Wall clock time and date at job start Mon Mar 30 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47282 * 2 1 4 4 C 1.52998 * 109.47279 * 120.00479 * 2 1 3 5 5 H 1.08998 * 109.47078 * 299.99280 * 4 2 1 6 6 C 1.53004 * 109.47405 * 59.99575 * 4 2 1 7 7 N 1.46493 * 109.47386 * 174.99873 * 6 4 2 8 8 C 1.34774 * 120.00172 * 179.97438 * 7 6 4 9 9 O 1.21281 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.00002 * 180.02562 * 8 7 6 11 11 H 1.08999 * 115.56047 * 325.70605 * 10 8 7 12 12 C 1.53000 * 117.49681 * 111.39157 * 10 8 7 13 13 C 1.53002 * 60.02940 * 107.47810 * 12 10 8 14 14 C 1.52999 * 117.49968 * 107.50530 * 13 12 10 15 15 C 1.53002 * 117.49773 * 252.51785 * 13 12 10 16 16 N 1.46504 * 109.47112 * 179.97438 * 4 2 1 17 17 C 1.36929 * 119.99704 * 84.99822 * 16 4 2 18 18 H 1.08002 * 120.00754 * 359.97438 * 17 16 4 19 19 C 1.38818 * 119.99981 * 180.02562 * 17 16 4 20 20 N 1.31622 * 120.00099 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99896 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47108 * 90.00264 * 21 19 17 23 23 H 1.48503 * 109.47120 * 210.00143 * 21 19 17 24 24 H 1.48499 * 109.47132 * 330.00319 * 21 19 17 25 25 H 1.09005 * 109.46842 * 299.99903 * 1 2 3 26 26 H 1.08995 * 109.47598 * 59.99277 * 1 2 3 27 27 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46842 * 240.00097 * 2 1 3 29 29 H 1.09004 * 109.47288 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47207 * 300.00210 * 3 2 1 31 31 H 1.08998 * 109.47261 * 60.00606 * 3 2 1 32 32 H 1.09003 * 109.47139 * 55.00010 * 6 4 2 33 33 H 1.08997 * 109.46743 * 295.00657 * 6 4 2 34 34 H 0.96999 * 119.99966 * 0.02562 * 7 6 4 35 35 H 1.09002 * 117.49833 * 214.97915 * 12 10 8 36 36 H 1.09002 * 117.49953 * 359.97438 * 12 10 8 37 37 H 1.08994 * 109.47641 * 111.39010 * 14 13 12 38 38 H 1.09000 * 109.46660 * 231.39296 * 14 13 12 39 39 H 1.08997 * 109.47098 * 351.38476 * 14 13 12 40 40 H 1.09005 * 109.47034 * 8.60952 * 15 13 12 41 41 H 1.08996 * 109.47323 * 128.60841 * 15 13 12 42 42 H 1.08997 * 109.47719 * 248.61411 * 15 13 12 43 43 H 0.96999 * 120.00116 * 264.99761 * 16 4 2 44 44 H 0.96999 * 119.99932 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1639 1.2492 7 7 2.1142 -2.8884 2.3804 8 6 1.8052 -4.1846 2.5825 9 8 1.0439 -4.7514 1.8274 10 6 2.4058 -4.9298 3.7466 11 1 3.4230 -4.6436 4.0139 12 6 1.4664 -5.3420 4.8818 13 6 2.0155 -6.3995 3.9220 14 6 3.0828 -7.3550 4.4591 15 6 1.0455 -6.9993 2.9020 16 7 3.5051 -0.7218 1.2488 17 6 4.1902 0.3527 1.7497 18 1 3.6506 1.2009 2.1447 19 6 5.5783 0.3525 1.7489 20 7 6.2369 1.3852 2.2309 21 14 6.5117 -1.1140 1.0652 22 1 6.7584 -0.9113 -0.3851 23 1 7.8096 -1.2489 1.7740 24 1 5.7090 -2.3476 1.2630 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.8183 -2.6512 0.3177 33 1 0.4437 -2.1651 1.3387 34 1 2.7228 -2.4350 2.9846 35 1 1.8657 -5.3270 5.8960 36 1 0.4142 -5.0738 4.7868 37 1 2.6674 -8.3601 4.5315 38 1 3.9372 -7.3628 3.7823 39 1 3.4043 -7.0228 5.4462 40 1 0.1061 -6.4469 2.9254 41 1 1.4806 -6.9340 1.9048 42 1 0.8587 -8.0443 3.1491 43 1 3.9897 -1.4834 0.8938 44 1 7.2069 1.3852 2.2300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568448227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:39 Heat of formation + Delta-G solvation = -18.267082 kcal Electronic energy + Delta-G solvation = -21344.937493 eV Core-core repulsion = 18297.848877 eV Total energy + Delta-G solvation = -3047.088616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.07916 -37.90630 -36.73611 -33.89652 -33.15486 -30.88524 -29.70338 -28.15205 -27.46789 -26.27776 -24.49235 -22.94077 -21.58483 -20.26016 -19.59026 -19.01393 -17.62647 -16.77488 -15.65599 -15.43136 -14.89761 -14.39446 -14.18350 -14.06709 -13.71431 -13.49969 -13.27447 -13.03064 -12.79810 -12.53807 -12.47111 -12.16197 -12.00986 -11.82405 -11.65681 -11.27846 -11.25233 -11.11002 -10.90135 -10.62538 -10.29475 -10.22845 -10.15402 -10.00109 -9.87284 -9.51551 -9.30330 -8.95779 -8.68724 -7.35892 -5.84055 -3.19970 2.70534 3.31416 3.36028 3.40084 3.42900 3.77378 4.52303 4.60482 4.69481 4.80390 5.03030 5.13811 5.21859 5.28491 5.40294 5.52205 5.57296 5.58361 5.62909 5.67471 5.78015 5.84022 5.87433 5.92504 5.96358 6.00426 6.08010 6.15344 6.17168 6.28950 6.37688 6.47696 6.51982 6.56919 6.64595 6.86937 6.99543 7.32108 7.87580 7.92068 8.34234 8.52609 9.12301 9.84655 10.04178 11.33550 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.005877 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.212477 B = 4763.023727 C = 6070.983057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.111 3.889 7 N -0.713 5.713 8 C 0.539 3.461 9 O -0.549 6.549 10 C -0.188 4.188 11 H 0.122 0.878 12 C -0.147 4.147 13 C -0.097 4.097 14 C -0.116 4.116 15 C -0.100 4.100 16 N -0.746 5.746 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.930 5.930 21 Si 0.879 3.121 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -12.210 2.720 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.013 4.013 7 N -0.364 5.364 8 C 0.325 3.675 9 O -0.428 6.428 10 C -0.209 4.209 11 H 0.140 0.860 12 C -0.184 4.184 13 C -0.097 4.097 14 C -0.173 4.173 15 C -0.157 4.157 16 N -0.389 5.389 17 C -0.371 4.371 18 H 0.112 0.888 19 C -0.188 4.188 20 N -0.578 5.578 21 Si 0.710 3.290 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.204 1.204 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.246 0.754 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.195 0.805 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.216 -12.359 2.293 16.198 hybrid contribution 1.266 -0.515 -0.274 1.394 sum -8.950 -12.874 2.018 15.809 Atomic orbital electron populations 1.21934 0.96634 1.00941 1.01159 1.21694 0.93784 0.98037 0.99498 1.21825 1.04404 0.94229 0.99214 1.20530 0.85015 0.91300 0.96655 0.92017 1.21769 0.97666 0.93055 0.88813 1.46005 1.48735 1.10872 1.30803 1.19619 0.80926 0.81789 0.85154 1.90656 1.36843 1.67637 1.47616 1.22407 1.01201 0.98797 0.98481 0.86006 1.23186 0.98895 1.02114 0.94218 1.21570 0.99541 0.88637 0.99972 1.21393 0.97242 0.98231 1.00481 1.21326 0.98194 0.98400 0.97797 1.42832 1.00376 1.20615 1.75095 1.19047 0.89259 0.96067 1.32702 0.88765 1.24651 0.96199 0.97053 1.00940 1.69690 1.07053 1.29784 1.51255 0.86640 0.79873 0.83453 0.79039 1.21194 1.21868 1.20371 0.93020 0.93414 0.93099 0.92042 0.89300 0.94975 0.93775 0.92065 0.91292 0.75432 0.87996 0.88394 0.91797 0.92009 0.92294 0.91740 0.91465 0.93594 0.80526 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.84 37.16 0.33 -1.70 16 2 C -0.11 -1.78 2.69 -90.62 -0.24 -2.03 16 3 C -0.14 -2.52 8.26 37.15 0.31 -2.21 16 4 C 0.17 3.08 2.18 -67.93 -0.15 2.93 16 5 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 6 C 0.11 1.80 4.73 -4.04 -0.02 1.78 16 7 N -0.71 -11.39 5.39 -60.29 -0.32 -11.72 16 8 C 0.54 8.56 7.59 -10.98 -0.08 8.47 16 9 O -0.55 -9.88 13.11 5.56 0.07 -9.81 16 10 C -0.19 -2.44 5.91 -91.73 -0.54 -2.99 16 11 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 12 C -0.15 -1.60 9.52 -26.73 -0.25 -1.85 16 13 C -0.10 -1.12 2.70 -154.47 -0.42 -1.54 16 14 C -0.12 -1.10 9.85 37.16 0.37 -0.73 16 15 C -0.10 -1.25 8.09 37.16 0.30 -0.95 16 16 N -0.75 -15.89 4.24 -53.42 -0.23 -16.12 16 17 C -0.24 -6.14 8.05 -15.06 -0.12 -6.26 16 18 H 0.09 2.59 7.62 -52.49 -0.40 2.19 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -27.78 13.97 55.49 0.78 -27.00 16 21 Si 0.88 21.23 27.74 -169.99 -4.71 16.51 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.32 6.52 56.52 0.37 -5.96 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 34 H 0.41 6.59 8.14 -40.82 -0.33 6.26 16 35 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 40 H 0.06 0.88 7.02 -51.93 -0.36 0.51 16 41 H 0.07 0.96 7.26 -51.93 -0.38 0.58 16 42 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 43 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -29.20 345.43 -7.58 -36.78 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -7.74 Total: 13.11 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.62 Total: -6.96 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.22 Total: -54.84 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.20 -7.58 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568448227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.509 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds