Wall clock time and date at job start Mon Mar 30 2020 00:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46781 * 2 1 4 4 C 1.53006 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47021 * 304.99928 * 4 3 2 6 6 C 1.53001 * 109.47065 * 64.99729 * 4 3 2 7 7 C 1.50693 * 109.47026 * 184.99937 * 4 3 2 8 8 O 1.21274 * 120.00271 * 349.69737 * 7 4 3 9 9 N 1.34787 * 119.99800 * 169.69941 * 7 4 3 10 10 C 1.46498 * 119.99814 * 185.21098 * 9 7 4 11 11 C 1.46494 * 119.99978 * 5.21558 * 9 7 4 12 12 H 1.09000 * 110.88946 * 2.49125 * 11 9 7 13 13 C 1.55157 * 111.00664 * 126.37344 * 11 9 7 14 14 C 1.54325 * 102.94137 * 82.60911 * 13 11 9 15 15 N 1.47023 * 107.26933 * 22.19587 * 14 13 11 16 16 C 1.36943 * 125.64503 * 181.02540 * 15 14 13 17 17 H 1.08005 * 119.99324 * 171.23367 * 16 15 14 18 18 C 1.38805 * 120.00308 * 351.23291 * 16 15 14 19 19 N 1.31617 * 120.00272 * 167.87943 * 18 16 15 20 20 Si 1.86803 * 119.99761 * 347.87884 * 18 16 15 21 21 H 1.48505 * 109.47045 * 185.56036 * 20 18 16 22 22 H 1.48498 * 109.47085 * 305.55820 * 20 18 16 23 23 H 1.48498 * 109.47364 * 65.56133 * 20 18 16 24 24 C 1.47422 * 108.70855 * 1.28410 * 15 14 13 25 25 H 1.08999 * 109.47455 * 300.00286 * 1 2 3 26 26 H 1.09007 * 109.46969 * 60.00139 * 1 2 3 27 27 H 1.09002 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47455 * 239.99714 * 2 1 3 29 29 H 1.08996 * 109.47024 * 119.99380 * 2 1 3 30 30 H 1.08998 * 109.47464 * 60.00434 * 3 2 1 31 31 H 1.08997 * 109.47530 * 299.99219 * 3 2 1 32 32 H 1.09000 * 109.47378 * 177.34148 * 6 4 3 33 33 H 1.08996 * 109.47098 * 297.34685 * 6 4 3 34 34 H 1.09004 * 109.46931 * 57.34294 * 6 4 3 35 35 H 1.08998 * 109.47519 * 268.13524 * 10 9 7 36 36 H 1.08999 * 109.47046 * 28.13997 * 10 9 7 37 37 H 1.09007 * 109.46824 * 148.12971 * 10 9 7 38 38 H 1.08995 * 110.71648 * 324.24753 * 13 11 9 39 39 H 1.08997 * 110.71813 * 200.97244 * 13 11 9 40 40 H 1.08996 * 109.88124 * 262.77907 * 14 13 11 41 41 H 1.08997 * 110.01205 * 141.67980 * 14 13 11 42 42 H 0.96996 * 119.99804 * 354.89415 * 19 18 16 43 43 H 1.08996 * 110.36481 * 94.48088 * 24 15 14 44 44 H 1.08992 * 110.37159 * 216.80968 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0722 2.8580 0.1245 8 8 3.3001 3.7870 0.0167 9 7 5.3795 3.0914 0.3549 10 6 5.8492 4.4592 0.5888 11 6 6.3307 1.9774 0.3714 12 1 5.8318 1.0368 0.1380 13 6 7.5096 2.2382 -0.6031 14 6 8.4541 3.1316 0.2284 15 7 8.1378 2.9010 1.6456 16 6 8.7403 3.5194 2.7086 17 1 8.3436 3.3891 3.7047 18 6 9.8605 4.3135 2.5060 19 7 10.2975 5.0938 3.4716 20 14 10.7480 4.2746 0.8627 21 1 11.9789 5.1012 0.9452 22 1 11.1135 2.8742 0.5305 23 1 9.8571 4.8176 -0.1941 24 6 7.0690 1.8894 1.7330 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1695 0.8757 -1.3265 33 1 3.7566 -0.2059 -1.3736 34 1 3.6791 1.3938 -2.1503 35 1 6.1535 4.9058 -0.3577 36 1 5.0446 5.0496 1.0272 37 1 6.6989 4.4398 1.2713 38 1 7.1650 2.7647 -1.4930 39 1 8.0010 1.3034 -0.8727 40 1 8.2895 4.1794 -0.0224 41 1 9.4918 2.8620 0.0317 42 1 9.7955 5.1703 4.2980 43 1 7.4969 0.8966 1.8716 44 1 6.3874 2.1271 2.5496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567906952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:34 Heat of formation + Delta-G solvation = -6.639352 kcal Electronic energy + Delta-G solvation = -22027.899618 eV Core-core repulsion = 18981.315218 eV Total energy + Delta-G solvation = -3046.584400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30005 -38.07763 -36.04177 -34.38784 -32.25366 -32.14481 -29.66335 -28.63883 -26.88544 -26.50420 -24.09905 -23.19751 -21.46319 -20.93594 -20.41144 -18.48215 -17.54972 -17.17799 -15.91267 -15.62066 -15.16566 -14.96897 -14.80213 -14.07341 -13.68978 -13.65988 -13.30901 -13.09681 -12.74330 -12.49036 -12.39814 -12.21835 -11.98176 -11.79944 -11.66598 -11.36235 -11.26683 -11.12980 -11.08045 -11.03967 -10.87797 -10.72469 -10.64164 -9.93245 -9.49162 -9.31687 -9.01996 -8.92995 -8.31268 -7.04632 -6.35510 -3.28884 2.82534 3.26736 3.36334 3.42974 3.66079 4.47486 4.56224 4.62503 4.77977 4.81065 4.94117 5.01951 5.07873 5.15328 5.21944 5.27758 5.37268 5.44371 5.51598 5.63550 5.65482 5.72145 5.74393 5.79207 5.83551 5.95441 5.97316 6.01569 6.07453 6.14733 6.21065 6.23587 6.27013 6.37607 6.41459 6.59838 6.71618 6.84795 7.57122 7.74115 8.27630 8.41251 8.98438 9.48432 10.14386 11.15087 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036020 B = 0.004745 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.162510 B = 5899.821460 C = 6013.625414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.112 4.112 5 H 0.094 0.906 6 C -0.153 4.153 7 C 0.513 3.487 8 O -0.550 6.550 9 N -0.590 5.590 10 C 0.069 3.931 11 C 0.109 3.891 12 H 0.107 0.893 13 C -0.139 4.139 14 C 0.095 3.905 15 N -0.609 5.609 16 C -0.324 4.324 17 H 0.079 0.921 18 C -0.021 4.021 19 N -0.928 5.928 20 Si 1.074 2.926 21 H -0.302 1.302 22 H -0.298 1.298 23 H -0.287 1.287 24 C 0.124 3.876 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.036 0.964 42 H 0.262 0.738 43 H 0.036 0.964 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.587 -11.386 -9.927 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.137 4.137 4 C -0.134 4.134 5 H 0.112 0.888 6 C -0.210 4.210 7 C 0.301 3.699 8 O -0.428 6.428 9 N -0.321 5.321 10 C -0.074 4.074 11 C 0.004 3.996 12 H 0.125 0.875 13 C -0.178 4.178 14 C -0.029 4.029 15 N -0.338 5.338 16 C -0.451 4.451 17 H 0.097 0.903 18 C -0.220 4.220 19 N -0.569 5.569 20 Si 0.909 3.091 21 H -0.231 1.231 22 H -0.227 1.227 23 H -0.214 1.214 24 C -0.003 4.003 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.053 0.947 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.620 -10.227 -10.684 19.442 hybrid contribution -1.142 -0.681 0.885 1.598 sum -13.762 -10.908 -9.799 20.110 Atomic orbital electron populations 1.21761 0.95896 1.01347 1.01936 1.21598 0.95884 0.96785 1.02057 1.21414 0.92407 0.96451 1.03380 1.21338 0.97604 0.93974 1.00445 0.88783 1.22022 1.01898 1.01144 0.95913 1.20644 0.81779 0.91280 0.76153 1.90651 1.55389 1.45926 1.50834 1.47722 1.06546 1.08513 1.69333 1.22061 1.02202 0.81222 1.01867 1.22664 0.89878 0.89413 0.97639 0.87539 1.22934 0.96126 1.00789 0.97953 1.22209 0.96828 0.98344 0.85523 1.44896 1.42392 1.45614 1.00853 1.20163 1.11145 1.26467 0.87292 0.90303 1.25816 0.95670 0.95562 1.04973 1.70882 1.41677 1.37381 1.06994 0.83798 0.75722 0.74598 0.74990 1.23080 1.22694 1.21423 1.22008 0.90715 0.93151 0.94425 0.92731 0.92765 0.92903 0.91760 0.92007 0.91458 0.91246 0.91253 0.91289 0.92066 0.93787 0.91850 0.86784 0.90837 0.90234 0.93019 0.94706 0.92784 0.94653 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.06 5.69 -26.73 -0.15 -1.21 16 3 C -0.10 -1.09 3.98 -26.73 -0.11 -1.19 16 4 C -0.11 -1.30 1.87 -91.77 -0.17 -1.48 16 5 H 0.09 1.00 7.54 -51.93 -0.39 0.61 16 6 C -0.15 -1.45 8.43 37.16 0.31 -1.13 16 7 C 0.51 8.21 6.96 -10.98 -0.08 8.13 16 8 O -0.55 -10.62 15.64 5.56 0.09 -10.54 16 9 N -0.59 -9.75 2.92 -171.35 -0.50 -10.25 16 10 C 0.07 1.28 8.63 59.85 0.52 1.80 16 11 C 0.11 1.63 2.65 -65.66 -0.17 1.45 16 12 H 0.11 1.25 4.25 -51.93 -0.22 1.03 16 13 C -0.14 -2.13 6.30 -24.90 -0.16 -2.28 16 14 C 0.10 1.94 3.56 -3.06 -0.01 1.93 16 15 N -0.61 -13.89 1.88 -169.94 -0.32 -14.21 16 16 C -0.32 -8.86 10.26 -15.06 -0.15 -9.02 16 17 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 18 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 19 N -0.93 -28.66 13.70 55.49 0.76 -27.90 16 20 Si 1.07 26.21 24.50 -169.99 -4.16 22.04 16 21 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.30 -6.96 6.57 56.52 0.37 -6.59 16 23 H -0.29 -6.39 5.45 56.52 0.31 -6.08 16 24 C 0.12 2.28 6.61 -2.41 -0.02 2.27 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.49 6.62 -51.93 -0.34 0.14 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 32 H 0.07 0.66 5.40 -51.93 -0.28 0.38 16 33 H 0.07 0.51 6.69 -51.93 -0.35 0.17 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.04 0.78 8.00 -51.93 -0.42 0.37 16 36 H 0.06 1.20 7.44 -51.93 -0.39 0.82 16 37 H 0.11 2.45 4.73 -51.93 -0.25 2.20 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 1.12 5.10 -51.93 -0.26 0.85 16 41 H 0.04 0.76 3.86 -51.93 -0.20 0.56 16 42 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -31.84 324.05 -6.61 -38.46 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.44 Total: -0.22 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 0.08 Total: -2.26 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.06 Total: -52.37 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.16 Total: 22.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.84 -6.61 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567906952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.819 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds