Wall clock time and date at job start Mon Mar 30 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46781 * 2 1 4 4 C 1.53006 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47021 * 304.99928 * 4 3 2 6 6 C 1.53001 * 109.47065 * 64.99729 * 4 3 2 7 7 C 1.50693 * 109.47026 * 184.99937 * 4 3 2 8 8 O 1.21274 * 120.00271 * 349.69737 * 7 4 3 9 9 N 1.34787 * 119.99800 * 169.69941 * 7 4 3 10 10 C 1.46498 * 119.99814 * 185.21098 * 9 7 4 11 11 C 1.46494 * 119.99978 * 5.21558 * 9 7 4 12 12 H 1.09000 * 110.88946 * 2.49125 * 11 9 7 13 13 C 1.55157 * 111.00664 * 126.37344 * 11 9 7 14 14 C 1.54325 * 102.94137 * 82.60911 * 13 11 9 15 15 N 1.47023 * 107.26933 * 22.19587 * 14 13 11 16 16 C 1.36943 * 125.64503 * 181.02540 * 15 14 13 17 17 H 1.08005 * 119.99324 * 171.23367 * 16 15 14 18 18 C 1.38805 * 120.00308 * 351.23291 * 16 15 14 19 19 N 1.31617 * 120.00272 * 167.87943 * 18 16 15 20 20 Si 1.86803 * 119.99761 * 347.87884 * 18 16 15 21 21 H 1.48505 * 109.47045 * 185.56036 * 20 18 16 22 22 H 1.48498 * 109.47085 * 305.55820 * 20 18 16 23 23 H 1.48498 * 109.47364 * 65.56133 * 20 18 16 24 24 C 1.47422 * 108.70855 * 1.28410 * 15 14 13 25 25 H 1.08999 * 109.47455 * 300.00286 * 1 2 3 26 26 H 1.09007 * 109.46969 * 60.00139 * 1 2 3 27 27 H 1.09002 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47455 * 239.99714 * 2 1 3 29 29 H 1.08996 * 109.47024 * 119.99380 * 2 1 3 30 30 H 1.08998 * 109.47464 * 60.00434 * 3 2 1 31 31 H 1.08997 * 109.47530 * 299.99219 * 3 2 1 32 32 H 1.09000 * 109.47378 * 177.34148 * 6 4 3 33 33 H 1.08996 * 109.47098 * 297.34685 * 6 4 3 34 34 H 1.09004 * 109.46931 * 57.34294 * 6 4 3 35 35 H 1.08998 * 109.47519 * 268.13524 * 10 9 7 36 36 H 1.08999 * 109.47046 * 28.13997 * 10 9 7 37 37 H 1.09007 * 109.46824 * 148.12971 * 10 9 7 38 38 H 1.08995 * 110.71648 * 324.24753 * 13 11 9 39 39 H 1.08997 * 110.71813 * 200.97244 * 13 11 9 40 40 H 1.08996 * 109.88124 * 262.77907 * 14 13 11 41 41 H 1.08997 * 110.01205 * 141.67980 * 14 13 11 42 42 H 0.96996 * 119.99804 * 354.89415 * 19 18 16 43 43 H 1.08996 * 110.36481 * 94.48088 * 24 15 14 44 44 H 1.08992 * 110.37159 * 216.80968 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0722 2.8580 0.1245 8 8 3.3001 3.7870 0.0167 9 7 5.3795 3.0914 0.3549 10 6 5.8492 4.4592 0.5888 11 6 6.3307 1.9774 0.3714 12 1 5.8318 1.0368 0.1380 13 6 7.5096 2.2382 -0.6031 14 6 8.4541 3.1316 0.2284 15 7 8.1378 2.9010 1.6456 16 6 8.7403 3.5194 2.7086 17 1 8.3436 3.3891 3.7047 18 6 9.8605 4.3135 2.5060 19 7 10.2975 5.0938 3.4716 20 14 10.7480 4.2746 0.8627 21 1 11.9789 5.1012 0.9452 22 1 11.1135 2.8742 0.5305 23 1 9.8571 4.8176 -0.1941 24 6 7.0690 1.8894 1.7330 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.1695 0.8757 -1.3265 33 1 3.7566 -0.2059 -1.3736 34 1 3.6791 1.3938 -2.1503 35 1 6.1535 4.9058 -0.3577 36 1 5.0446 5.0496 1.0272 37 1 6.6989 4.4398 1.2713 38 1 7.1650 2.7647 -1.4930 39 1 8.0010 1.3034 -0.8727 40 1 8.2895 4.1794 -0.0224 41 1 9.4918 2.8620 0.0317 42 1 9.7955 5.1703 4.2980 43 1 7.4969 0.8966 1.8716 44 1 6.3874 2.1271 2.5496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567906952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:33 Heat of formation + Delta-G solvation = -27.159011 kcal Electronic energy + Delta-G solvation = -22028.789417 eV Core-core repulsion = 18981.315218 eV Total energy + Delta-G solvation = -3047.474199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.58238 -39.51321 -36.95224 -35.99592 -34.16737 -32.97348 -31.33053 -30.10568 -28.04750 -27.50214 -25.82930 -24.25384 -22.82046 -22.34552 -21.52498 -19.81907 -19.45345 -18.38597 -17.41003 -16.78526 -16.66148 -16.16312 -16.02497 -15.48304 -14.99179 -14.82889 -14.69701 -14.59477 -13.92338 -13.66779 -13.50161 -13.37123 -13.25832 -13.05405 -13.00402 -12.82471 -12.68007 -12.47782 -12.21884 -12.06988 -11.82426 -11.68949 -11.58479 -11.39289 -11.36078 -11.07022 -10.78592 -10.64475 -9.78948 -8.96151 -8.62697 -5.45544 1.40619 1.50184 1.58336 1.71957 2.00316 2.56467 3.16060 3.28300 3.44168 3.65842 3.76037 3.81875 3.98917 4.09816 4.26785 4.35627 4.37597 4.40219 4.47438 4.50498 4.56739 4.68142 4.72193 4.82786 4.83825 4.91263 4.93507 4.96737 5.00973 5.04518 5.06104 5.14614 5.20369 5.27727 5.33101 5.47334 5.48150 5.54694 5.54788 6.10592 6.46302 6.83500 7.14081 7.45406 8.08752 8.90218 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036020 B = 0.004745 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.162510 B = 5899.821460 C = 6013.625414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.106 4.106 5 H 0.112 0.888 6 C -0.149 4.149 7 C 0.508 3.492 8 O -0.590 6.590 9 N -0.594 5.594 10 C 0.078 3.922 11 C 0.121 3.879 12 H 0.154 0.846 13 C -0.127 4.127 14 C 0.085 3.915 15 N -0.627 5.627 16 C -0.302 4.302 17 H 0.043 0.957 18 C -0.082 4.082 19 N -0.970 5.970 20 Si 1.113 2.887 21 H -0.320 1.320 22 H -0.276 1.276 23 H -0.255 1.255 24 C 0.117 3.883 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.246 0.754 43 H 0.058 0.942 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 -14.763 -12.945 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.134 4.134 4 C -0.127 4.127 5 H 0.130 0.870 6 C -0.206 4.206 7 C 0.299 3.701 8 O -0.471 6.471 9 N -0.325 5.325 10 C -0.065 4.065 11 C 0.017 3.983 12 H 0.171 0.829 13 C -0.165 4.165 14 C -0.039 4.039 15 N -0.355 5.355 16 C -0.431 4.431 17 H 0.061 0.939 18 C -0.274 4.274 19 N -0.615 5.615 20 Si 0.942 3.058 21 H -0.250 1.250 22 H -0.203 1.203 23 H -0.180 1.180 24 C -0.008 4.008 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.552 -13.665 -13.727 23.639 hybrid contribution -1.006 0.372 1.928 2.206 sum -14.558 -13.293 -11.799 22.975 Atomic orbital electron populations 1.21783 0.95788 1.02128 1.01486 1.21572 0.95993 0.94788 1.03297 1.21387 0.92213 0.98098 1.01710 1.21435 0.97762 0.90865 1.02679 0.86974 1.22048 1.02162 1.02528 0.93869 1.21551 0.80953 0.92929 0.74691 1.90635 1.56242 1.47744 1.52449 1.47856 1.07378 1.07907 1.69332 1.21747 1.00412 0.83033 1.01305 1.22810 0.89707 0.90535 0.95217 0.82917 1.22974 0.94676 1.01512 0.97356 1.22331 0.98107 0.98849 0.84623 1.44897 1.43009 1.46564 1.01038 1.19990 1.10270 1.25331 0.87502 0.93876 1.27082 0.97211 0.95620 1.07468 1.70992 1.42778 1.40250 1.07435 0.83361 0.74389 0.75604 0.72439 1.24990 1.20343 1.18048 1.22244 0.89579 0.92760 0.96255 0.93565 0.92972 0.91469 0.89958 0.91163 0.93732 0.92513 0.90540 0.88279 0.92662 0.93056 0.93328 0.89825 0.89010 0.86558 0.94731 0.95029 0.94531 0.92413 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.12 -1.60 5.69 30.59 0.17 -1.42 16 3 C -0.10 -1.91 3.98 30.60 0.12 -1.79 16 4 C -0.11 -2.10 1.87 -11.54 -0.02 -2.12 16 5 H 0.11 1.86 7.54 -2.39 -0.02 1.84 16 6 C -0.15 -2.04 8.43 71.98 0.61 -1.43 16 7 C 0.51 15.33 6.96 87.65 0.61 15.94 16 8 O -0.59 -22.69 15.64 -3.01 -0.05 -22.73 16 9 N -0.59 -18.42 2.92 -814.40 -2.37 -20.80 16 10 C 0.08 2.93 8.63 127.77 1.10 4.03 16 11 C 0.12 3.12 2.65 46.46 0.12 3.24 16 12 H 0.15 2.61 4.25 -2.39 -0.01 2.60 16 13 C -0.13 -3.23 6.30 31.78 0.20 -3.03 16 14 C 0.08 3.22 3.56 86.73 0.31 3.53 16 15 N -0.63 -28.02 1.88 -691.55 -1.30 -29.32 16 16 C -0.30 -17.01 10.26 84.03 0.86 -16.15 16 17 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 18 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 19 N -0.97 -62.62 13.70 21.65 0.30 -62.33 16 20 Si 1.11 52.87 24.50 68.60 1.68 54.55 16 21 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 22 H -0.28 -11.99 6.57 99.48 0.65 -11.33 16 23 H -0.26 -10.71 5.45 99.48 0.54 -10.17 16 24 C 0.12 4.05 6.61 86.94 0.57 4.63 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 28 H 0.08 0.84 6.62 -2.39 -0.02 0.82 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 32 H 0.08 0.95 5.40 -2.39 -0.01 0.94 16 33 H 0.10 0.83 6.69 -2.39 -0.02 0.81 16 34 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.05 1.80 8.00 -2.39 -0.02 1.78 16 36 H 0.05 1.91 7.44 -2.39 -0.02 1.89 16 37 H 0.08 3.66 4.73 -2.38 -0.01 3.65 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.03 1.43 5.10 -2.39 -0.01 1.42 16 41 H 0.03 1.27 3.86 -2.39 -0.01 1.26 16 42 H 0.25 16.01 8.73 -92.71 -0.81 15.20 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -74.40 324.05 4.81 -69.58 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.71 Total: 11.31 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.84 Total: -0.26 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -3.38 Total: -112.45 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 1.68 Total: 54.55 kcal Total: -74.40 4.81 -69.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567906952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.425 kcal (2) G-P(sol) polarization free energy of solvation -74.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds