Wall clock time and date at job start Mon Mar 30 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47336 * 2 1 4 4 C 1.53004 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46687 * 55.00271 * 4 3 2 6 6 C 1.52998 * 109.47308 * 295.00007 * 4 3 2 7 7 C 1.50696 * 109.46974 * 174.99844 * 4 3 2 8 8 O 1.21288 * 120.00125 * 0.02562 * 7 4 3 9 9 N 1.34773 * 119.99996 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00123 * 359.97438 * 9 7 4 11 11 C 1.46508 * 119.99903 * 180.02562 * 9 7 4 12 12 H 1.08994 * 110.77991 * 358.20953 * 11 9 7 13 13 C 1.55155 * 110.71880 * 234.97039 * 11 9 7 14 14 C 1.55124 * 101.48678 * 205.96955 * 13 11 9 15 15 N 1.47424 * 104.72207 * 37.30199 * 14 13 11 16 16 C 1.36932 * 125.65125 * 155.82185 * 15 14 13 17 17 H 1.07998 * 120.00011 * 199.40981 * 16 15 14 18 18 C 1.38812 * 119.99864 * 19.39910 * 16 15 14 19 19 N 1.31612 * 120.00174 * 28.45918 * 18 16 15 20 20 Si 1.86805 * 120.00061 * 208.45088 * 18 16 15 21 21 H 1.48497 * 109.47017 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47317 * 300.00639 * 20 18 16 23 23 H 1.48505 * 109.46985 * 60.00660 * 20 18 16 24 24 C 1.47023 * 108.70138 * 335.54847 * 15 14 13 25 25 H 1.09004 * 109.47496 * 59.99643 * 1 2 3 26 26 H 1.09000 * 109.47469 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47276 * 300.00158 * 1 2 3 28 28 H 1.09004 * 109.47276 * 239.99841 * 2 1 3 29 29 H 1.09004 * 109.47496 * 120.00357 * 2 1 3 30 30 H 1.08996 * 109.46820 * 59.99926 * 3 2 1 31 31 H 1.08996 * 109.47149 * 299.99936 * 3 2 1 32 32 H 1.09003 * 109.46991 * 60.00235 * 6 4 3 33 33 H 1.08997 * 109.46897 * 179.97438 * 6 4 3 34 34 H 1.08996 * 109.46823 * 299.99960 * 6 4 3 35 35 H 1.08999 * 109.47393 * 270.00401 * 10 9 7 36 36 H 1.09000 * 109.47350 * 30.00721 * 10 9 7 37 37 H 1.09003 * 109.47544 * 150.00337 * 10 9 7 38 38 H 1.08995 * 111.00634 * 324.21560 * 13 11 9 39 39 H 1.09003 * 111.00385 * 88.02367 * 13 11 9 40 40 H 1.09001 * 110.50102 * 278.45549 * 14 13 11 41 41 H 1.09010 * 110.34257 * 156.06372 * 14 13 11 42 42 H 0.96999 * 119.99939 * 5.64810 * 19 18 16 43 43 H 1.08998 * 109.87770 * 120.70458 * 24 15 14 44 44 H 1.08996 * 109.88326 * 241.71759 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9336 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0724 2.8578 -0.1232 8 8 3.2843 3.7762 -0.2036 9 7 5.3975 3.1030 -0.1447 10 6 6.3494 1.9938 -0.0471 11 6 5.8859 4.4791 -0.2646 12 1 5.0545 5.1778 -0.3573 13 6 6.8541 4.6149 -1.4693 14 6 7.7254 5.8212 -1.0309 15 7 7.8972 5.6505 0.4233 16 6 8.9254 6.1595 1.1706 17 1 9.1468 5.7403 2.1410 18 6 9.6834 7.2143 0.6809 19 7 9.1475 8.0768 -0.1563 20 14 11.4642 7.4096 1.2104 21 1 12.0481 8.6056 0.5517 22 1 11.5268 7.5769 2.6846 23 1 12.2332 6.2019 0.8161 24 6 6.7781 4.8485 0.9392 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7161 -0.1908 1.3978 33 1 5.1695 0.8326 1.3085 34 1 3.7158 1.4226 2.1498 35 1 6.5854 1.8087 1.0009 36 1 5.9092 1.0976 -0.4842 37 1 7.2621 2.2497 -0.5853 38 1 7.4579 3.7154 -1.5886 39 1 6.3085 4.8410 -2.3855 40 1 7.2136 6.7595 -1.2449 41 1 8.6924 5.7926 -1.5332 42 1 8.2023 8.0244 -0.3676 43 1 7.1581 3.9424 1.4110 44 1 6.2069 5.4311 1.6620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567906957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:35 Heat of formation + Delta-G solvation = -44.984384 kcal Electronic energy + Delta-G solvation = -21395.083745 eV Core-core repulsion = 18346.836580 eV Total energy + Delta-G solvation = -3048.247165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.49598 -39.34817 -36.93656 -36.49898 -34.35450 -32.73715 -31.00261 -29.38216 -28.06200 -27.32220 -26.40820 -24.76553 -22.35514 -22.22777 -21.15842 -19.96226 -19.60709 -18.34035 -17.39606 -16.60629 -16.28344 -16.22252 -15.80534 -15.54198 -15.17589 -14.89781 -14.67833 -14.49133 -14.11818 -13.75970 -13.55877 -13.40692 -13.12076 -13.05792 -12.75887 -12.64795 -12.54540 -12.47266 -12.33346 -12.11004 -11.90195 -11.85764 -11.74654 -11.64442 -11.60131 -11.39175 -10.73081 -10.53212 -9.70136 -9.08200 -8.37654 -5.41894 1.55654 1.57654 1.65390 1.84660 1.89291 2.63207 3.14188 3.38348 3.54421 3.66856 3.80095 3.80921 3.96380 4.05517 4.17589 4.29967 4.32423 4.34686 4.37624 4.45634 4.55828 4.67459 4.73410 4.79386 4.79802 4.88900 4.91058 4.94245 4.96708 5.00935 5.05824 5.12798 5.18343 5.25589 5.31142 5.45174 5.47330 5.52712 5.64242 6.25473 6.38889 6.82506 7.11604 7.64070 8.22268 8.92969 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047337 B = 0.003695 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.362837 B = 7575.932938 C = 7787.430798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.098 4.098 5 H 0.125 0.875 6 C -0.155 4.155 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.599 5.599 10 C 0.067 3.933 11 C 0.140 3.860 12 H 0.078 0.922 13 C -0.122 4.122 14 C 0.148 3.852 15 N -0.620 5.620 16 C -0.351 4.351 17 H 0.060 0.940 18 C -0.077 4.077 19 N -0.941 5.941 20 Si 1.121 2.879 21 H -0.292 1.292 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.131 3.869 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.002 0.998 41 H 0.031 0.969 42 H 0.253 0.747 43 H 0.045 0.955 44 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.477 -21.617 -1.105 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.137 4.137 4 C -0.119 4.119 5 H 0.143 0.857 6 C -0.212 4.212 7 C 0.298 3.702 8 O -0.473 6.473 9 N -0.331 5.331 10 C -0.074 4.074 11 C 0.035 3.965 12 H 0.097 0.903 13 C -0.161 4.161 14 C 0.022 3.978 15 N -0.347 5.347 16 C -0.479 4.479 17 H 0.078 0.922 18 C -0.273 4.273 19 N -0.583 5.583 20 Si 0.944 3.056 21 H -0.218 1.218 22 H -0.200 1.200 23 H -0.201 1.201 24 C 0.005 3.995 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.019 0.981 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -9.443 -20.247 -1.290 22.378 hybrid contribution -1.573 0.184 0.388 1.630 sum -11.015 -20.062 -0.901 22.905 Atomic orbital electron populations 1.21787 0.95873 1.02141 1.01456 1.21567 0.95932 0.94719 1.03307 1.21408 0.92496 0.98109 1.01680 1.21365 0.97419 0.90517 1.02573 0.85732 1.22113 1.03011 1.02096 0.93975 1.21662 0.81252 0.92925 0.74356 1.90660 1.56096 1.48494 1.52048 1.47870 1.06495 1.06742 1.71959 1.22255 0.93400 0.88887 1.02889 1.21699 0.95625 0.84219 0.94962 0.90345 1.23071 0.97056 0.98891 0.97102 1.21462 0.96832 0.94855 0.84640 1.44781 1.24699 1.61943 1.03281 1.19999 1.08913 1.15041 1.03955 0.92182 1.27335 1.09413 0.91037 0.99523 1.70907 1.14096 1.33557 1.39764 0.82803 0.70731 0.76117 0.75976 1.21754 1.20042 1.20058 1.21620 0.88510 0.94671 0.94739 0.93321 0.91401 0.93346 0.90645 0.90363 0.93345 0.93114 0.88563 0.90077 0.93881 0.91321 0.87113 0.90845 0.88780 0.89733 0.98054 0.95008 0.93700 0.93694 0.98230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.50 5.69 30.59 0.17 -1.33 16 3 C -0.10 -1.93 4.03 30.60 0.12 -1.80 16 4 C -0.10 -1.80 1.92 -11.54 -0.02 -1.83 16 5 H 0.12 1.61 7.40 -2.39 -0.02 1.59 16 6 C -0.15 -2.24 8.58 71.98 0.62 -1.62 16 7 C 0.51 14.84 7.08 87.66 0.62 15.47 16 8 O -0.59 -23.08 15.29 -3.05 -0.05 -23.12 16 9 N -0.60 -17.16 2.88 -815.95 -2.35 -19.52 16 10 C 0.07 1.31 7.69 127.77 0.98 2.30 16 11 C 0.14 5.24 3.35 46.18 0.15 5.39 16 12 H 0.08 3.35 7.00 -2.39 -0.02 3.34 16 13 C -0.12 -4.39 6.62 32.06 0.21 -4.18 16 14 C 0.15 7.14 5.39 86.93 0.47 7.61 16 15 N -0.62 -32.65 3.26 -691.55 -2.26 -34.90 16 16 C -0.35 -20.36 10.00 84.03 0.84 -19.52 16 17 H 0.06 3.45 7.97 -2.91 -0.02 3.42 16 18 C -0.08 -4.50 5.10 84.86 0.43 -4.06 16 19 N -0.94 -59.28 13.01 21.65 0.28 -59.00 16 20 Si 1.12 51.32 30.00 68.60 2.06 53.38 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 C 0.13 5.78 6.88 86.73 0.60 6.38 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.80 6.56 -2.39 -0.02 0.79 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.18 7.96 -2.39 -0.02 1.16 16 32 H 0.10 0.88 6.56 -2.39 -0.02 0.87 16 33 H 0.08 1.05 4.53 -2.39 -0.01 1.04 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 1.27 6.70 -2.39 -0.02 1.26 16 36 H 0.11 1.31 6.01 -2.39 -0.01 1.30 16 37 H 0.07 1.55 6.08 -2.39 -0.01 1.54 16 38 H 0.09 2.95 6.09 -2.39 -0.01 2.94 16 39 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 40 H 0.00 0.09 6.80 -2.39 -0.02 0.07 16 41 H 0.03 1.64 8.08 -2.38 -0.02 1.62 16 42 H 0.25 16.35 6.19 -92.71 -0.57 15.78 16 43 H 0.05 1.85 6.94 -2.39 -0.02 1.83 16 44 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -75.39 334.02 4.76 -70.62 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.16 Total: 11.04 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.91 Total: 1.50 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.33 Total: -113.42 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.06 Total: 53.38 kcal Total: -75.39 4.76 -70.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567906957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.639 kcal (2) G-P(sol) polarization free energy of solvation -75.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds