Wall clock time and date at job start Mon Mar 30 2020 00:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47237 * 2 1 4 4 C 1.53005 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.08998 * 115.56019 * 29.31149 * 4 3 2 6 6 C 1.52997 * 117.49748 * 243.61996 * 4 3 2 7 7 C 1.52995 * 60.00057 * 252.51478 * 6 4 3 8 8 H 1.09000 * 117.50079 * 107.51439 * 7 6 4 9 9 C 1.50696 * 117.49954 * 252.51285 * 7 6 4 10 10 O 1.21278 * 120.00115 * 68.60710 * 9 7 6 11 11 N 1.34786 * 120.00179 * 248.61003 * 9 7 6 12 12 C 1.46496 * 119.99884 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46653 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46991 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.46884 * 305.00622 * 14 13 12 16 16 C 1.52997 * 109.47127 * 184.99870 * 14 13 12 17 17 N 1.46497 * 109.46631 * 65.00087 * 14 13 12 18 18 C 1.36945 * 119.99649 * 204.99948 * 17 14 13 19 19 H 1.07997 * 120.00244 * 359.97438 * 18 17 14 20 20 C 1.38812 * 119.99544 * 180.02562 * 18 17 14 21 21 N 1.31613 * 120.00617 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99539 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47409 * 59.99747 * 22 20 18 24 24 H 1.48508 * 109.46880 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47283 * 299.99411 * 22 20 18 26 26 H 1.08997 * 109.46866 * 59.99834 * 1 2 3 27 27 H 1.08996 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46709 * 300.00073 * 1 2 3 29 29 H 1.08996 * 109.47106 * 239.99807 * 2 1 3 30 30 H 1.09004 * 109.47011 * 119.99822 * 2 1 3 31 31 H 1.08992 * 109.46810 * 60.00155 * 3 2 1 32 32 H 1.08997 * 109.47328 * 299.99883 * 3 2 1 33 33 H 1.08999 * 117.49827 * 145.02000 * 6 4 3 34 34 H 1.09003 * 117.51632 * 359.97438 * 6 4 3 35 35 H 0.97002 * 119.99650 * 359.97438 * 11 9 7 36 36 H 1.08996 * 109.47408 * 60.00184 * 12 11 9 37 37 H 1.09006 * 109.47093 * 299.99401 * 12 11 9 38 38 H 1.08996 * 109.46933 * 60.00052 * 13 12 11 39 39 H 1.09000 * 109.47335 * 299.99924 * 13 12 11 40 40 H 1.09002 * 109.47153 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.46832 * 60.00321 * 16 14 13 42 42 H 1.09004 * 109.47261 * 300.00303 * 16 14 13 43 43 H 0.96996 * 120.00792 * 25.00239 * 17 14 13 44 44 H 0.97006 * 120.00607 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0406 0.5849 -0.4804 6 6 4.2761 2.0456 1.2167 7 6 4.2766 2.7944 -0.1175 8 1 3.6517 3.6840 -0.1956 9 6 5.5697 2.8385 -0.8901 10 8 6.0125 1.8260 -1.3896 11 7 6.2342 4.0033 -1.0260 12 6 7.4909 4.0462 -1.7776 13 6 8.0347 5.4763 -1.7804 14 6 9.3477 5.5212 -2.5648 15 1 10.0438 4.7922 -2.1500 16 6 9.9550 6.9218 -2.4631 17 7 9.0874 5.2027 -3.9709 18 6 10.0858 4.6836 -4.7514 19 1 11.0650 4.5094 -4.3306 20 6 9.8393 4.3823 -6.0838 21 7 8.6461 4.5950 -6.5969 22 14 11.2009 3.6736 -7.1484 23 1 11.6632 2.3868 -6.5691 24 1 10.6854 3.4410 -8.5215 25 1 12.3365 4.6291 -7.2008 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6768 1.9564 -0.8900 33 1 5.2110 1.5848 1.5357 34 1 3.6507 2.4429 2.0162 35 1 5.8798 4.8132 -0.6268 36 1 7.3121 3.7239 -2.8034 37 1 8.2172 3.3818 -1.3093 38 1 8.2135 5.7990 -0.7548 39 1 7.3083 6.1404 -2.2489 40 1 10.8901 6.9538 -3.0223 41 1 10.1486 7.1587 -1.4169 42 1 9.2588 7.6507 -2.8779 43 1 8.2081 5.3595 -4.3491 44 1 8.4738 4.3842 -7.5280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567228801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:05 Heat of formation + Delta-G solvation = -54.508738 kcal Electronic energy + Delta-G solvation = -20011.050547 eV Core-core repulsion = 16962.390374 eV Total energy + Delta-G solvation = -3048.660172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05881 -38.56629 -37.84635 -35.82135 -34.72974 -34.12545 -31.13654 -29.76428 -28.29541 -26.04389 -25.30285 -23.40090 -22.75748 -21.77060 -21.40440 -20.77658 -19.28758 -18.25221 -17.06776 -16.88270 -16.36955 -16.10108 -15.79874 -15.41980 -15.37438 -15.15653 -14.47587 -14.19440 -14.13039 -13.74242 -13.56455 -13.25775 -13.12144 -12.92058 -12.80100 -12.63881 -12.33462 -12.25981 -12.20243 -12.14262 -11.93500 -11.67780 -11.65190 -11.60726 -11.18249 -11.00696 -10.94991 -10.73559 -10.10267 -8.98834 -7.93477 -5.20400 1.44573 1.47992 1.49001 1.53383 2.16246 2.56284 2.86287 3.40458 3.62071 3.75374 3.87697 3.90890 3.99687 4.15910 4.20455 4.26373 4.31103 4.35373 4.40590 4.64877 4.65539 4.75572 4.83309 4.88160 4.89885 4.94911 5.00091 5.02370 5.08854 5.10428 5.20725 5.22695 5.37110 5.38938 5.41353 5.46349 5.52692 5.52868 5.61187 6.29461 6.59124 7.28759 7.35231 8.13429 8.34564 9.29992 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021086 B = 0.003223 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.592653 B = 8684.554360 C = 9611.908641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.082 4.082 4 C -0.129 4.129 5 H 0.085 0.915 6 C -0.127 4.127 7 C -0.192 4.192 8 H 0.153 0.847 9 C 0.527 3.473 10 O -0.598 6.598 11 N -0.709 5.709 12 C 0.132 3.868 13 C -0.114 4.114 14 C 0.163 3.837 15 H 0.041 0.959 16 C -0.152 4.152 17 N -0.735 5.735 18 C -0.235 4.235 19 H 0.074 0.926 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.275 1.275 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.418 0.582 36 H 0.033 0.967 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.371 0.629 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 -0.613 20.485 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.148 4.148 5 H 0.103 0.897 6 C -0.165 4.165 7 C -0.213 4.213 8 H 0.171 0.829 9 C 0.315 3.685 10 O -0.479 6.479 11 N -0.361 5.361 12 C 0.008 3.992 13 C -0.152 4.152 14 C 0.054 3.946 15 H 0.059 0.941 16 C -0.212 4.212 17 N -0.376 5.376 18 C -0.367 4.367 19 H 0.092 0.908 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.797 3.203 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.201 1.201 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.157 0.843 35 H 0.255 0.745 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.203 0.797 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.780 -1.371 20.090 24.401 hybrid contribution 0.615 -0.158 -1.413 1.549 sum -13.165 -1.529 18.678 22.902 Atomic orbital electron populations 1.21763 0.94837 1.01995 1.02215 1.21512 0.96512 0.96412 1.01801 1.21221 0.90005 0.97633 1.03075 1.22452 0.96053 0.94330 1.01968 0.89704 1.23202 1.02719 1.00439 0.90106 1.22344 0.95934 1.00311 1.02679 0.82893 1.20513 0.85772 0.82724 0.79481 1.90698 1.70257 1.36124 1.50792 1.45851 1.24125 1.11255 1.54837 1.21095 0.84854 0.98418 0.94841 1.21904 0.97193 0.94098 1.02023 1.20474 0.94974 0.95205 0.83928 0.94076 1.22255 1.00123 0.97700 1.01142 1.42648 1.11720 1.76151 1.07094 1.19572 0.92842 1.32197 0.92057 0.90833 1.25510 0.98906 1.03940 0.98754 1.69801 1.22273 1.56422 1.13692 0.85292 0.78857 0.78449 0.77689 1.20889 1.22343 1.20146 0.92877 0.92512 0.91681 0.93382 0.91517 0.89352 0.91683 0.89579 0.84339 0.74478 0.94895 0.93379 0.87571 0.90922 0.94876 0.90507 0.93581 0.79688 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.84 5.89 30.60 0.18 -1.66 16 3 C -0.08 -1.19 5.50 30.60 0.17 -1.03 16 4 C -0.13 -2.59 5.25 -10.79 -0.06 -2.65 16 5 H 0.08 2.29 7.60 -2.39 -0.02 2.27 16 6 C -0.13 -2.02 9.88 30.59 0.30 -1.72 16 7 C -0.19 -3.86 5.91 -11.54 -0.07 -3.92 16 8 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 9 C 0.53 16.25 7.61 87.65 0.67 16.92 16 10 O -0.60 -25.38 16.26 -3.02 -0.05 -25.43 16 11 N -0.71 -19.13 5.56 -463.05 -2.57 -21.70 16 12 C 0.13 4.57 5.56 86.38 0.48 5.05 16 13 C -0.11 -3.31 4.87 30.60 0.15 -3.16 16 14 C 0.16 6.15 2.89 44.99 0.13 6.28 16 15 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 16 C -0.15 -5.02 9.49 71.98 0.68 -4.34 16 17 N -0.74 -37.09 4.57 -322.94 -1.48 -38.57 16 18 C -0.23 -13.29 9.93 84.03 0.83 -12.46 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 21 N -0.97 -61.35 13.06 21.65 0.28 -61.06 16 22 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 31 H 0.09 0.89 7.87 -2.39 -0.02 0.87 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.14 1.23 8.03 -2.39 -0.02 1.21 16 35 H 0.42 7.57 8.47 -92.71 -0.79 6.78 16 36 H 0.03 1.48 7.75 -2.39 -0.02 1.46 16 37 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.37 20.26 7.80 -92.71 -0.72 19.54 16 44 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -75.36 364.25 2.31 -73.04 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.55 Total: 31.78 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.65 Total: -7.99 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -3.77 Total: -121.33 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -75.36 2.31 -73.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567228801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.532 kcal (2) G-P(sol) polarization free energy of solvation -75.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds