Wall clock time and date at job start Mon Mar 30 2020 00:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47336 * 2 1 4 4 C 1.53004 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46687 * 55.00271 * 4 3 2 6 6 C 1.52998 * 109.47308 * 295.00007 * 4 3 2 7 7 C 1.50696 * 109.46974 * 174.99844 * 4 3 2 8 8 O 1.21288 * 120.00125 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99996 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00123 * 359.97438 * 9 7 4 11 11 C 1.46508 * 119.99903 * 180.02562 * 9 7 4 12 12 H 1.08994 * 110.77991 * 358.20953 * 11 9 7 13 13 C 1.55155 * 110.71880 * 234.97039 * 11 9 7 14 14 C 1.55124 * 101.48678 * 205.96955 * 13 11 9 15 15 N 1.47424 * 104.72207 * 37.30199 * 14 13 11 16 16 C 1.36932 * 125.65125 * 155.82185 * 15 14 13 17 17 H 1.07998 * 120.00011 * 199.40981 * 16 15 14 18 18 C 1.38812 * 119.99864 * 19.39910 * 16 15 14 19 19 N 1.31612 * 120.00174 * 28.45918 * 18 16 15 20 20 Si 1.86805 * 120.00061 * 208.45088 * 18 16 15 21 21 H 1.48497 * 109.47017 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47317 * 300.00639 * 20 18 16 23 23 H 1.48505 * 109.46985 * 60.00660 * 20 18 16 24 24 C 1.47023 * 108.70138 * 335.54847 * 15 14 13 25 25 H 1.09004 * 109.47496 * 59.99643 * 1 2 3 26 26 H 1.09000 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47276 * 300.00158 * 1 2 3 28 28 H 1.09004 * 109.47276 * 239.99841 * 2 1 3 29 29 H 1.09004 * 109.47496 * 120.00357 * 2 1 3 30 30 H 1.08996 * 109.46820 * 59.99926 * 3 2 1 31 31 H 1.08996 * 109.47149 * 299.99936 * 3 2 1 32 32 H 1.09003 * 109.46991 * 60.00235 * 6 4 3 33 33 H 1.08997 * 109.46897 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46823 * 299.99960 * 6 4 3 35 35 H 1.08999 * 109.47393 * 270.00401 * 10 9 7 36 36 H 1.09000 * 109.47350 * 30.00721 * 10 9 7 37 37 H 1.09003 * 109.47544 * 150.00337 * 10 9 7 38 38 H 1.08995 * 111.00634 * 324.21560 * 13 11 9 39 39 H 1.09003 * 111.00385 * 88.02367 * 13 11 9 40 40 H 1.09001 * 110.50102 * 278.45549 * 14 13 11 41 41 H 1.09010 * 110.34257 * 156.06372 * 14 13 11 42 42 H 0.96999 * 119.99939 * 5.64810 * 19 18 16 43 43 H 1.08998 * 109.87770 * 120.70458 * 24 15 14 44 44 H 1.08996 * 109.88326 * 241.71759 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0724 2.8578 -0.1232 8 8 3.2843 3.7762 -0.2036 9 7 5.3975 3.1030 -0.1447 10 6 6.3494 1.9938 -0.0471 11 6 5.8859 4.4791 -0.2646 12 1 5.0545 5.1778 -0.3573 13 6 6.8541 4.6149 -1.4693 14 6 7.7254 5.8212 -1.0309 15 7 7.8972 5.6505 0.4233 16 6 8.9254 6.1595 1.1706 17 1 9.1468 5.7403 2.1410 18 6 9.6834 7.2143 0.6809 19 7 9.1475 8.0768 -0.1563 20 14 11.4642 7.4096 1.2104 21 1 12.0481 8.6056 0.5517 22 1 11.5268 7.5769 2.6846 23 1 12.2332 6.2019 0.8161 24 6 6.7781 4.8485 0.9392 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7161 -0.1908 1.3978 33 1 5.1695 0.8326 1.3085 34 1 3.7158 1.4226 2.1498 35 1 6.5854 1.8087 1.0009 36 1 5.9092 1.0976 -0.4842 37 1 7.2621 2.2497 -0.5853 38 1 7.4579 3.7154 -1.5886 39 1 6.3085 4.8410 -2.3855 40 1 7.2136 6.7595 -1.2449 41 1 8.6924 5.7926 -1.5332 42 1 8.2023 8.0244 -0.3676 43 1 7.1581 3.9424 1.4110 44 1 6.2069 5.4311 1.6620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567906957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:36 Heat of formation + Delta-G solvation = -24.606612 kcal Electronic energy + Delta-G solvation = -21394.200099 eV Core-core repulsion = 18346.836580 eV Total energy + Delta-G solvation = -3047.363519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25827 -37.73583 -36.01460 -35.01625 -32.68257 -31.65103 -29.14606 -27.84097 -26.94784 -26.49497 -24.51828 -23.64932 -21.36095 -20.30287 -19.97007 -18.73523 -17.51593 -17.13852 -16.11854 -15.65916 -15.12742 -14.52222 -14.37065 -13.99866 -13.81704 -13.74677 -13.23058 -13.08676 -12.91817 -12.64681 -12.39521 -12.29239 -12.17572 -11.86330 -11.56465 -11.35769 -11.11809 -11.10447 -10.84325 -10.73266 -10.70028 -10.69027 -10.54815 -10.07159 -10.01779 -9.54589 -9.49638 -8.44833 -8.35763 -6.93334 -6.10661 -3.16917 2.74208 3.10710 3.49776 3.53196 3.71580 4.41528 4.56441 4.59959 4.72059 4.95820 4.98030 5.06739 5.13005 5.21479 5.26787 5.35211 5.37592 5.47166 5.49678 5.55912 5.57728 5.64725 5.68411 5.68720 5.75922 5.82001 5.92902 5.96567 6.00855 6.14443 6.15315 6.22667 6.35453 6.48536 6.63007 6.88620 6.92454 7.02502 7.57261 7.80815 8.31223 8.48651 9.01486 9.80685 10.36644 11.21459 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047337 B = 0.003695 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.362837 B = 7575.932938 C = 7787.430798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.100 4.100 4 C -0.108 4.108 5 H 0.094 0.906 6 C -0.158 4.158 7 C 0.515 3.485 8 O -0.544 6.544 9 N -0.601 5.601 10 C 0.074 3.926 11 C 0.126 3.874 12 H 0.104 0.896 13 C -0.145 4.145 14 C 0.146 3.854 15 N -0.600 5.600 16 C -0.338 4.338 17 H 0.063 0.937 18 C -0.024 4.024 19 N -0.913 5.913 20 Si 1.066 2.934 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.294 1.294 24 C 0.129 3.871 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.052 0.948 42 H 0.269 0.731 43 H 0.029 0.971 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 -18.119 -1.107 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.129 4.129 5 H 0.112 0.888 6 C -0.215 4.215 7 C 0.303 3.697 8 O -0.422 6.422 9 N -0.333 5.333 10 C -0.069 4.069 11 C 0.023 3.977 12 H 0.122 0.878 13 C -0.184 4.184 14 C 0.020 3.980 15 N -0.327 5.327 16 C -0.466 4.466 17 H 0.081 0.919 18 C -0.227 4.227 19 N -0.554 5.554 20 Si 0.895 3.105 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.002 3.998 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.985 -16.687 -1.304 19.490 hybrid contribution -1.315 -0.907 0.346 1.634 sum -11.300 -17.594 -0.958 20.932 Atomic orbital electron populations 1.21761 0.95839 1.01362 1.02014 1.21598 0.95951 0.96752 1.01964 1.21430 0.92381 0.96473 1.03545 1.21299 0.97610 0.93632 1.00397 0.88782 1.22094 1.02505 1.01037 0.95904 1.20695 0.81874 0.91311 0.75820 1.90677 1.54928 1.46546 1.50030 1.47827 1.05619 1.07637 1.72211 1.21940 0.94091 0.88929 1.01903 1.22185 0.97076 0.82030 0.96424 0.87828 1.23223 0.97917 1.00452 0.96783 1.21553 0.97256 0.93584 0.85630 1.44510 1.24009 1.61988 1.02231 1.19701 1.08075 1.15206 1.03642 0.91888 1.25803 1.05720 0.91384 0.99769 1.70776 1.14971 1.31920 1.37692 0.83516 0.75681 0.75872 0.75413 1.21061 1.21988 1.22087 1.21564 0.89204 0.95190 0.93810 0.92709 0.92899 0.92698 0.92122 0.91756 0.91321 0.91185 0.91441 0.90941 0.92133 0.92153 0.91134 0.90415 0.91201 0.91637 0.95325 0.92916 0.91970 0.95344 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.15 0.37 -0.77 16 2 C -0.13 -0.99 5.69 -26.73 -0.15 -1.14 16 3 C -0.10 -1.05 4.03 -26.73 -0.11 -1.16 16 4 C -0.11 -1.15 1.92 -91.77 -0.18 -1.33 16 5 H 0.09 0.84 7.40 -51.93 -0.38 0.46 16 6 C -0.16 -1.42 8.58 37.16 0.32 -1.11 16 7 C 0.51 7.83 7.08 -10.99 -0.08 7.75 16 8 O -0.54 -10.40 15.29 5.55 0.08 -10.32 16 9 N -0.60 -9.12 2.88 -171.84 -0.50 -9.62 16 10 C 0.07 0.87 7.69 59.84 0.46 1.33 16 11 C 0.13 2.36 3.35 -66.09 -0.22 2.14 16 12 H 0.10 2.13 7.00 -51.93 -0.36 1.77 16 13 C -0.14 -2.66 6.62 -24.47 -0.16 -2.82 16 14 C 0.15 3.42 5.39 -2.41 -0.01 3.41 16 15 N -0.60 -15.47 3.26 -169.93 -0.55 -16.02 16 16 C -0.34 -9.68 10.00 -15.06 -0.15 -9.83 16 17 H 0.06 1.80 7.97 -52.49 -0.42 1.38 16 18 C -0.02 -0.71 5.10 -17.43 -0.09 -0.80 16 19 N -0.91 -27.91 13.01 55.49 0.72 -27.19 16 20 Si 1.07 25.42 30.00 -169.99 -5.10 20.32 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.13 2.81 6.88 -3.06 -0.02 2.79 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 32 H 0.07 0.48 6.56 -51.93 -0.34 0.13 16 33 H 0.07 0.62 4.53 -51.93 -0.24 0.39 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.67 6.70 -51.93 -0.35 0.33 16 36 H 0.07 0.61 6.01 -51.93 -0.31 0.30 16 37 H 0.08 0.97 6.08 -51.93 -0.32 0.65 16 38 H 0.07 1.18 6.09 -51.93 -0.32 0.87 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.73 6.80 -51.93 -0.35 0.37 16 41 H 0.05 1.32 8.08 -51.92 -0.42 0.90 16 42 H 0.27 8.29 6.19 -40.82 -0.25 8.04 16 43 H 0.03 0.60 6.94 -51.93 -0.36 0.24 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -33.03 334.02 -7.68 -40.72 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.35 Total: -1.40 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -0.02 Total: -1.52 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.33 Total: -52.83 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.10 Total: 20.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.03 -7.68 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567906957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.111 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds