Wall clock time and date at job start Mon Mar 30 2020 00:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47282 * 2 1 4 4 C 1.52998 * 109.47279 * 120.00479 * 2 1 3 5 5 H 1.08998 * 109.47078 * 299.99280 * 4 2 1 6 6 C 1.53004 * 109.47405 * 59.99575 * 4 2 1 7 7 N 1.46493 * 109.47386 * 174.99873 * 6 4 2 8 8 C 1.34774 * 120.00172 * 179.97438 * 7 6 4 9 9 O 1.21281 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.00002 * 180.02562 * 8 7 6 11 11 H 1.08999 * 115.56047 * 325.70605 * 10 8 7 12 12 C 1.53000 * 117.49681 * 111.39157 * 10 8 7 13 13 C 1.53002 * 60.02940 * 107.47810 * 12 10 8 14 14 C 1.52999 * 117.49968 * 107.50530 * 13 12 10 15 15 C 1.53002 * 117.49773 * 252.51785 * 13 12 10 16 16 N 1.46504 * 109.47112 * 179.97438 * 4 2 1 17 17 C 1.36929 * 119.99704 * 84.99822 * 16 4 2 18 18 H 1.08002 * 120.00754 * 359.97438 * 17 16 4 19 19 C 1.38818 * 119.99981 * 180.02562 * 17 16 4 20 20 N 1.31622 * 120.00099 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99896 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47108 * 90.00264 * 21 19 17 23 23 H 1.48503 * 109.47120 * 210.00143 * 21 19 17 24 24 H 1.48499 * 109.47132 * 330.00319 * 21 19 17 25 25 H 1.09005 * 109.46842 * 299.99903 * 1 2 3 26 26 H 1.08995 * 109.47598 * 59.99277 * 1 2 3 27 27 H 1.08998 * 109.47301 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46842 * 240.00097 * 2 1 3 29 29 H 1.09004 * 109.47288 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47207 * 300.00210 * 3 2 1 31 31 H 1.08998 * 109.47261 * 60.00606 * 3 2 1 32 32 H 1.09003 * 109.47139 * 55.00010 * 6 4 2 33 33 H 1.08997 * 109.46743 * 295.00657 * 6 4 2 34 34 H 0.96999 * 119.99966 * 0.02562 * 7 6 4 35 35 H 1.09002 * 117.49833 * 214.97915 * 12 10 8 36 36 H 1.09002 * 117.49953 * 359.97438 * 12 10 8 37 37 H 1.08994 * 109.47641 * 111.39010 * 14 13 12 38 38 H 1.09000 * 109.46660 * 231.39296 * 14 13 12 39 39 H 1.08997 * 109.47098 * 351.38476 * 14 13 12 40 40 H 1.09005 * 109.47034 * 8.60952 * 15 13 12 41 41 H 1.08996 * 109.47323 * 128.60841 * 15 13 12 42 42 H 1.08997 * 109.47719 * 248.61411 * 15 13 12 43 43 H 0.96999 * 120.00116 * 264.99761 * 16 4 2 44 44 H 0.96999 * 119.99932 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1639 1.2492 7 7 2.1142 -2.8884 2.3804 8 6 1.8052 -4.1846 2.5825 9 8 1.0439 -4.7514 1.8274 10 6 2.4058 -4.9298 3.7466 11 1 3.4230 -4.6436 4.0139 12 6 1.4664 -5.3420 4.8818 13 6 2.0155 -6.3995 3.9220 14 6 3.0828 -7.3550 4.4591 15 6 1.0455 -6.9993 2.9020 16 7 3.5051 -0.7218 1.2488 17 6 4.1902 0.3527 1.7497 18 1 3.6506 1.2009 2.1447 19 6 5.5783 0.3525 1.7489 20 7 6.2369 1.3852 2.2309 21 14 6.5117 -1.1140 1.0652 22 1 6.7584 -0.9113 -0.3851 23 1 7.8096 -1.2489 1.7740 24 1 5.7090 -2.3476 1.2630 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.8183 -2.6512 0.3177 33 1 0.4437 -2.1651 1.3387 34 1 2.7228 -2.4350 2.9846 35 1 1.8657 -5.3270 5.8960 36 1 0.4142 -5.0738 4.7868 37 1 2.6674 -8.3601 4.5315 38 1 3.9372 -7.3628 3.7823 39 1 3.4043 -7.0228 5.4462 40 1 0.1061 -6.4469 2.9254 41 1 1.4806 -6.9340 1.9048 42 1 0.8587 -8.0443 3.1491 43 1 3.9897 -1.4834 0.8938 44 1 7.2069 1.3852 2.2300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568448227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:39 Heat of formation + Delta-G solvation = -36.356478 kcal Electronic energy + Delta-G solvation = -21345.721908 eV Core-core repulsion = 18297.848877 eV Total energy + Delta-G solvation = -3047.873031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23680 -39.24656 -37.93867 -35.26131 -34.94738 -32.72512 -30.76465 -29.49234 -28.33006 -27.60777 -25.91306 -24.46317 -23.02140 -21.48891 -20.94896 -20.15799 -19.38598 -17.98720 -17.09547 -16.89192 -16.18047 -15.93360 -15.51700 -15.26425 -14.87545 -14.74947 -14.63729 -14.42361 -14.18852 -14.02609 -13.49160 -13.45583 -12.99151 -12.94211 -12.89095 -12.84359 -12.68604 -12.52860 -12.25207 -12.12026 -11.96303 -11.77649 -11.49548 -11.34283 -11.15552 -10.93505 -10.85374 -10.42149 -9.99413 -9.28275 -7.96147 -5.28186 1.38186 1.40620 1.46721 1.53743 2.23426 2.50696 2.80034 3.35147 3.54792 3.66978 3.74868 3.85665 3.87313 4.18100 4.20769 4.25090 4.26758 4.42391 4.59771 4.66306 4.73534 4.81882 4.83518 4.89958 4.93998 4.99612 5.04082 5.07948 5.09069 5.11193 5.15447 5.23139 5.29013 5.32774 5.50211 5.57784 5.61750 5.75239 5.86251 6.26364 6.60536 7.11990 7.27777 7.86505 8.05443 9.24871 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.005877 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.212477 B = 4763.023727 C = 6070.983057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.176 3.824 5 H 0.057 0.943 6 C 0.121 3.879 7 N -0.716 5.716 8 C 0.535 3.465 9 O -0.573 6.573 10 C -0.206 4.206 11 H 0.130 0.870 12 C -0.130 4.130 13 C -0.098 4.098 14 C -0.114 4.114 15 C -0.096 4.096 16 N -0.745 5.745 17 C -0.204 4.204 18 H 0.068 0.932 19 C -0.058 4.058 20 N -0.982 5.982 21 Si 0.940 3.060 22 H -0.290 1.290 23 H -0.302 1.302 24 H -0.255 1.255 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.409 0.591 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.362 0.638 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 -14.194 3.007 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.366 5.366 8 C 0.323 3.677 9 O -0.454 6.454 10 C -0.227 4.227 11 H 0.148 0.852 12 C -0.168 4.168 13 C -0.098 4.098 14 C -0.171 4.171 15 C -0.153 4.153 16 N -0.388 5.388 17 C -0.334 4.334 18 H 0.086 0.914 19 C -0.249 4.249 20 N -0.633 5.633 21 Si 0.770 3.230 22 H -0.218 1.218 23 H -0.229 1.229 24 H -0.180 1.180 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.145 0.855 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.195 0.805 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.557 -14.378 2.570 18.625 hybrid contribution 1.521 0.143 -0.381 1.574 sum -10.037 -14.235 2.188 17.555 Atomic orbital electron populations 1.21847 0.93791 1.02037 1.02168 1.21604 0.96109 0.96475 0.98449 1.21720 1.01583 0.95786 1.00040 1.20663 0.82717 0.92714 0.97123 0.92503 1.21637 0.98331 0.91560 0.88812 1.46053 1.48774 1.11156 1.30662 1.20124 0.80455 0.81552 0.85585 1.90647 1.38037 1.68025 1.48682 1.22443 1.01934 0.99781 0.98558 0.85234 1.23286 0.98295 1.00440 0.94730 1.21719 0.99877 0.88344 0.99880 1.21411 0.96350 0.98386 1.00920 1.21249 0.97479 0.99622 0.96989 1.42804 1.01983 1.19334 1.74707 1.18936 0.89031 0.95755 1.29721 0.91391 1.25267 0.97330 0.99593 1.02758 1.69849 1.06862 1.32245 1.54354 0.85632 0.78345 0.81406 0.77617 1.21754 1.22889 1.17975 0.92542 0.91956 0.91955 0.92167 0.93405 0.92936 0.94207 0.92657 0.89909 0.75506 0.85524 0.88855 0.90440 0.92435 0.90901 0.93342 0.93747 0.91453 0.80480 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.84 71.98 0.64 -2.80 16 2 C -0.10 -3.29 2.69 -10.80 -0.03 -3.31 16 3 C -0.13 -4.75 8.26 71.98 0.59 -4.15 16 4 C 0.18 6.00 2.18 44.99 0.10 6.09 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 3.70 4.73 86.38 0.41 4.11 16 7 N -0.72 -21.88 5.39 -463.06 -2.49 -24.37 16 8 C 0.53 16.31 7.59 87.66 0.67 16.98 16 9 O -0.57 -20.15 13.11 -3.03 -0.04 -20.19 16 10 C -0.21 -4.98 5.91 -11.51 -0.07 -5.05 16 11 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 12 C -0.13 -2.50 9.52 30.60 0.29 -2.21 16 13 C -0.10 -2.05 2.70 -52.16 -0.14 -2.19 16 14 C -0.11 -1.81 9.85 71.98 0.71 -1.10 16 15 C -0.10 -2.27 8.09 71.98 0.58 -1.69 16 16 N -0.75 -31.26 4.24 -322.93 -1.37 -32.63 16 17 C -0.20 -10.48 8.05 84.04 0.68 -9.80 16 18 H 0.07 3.84 7.62 -2.91 -0.02 3.82 16 19 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 20 N -0.98 -60.36 13.97 21.65 0.30 -60.06 16 21 Si 0.94 44.22 27.74 68.60 1.90 46.12 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 24 H -0.25 -10.85 6.52 99.48 0.65 -10.20 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 28 H 0.06 1.92 8.14 -2.38 -0.02 1.91 16 29 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 2.34 6.71 -2.39 -0.02 2.32 16 34 H 0.41 12.65 8.14 -92.71 -0.75 11.89 16 35 H 0.13 1.82 8.05 -2.39 -0.02 1.80 16 36 H 0.09 1.89 8.05 -2.39 -0.02 1.88 16 37 H 0.08 1.03 7.92 -2.39 -0.02 1.01 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.96 7.90 -2.39 -0.02 0.94 16 40 H 0.05 1.27 7.02 -2.38 -0.02 1.26 16 41 H 0.04 1.24 7.26 -2.39 -0.02 1.22 16 42 H 0.07 1.25 7.92 -2.39 -0.02 1.24 16 43 H 0.36 15.30 5.66 -92.71 -0.52 14.77 16 44 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -63.91 345.43 2.83 -61.08 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.36 Total: 37.93 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 4.89 Total: -7.88 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -3.56 Total: -117.06 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.04 Total: -20.19 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Total: -63.91 2.83 -61.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568448227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.725 kcal (2) G-P(sol) polarization free energy of solvation -63.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds