277 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.049346 B = 8542.589978 C = 8891.641017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.099 4.099 5 H 0.115 0.885 6 C -0.139 4.139 7 C 0.524 3.476 8 O -0.590 6.590 9 N -0.618 5.618 10 C 0.102 3.898 11 C -0.123 4.123 12 C -0.099 4.099 13 H 0.086 0.914 14 C 0.167 3.833 15 N -0.753 5.753 16 C -0.238 4.238 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.960 3.040 21 H -0.272 1.272 22 H -0.248 1.248 23 H -0.299 1.299 24 C 0.116 3.884 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.020 0.980 41 H 0.369 0.631 42 H 0.258 0.742 43 H 0.067 0.933 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.304 -19.310 -6.102 29.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.120 4.120 5 H 0.133 0.867 6 C -0.196 4.196 7 C 0.315 3.685 8 O -0.471 6.471 9 N -0.351 5.351 10 C -0.019 4.019 11 C -0.161 4.161 12 C -0.119 4.119 13 H 0.104 0.896 14 C 0.040 3.960 15 N -0.399 5.399 16 C -0.369 4.369 17 H 0.071 0.929 18 C -0.259 4.259 19 N -0.636 5.636 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.172 1.172 23 H -0.226 1.226 24 C -0.007 4.007 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.202 0.798 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.705 -18.656 -6.223 29.289 hybrid contribution 0.907 0.213 -0.139 0.942 sum -20.797 -18.443 -6.361 28.515 Atomic orbital electron populations 1.21787 0.95749 1.02142 1.01570 1.21575 0.96016 0.94853 1.03229 1.21434 0.92304 0.98203 1.01880 1.21362 0.97514 0.90762 1.02371 0.86745 1.21780 1.01812 1.01908 0.94123 1.21153 0.79220 0.92588 0.75584 1.90669 1.56813 1.48063 1.51549 1.48693 1.17361 1.10046 1.59018 1.22284 0.89643 0.91030 0.98961 1.22692 0.97681 0.95592 1.00140 1.22398 0.93392 0.95903 1.00192 0.89580 1.20621 0.82441 0.95405 0.97510 1.42583 1.03154 1.22344 1.71842 1.19017 0.88643 0.99897 1.29295 0.92936 1.25596 0.95963 1.02354 1.01937 1.69906 1.02542 1.39033 1.52134 0.85334 0.77262 0.79567 0.79174 1.19784 1.17211 1.22584 1.22063 0.91094 0.85815 1.01768 0.93181 0.93184 0.91564 0.90499 0.90777 0.93045 0.92742 0.93620 0.91476 0.88676 0.88939 0.89083 0.89069 0.90429 0.95213 0.96147 0.79763 0.93317 0.91449 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.29 5.69 30.60 0.17 -1.12 16 3 C -0.10 -1.66 4.14 30.59 0.13 -1.53 16 4 C -0.10 -1.59 2.29 -11.54 -0.03 -1.61 16 5 H 0.11 1.29 7.28 -2.38 -0.02 1.27 16 6 C -0.14 -1.81 9.03 71.98 0.65 -1.16 16 7 C 0.52 13.10 6.94 87.66 0.61 13.70 16 8 O -0.59 -20.08 16.51 -3.03 -0.05 -20.13 16 9 N -0.62 -14.26 3.33 -811.69 -2.70 -16.96 16 10 C 0.10 1.70 6.08 86.73 0.53 2.23 16 11 C -0.12 -2.68 6.28 31.78 0.20 -2.48 16 12 C -0.10 -2.70 3.07 -9.40 -0.03 -2.73 16 13 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.17 6.09 5.70 86.38 0.49 6.59 16 15 N -0.75 -33.95 5.30 -343.44 -1.82 -35.77 16 16 C -0.24 -13.48 10.47 84.03 0.88 -12.60 16 17 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 19 N -0.99 -63.10 13.97 21.65 0.30 -62.80 16 20 Si 0.96 44.03 27.74 68.60 1.90 45.93 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.25 -10.03 6.52 99.48 0.65 -9.38 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 C 0.12 3.09 6.36 86.85 0.55 3.64 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 28 H 0.08 0.67 6.48 -2.39 -0.02 0.66 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.05 1.10 8.03 -2.39 -0.02 1.08 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.80 7.60 -2.39 -0.02 0.78 16 34 H 0.09 0.80 6.37 -2.38 -0.02 0.78 16 35 H 0.09 1.14 7.60 -2.39 -0.02 1.13 16 36 H 0.09 1.16 8.01 -2.39 -0.02 1.14 16 37 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.08 1.80 7.96 -2.39 -0.02 1.78 16 39 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.37 15.41 5.49 -92.71 -0.51 14.90 16 42 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 43 H 0.07 1.83 8.04 -2.39 -0.02 1.81 16 44 H 0.06 1.89 8.09 -2.38 -0.02 1.87 16 Total: -1.00 -73.13 347.68 3.36 -69.77 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.38 Total: 21.49 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 5.34 Total: -1.53 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.22 Total: -115.53 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -73.13 3.36 -69.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567118528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.590 kcal (2) G-P(sol) polarization free energy of solvation -73.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds