Wall clock time and date at job start Mon Mar 30 2020 00:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 C 1.53005 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.56019 * 29.31149 * 4 3 2 6 6 C 1.52997 * 117.49748 * 243.61996 * 4 3 2 7 7 C 1.52995 * 60.00057 * 252.51478 * 6 4 3 8 8 H 1.09000 * 117.50079 * 107.51439 * 7 6 4 9 9 C 1.50696 * 117.49954 * 252.51285 * 7 6 4 10 10 O 1.21278 * 120.00115 * 68.60710 * 9 7 6 11 11 N 1.34786 * 120.00179 * 248.61003 * 9 7 6 12 12 C 1.46496 * 119.99884 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46653 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46991 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.46884 * 305.00622 * 14 13 12 16 16 C 1.52997 * 109.47127 * 184.99870 * 14 13 12 17 17 N 1.46497 * 109.46631 * 65.00087 * 14 13 12 18 18 C 1.36945 * 119.99649 * 204.99948 * 17 14 13 19 19 H 1.07997 * 120.00244 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99544 * 180.02562 * 18 17 14 21 21 N 1.31613 * 120.00617 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99539 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47409 * 59.99747 * 22 20 18 24 24 H 1.48508 * 109.46880 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47283 * 299.99411 * 22 20 18 26 26 H 1.08997 * 109.46866 * 59.99834 * 1 2 3 27 27 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46709 * 300.00073 * 1 2 3 29 29 H 1.08996 * 109.47106 * 239.99807 * 2 1 3 30 30 H 1.09004 * 109.47011 * 119.99822 * 2 1 3 31 31 H 1.08992 * 109.46810 * 60.00155 * 3 2 1 32 32 H 1.08997 * 109.47328 * 299.99883 * 3 2 1 33 33 H 1.08999 * 117.49827 * 145.02000 * 6 4 3 34 34 H 1.09003 * 117.51632 * 359.97438 * 6 4 3 35 35 H 0.97002 * 119.99650 * 359.97438 * 11 9 7 36 36 H 1.08996 * 109.47408 * 60.00184 * 12 11 9 37 37 H 1.09006 * 109.47093 * 299.99401 * 12 11 9 38 38 H 1.08996 * 109.46933 * 60.00052 * 13 12 11 39 39 H 1.09000 * 109.47335 * 299.99924 * 13 12 11 40 40 H 1.09002 * 109.47153 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.46832 * 60.00321 * 16 14 13 42 42 H 1.09004 * 109.47261 * 300.00303 * 16 14 13 43 43 H 0.96996 * 120.00792 * 25.00239 * 17 14 13 44 44 H 0.97006 * 120.00607 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0406 0.5849 -0.4804 6 6 4.2761 2.0456 1.2167 7 6 4.2766 2.7944 -0.1175 8 1 3.6517 3.6840 -0.1956 9 6 5.5697 2.8385 -0.8901 10 8 6.0125 1.8260 -1.3896 11 7 6.2342 4.0033 -1.0260 12 6 7.4909 4.0462 -1.7776 13 6 8.0347 5.4763 -1.7804 14 6 9.3477 5.5212 -2.5648 15 1 10.0438 4.7922 -2.1500 16 6 9.9550 6.9218 -2.4631 17 7 9.0874 5.2027 -3.9709 18 6 10.0858 4.6836 -4.7514 19 1 11.0650 4.5094 -4.3306 20 6 9.8393 4.3823 -6.0838 21 7 8.6461 4.5950 -6.5969 22 14 11.2009 3.6736 -7.1484 23 1 11.6632 2.3868 -6.5691 24 1 10.6854 3.4410 -8.5215 25 1 12.3365 4.6291 -7.2008 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9564 -0.8900 33 1 5.2110 1.5848 1.5357 34 1 3.6507 2.4429 2.0162 35 1 5.8798 4.8132 -0.6268 36 1 7.3121 3.7239 -2.8034 37 1 8.2172 3.3818 -1.3093 38 1 8.2135 5.7990 -0.7548 39 1 7.3083 6.1404 -2.2489 40 1 10.8901 6.9538 -3.0223 41 1 10.1486 7.1587 -1.4169 42 1 9.2588 7.6507 -2.8779 43 1 8.2081 5.3595 -4.3491 44 1 8.4738 4.3842 -7.5280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567228801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:06 Heat of formation + Delta-G solvation = -33.159455 kcal Electronic energy + Delta-G solvation = -20010.124772 eV Core-core repulsion = 16962.390374 eV Total energy + Delta-G solvation = -3047.734398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.89571 -37.48833 -36.40449 -34.29264 -34.03943 -32.21309 -29.40788 -28.24684 -27.56466 -24.60447 -23.57772 -22.30393 -21.91141 -20.73638 -20.26116 -19.45345 -17.37656 -17.00917 -15.74893 -15.43957 -15.37677 -14.84438 -14.54521 -14.19341 -13.88052 -13.52478 -13.43467 -12.97164 -12.92836 -12.47369 -12.38331 -12.21814 -12.02190 -11.54068 -11.52203 -11.26252 -11.06321 -11.04979 -10.88464 -10.71072 -10.62194 -10.37996 -10.27471 -10.14713 -9.99380 -9.61865 -9.54740 -8.88578 -8.74833 -6.92242 -5.71901 -3.00628 2.64354 3.30468 3.47939 3.52414 3.53156 3.73843 4.41874 4.60415 4.63657 4.67656 4.85492 4.92881 5.04957 5.10335 5.29158 5.33262 5.42652 5.48704 5.51567 5.56913 5.59415 5.62940 5.71899 5.79372 5.82310 5.90747 5.99582 6.03029 6.09730 6.20037 6.21618 6.37643 6.42319 6.52169 6.71985 6.75728 6.88845 7.08455 7.72162 7.74329 8.45118 8.46488 9.57675 10.14501 10.49061 11.50727 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.003223 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.592653 B = 8684.554360 C = 9611.908641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.150 4.150 7 C -0.189 4.189 8 H 0.121 0.879 9 C 0.536 3.464 10 O -0.538 6.538 11 N -0.725 5.725 12 C 0.122 3.878 13 C -0.132 4.132 14 C 0.174 3.826 15 H 0.049 0.951 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.396 0.604 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.035 0.965 42 H 0.045 0.955 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.554 -2.020 17.794 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.127 4.127 4 C -0.137 4.137 5 H 0.136 0.864 6 C -0.188 4.188 7 C -0.210 4.210 8 H 0.139 0.861 9 C 0.322 3.678 10 O -0.415 6.415 11 N -0.376 5.376 12 C -0.001 4.001 13 C -0.170 4.170 14 C 0.063 3.937 15 H 0.067 0.933 16 C -0.223 4.223 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.214 1.214 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.230 0.770 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.059 -2.832 17.327 21.881 hybrid contribution 0.361 0.300 -0.674 0.821 sum -12.698 -2.532 16.653 21.095 Atomic orbital electron populations 1.21781 0.95926 1.01604 1.01735 1.21507 0.95590 0.96546 1.02411 1.21242 0.91977 0.97361 1.02140 1.22447 0.94602 0.95705 1.00969 0.86388 1.23082 1.03074 1.02333 0.90289 1.22318 0.98032 0.98761 1.01898 0.86095 1.19621 0.84622 0.83489 0.80089 1.90723 1.68491 1.34044 1.48280 1.46047 1.25327 1.10424 1.55757 1.21457 0.83674 0.97539 0.97443 1.22054 0.99361 0.95387 1.00227 1.20156 0.92796 0.94307 0.86398 0.93322 1.22425 1.01553 0.99528 0.98829 1.42444 1.12910 1.76161 1.05018 1.19179 0.92150 1.33942 0.91671 0.91272 1.24725 0.96732 1.02266 0.97173 1.69642 1.20333 1.54295 1.13880 0.86291 0.81212 0.79008 0.79818 1.21259 1.21751 1.21361 0.92693 0.92776 0.92874 0.91675 0.91859 0.91740 0.91328 0.88375 0.87995 0.77044 0.89767 0.91942 0.91970 0.91627 0.92728 0.94587 0.93537 0.78297 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.96 5.89 -26.73 -0.16 -1.12 16 3 C -0.09 -0.74 5.50 -26.73 -0.15 -0.89 16 4 C -0.12 -1.24 5.25 -90.62 -0.48 -1.71 16 5 H 0.12 1.50 7.60 -51.93 -0.39 1.10 16 6 C -0.15 -1.38 9.88 -26.74 -0.26 -1.64 16 7 C -0.19 -2.07 5.91 -91.78 -0.54 -2.61 16 8 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.54 8.25 7.61 -10.98 -0.08 8.17 16 10 O -0.54 -10.86 16.26 5.56 0.09 -10.77 16 11 N -0.73 -10.13 5.56 -60.29 -0.33 -10.47 16 12 C 0.12 2.08 5.56 -4.04 -0.02 2.06 16 13 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 14 C 0.17 3.38 2.89 -67.93 -0.20 3.18 16 15 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 16 C -0.16 -2.88 9.49 37.16 0.35 -2.52 16 17 N -0.72 -17.96 4.57 -53.43 -0.24 -18.20 16 18 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 22 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.70 8.03 -51.93 -0.42 0.28 16 35 H 0.40 4.15 8.47 -40.82 -0.35 3.80 16 36 H 0.08 1.80 7.75 -51.93 -0.40 1.40 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -32.80 364.25 -9.01 -41.81 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.17 Total: 9.38 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.54 Total: -7.20 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.15 Total: -56.56 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.80 -9.01 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567228801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.650 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds