Wall clock time and date at job start Mon Mar 30 2020 00:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46541 * 2 1 4 4 C 1.52999 * 109.47227 * 119.99701 * 2 1 3 5 5 H 1.08998 * 109.47323 * 300.00775 * 4 2 1 6 6 C 1.52992 * 109.46993 * 180.02562 * 4 2 1 7 7 N 1.46506 * 109.47161 * 185.00064 * 6 4 2 8 8 C 1.34773 * 119.99968 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00360 * 359.73034 * 8 7 6 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 6 11 11 H 1.09001 * 115.54755 * 325.44545 * 10 8 7 12 12 C 1.52992 * 117.49953 * 111.11584 * 10 8 7 13 13 C 1.52997 * 117.50187 * 179.74130 * 10 8 7 14 14 C 1.53001 * 117.49792 * 359.97438 * 13 10 8 15 15 C 1.52995 * 117.49900 * 145.01978 * 13 10 8 16 16 N 1.46509 * 109.46829 * 60.00409 * 4 2 1 17 17 C 1.36937 * 119.99984 * 274.99987 * 16 4 2 18 18 H 1.08004 * 119.99839 * 359.97438 * 17 16 4 19 19 C 1.38807 * 119.99818 * 180.02562 * 17 16 4 20 20 N 1.31622 * 120.00074 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46706 * 90.00479 * 21 19 17 23 23 H 1.48497 * 109.47588 * 210.00322 * 21 19 17 24 24 H 1.48497 * 109.47191 * 330.00846 * 21 19 17 25 25 H 1.08997 * 109.46926 * 299.99380 * 1 2 3 26 26 H 1.08994 * 109.47464 * 60.00119 * 1 2 3 27 27 H 1.09007 * 109.46697 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47155 * 240.00142 * 2 1 3 29 29 H 1.09000 * 109.47333 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47867 * 299.99897 * 3 2 1 31 31 H 1.09003 * 109.47551 * 60.00242 * 3 2 1 32 32 H 1.09004 * 109.47116 * 65.00700 * 6 4 2 33 33 H 1.08998 * 109.47794 * 305.00611 * 6 4 2 34 34 H 0.96998 * 119.99507 * 0.02562 * 7 6 4 35 35 H 1.09000 * 117.49962 * 214.98385 * 12 10 8 36 36 H 1.09000 * 117.50343 * 359.97438 * 12 10 8 37 37 H 1.09003 * 109.46791 * 60.00217 * 14 13 10 38 38 H 1.09001 * 109.47351 * 179.97438 * 14 13 10 39 39 H 1.08994 * 109.47722 * 300.00521 * 14 13 10 40 40 H 1.08997 * 109.47101 * 59.99861 * 15 13 10 41 41 H 1.09003 * 109.46917 * 179.97438 * 15 13 10 42 42 H 1.09005 * 109.47099 * 299.99872 * 15 13 10 43 43 H 0.96998 * 119.99586 * 94.99988 * 16 4 2 44 44 H 0.96998 * 119.99970 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5128 2.3810 8 6 5.3835 -1.6540 2.5826 9 8 6.1716 -1.1293 1.8246 10 6 5.8860 -2.4693 3.7462 11 1 5.2791 -2.4219 4.6504 12 6 6.5826 -3.7947 3.4316 13 6 7.4010 -2.5968 3.9177 14 6 8.2900 -1.8873 2.8943 15 6 7.9485 -2.6479 5.3454 16 7 1.5518 -2.1025 1.2492 17 6 0.3102 -2.3898 1.7504 18 1 -0.3089 -1.5982 2.1460 19 6 -0.1522 -3.6986 1.7508 20 7 -1.3457 -3.9747 2.2320 21 14 0.9188 -5.0679 1.0672 22 1 1.7608 -5.6275 2.1549 23 1 0.0558 -6.1392 0.5082 24 1 1.7915 -4.5253 -0.0049 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4427 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.9329 0.3033 1.3394 33 1 3.9338 -1.1545 0.3182 34 1 3.4281 -1.9362 2.9845 35 1 6.4342 -4.6192 4.1290 36 1 6.6771 -4.0772 2.3831 37 1 8.0866 -0.8166 2.9169 38 1 9.3375 -2.0630 3.1392 39 1 8.0791 -2.2761 1.8982 40 1 7.5264 -3.5075 5.8658 41 1 9.0343 -2.7392 5.3150 42 1 7.6750 -1.7338 5.8724 43 1 2.1080 -2.8134 0.8942 44 1 -1.6690 -4.8893 2.2320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568448229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:42 Heat of formation + Delta-G solvation = -18.255105 kcal Electronic energy + Delta-G solvation = -21361.334021 eV Core-core repulsion = 18314.245924 eV Total energy + Delta-G solvation = -3047.088097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08228 -37.90558 -36.73737 -33.90139 -33.15329 -30.88413 -29.70271 -28.15128 -27.47252 -26.27666 -24.48940 -22.94754 -21.57546 -20.26988 -19.57314 -19.01405 -17.63317 -16.77442 -15.65615 -15.40642 -14.95682 -14.31866 -14.17916 -14.06219 -13.76934 -13.49705 -13.34063 -12.94043 -12.79350 -12.53720 -12.47502 -12.21245 -11.98888 -11.82068 -11.65849 -11.27339 -11.22832 -11.10610 -10.89786 -10.66089 -10.25188 -10.21410 -10.17252 -10.01058 -9.87587 -9.51638 -9.30088 -8.95319 -8.69456 -7.35694 -5.83921 -3.19881 2.70796 3.31321 3.36481 3.38877 3.42300 3.79895 4.52555 4.61605 4.69912 4.81288 5.02746 5.13697 5.19863 5.28205 5.41109 5.51942 5.57057 5.57522 5.66631 5.68245 5.78063 5.82734 5.88021 5.92945 5.96025 6.01466 6.08269 6.14488 6.17298 6.29126 6.37730 6.47567 6.52110 6.56885 6.64473 6.86493 6.99703 7.32026 7.86937 7.92159 8.34372 8.52039 9.12436 9.84823 10.04303 11.33697 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.005908 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.147672 B = 4737.801983 C = 6056.528511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.111 3.889 7 N -0.714 5.714 8 C 0.538 3.462 9 O -0.548 6.548 10 C -0.187 4.187 11 H 0.122 0.878 12 C -0.148 4.148 13 C -0.097 4.097 14 C -0.100 4.100 15 C -0.116 4.116 16 N -0.746 5.746 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.879 3.121 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.278 1.278 25 H 0.043 0.957 26 H 0.031 0.969 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.362 0.638 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.771 4.790 2.492 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.013 4.013 7 N -0.365 5.365 8 C 0.325 3.675 9 O -0.427 6.427 10 C -0.208 4.208 11 H 0.140 0.860 12 C -0.185 4.185 13 C -0.097 4.097 14 C -0.157 4.157 15 C -0.173 4.173 16 N -0.389 5.389 17 C -0.371 4.371 18 H 0.112 0.888 19 C -0.188 4.188 20 N -0.578 5.578 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.204 1.204 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.195 0.805 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.062 5.174 2.063 16.059 hybrid contribution 0.054 -1.323 -0.255 1.348 sum 15.116 3.851 1.808 15.703 Atomic orbital electron populations 1.21825 0.94395 1.04236 0.99215 1.21696 0.97285 0.94533 0.99512 1.21934 1.00388 0.97192 1.01159 1.20529 0.89233 0.87105 0.96650 0.91991 1.21771 0.95527 0.95211 0.88796 1.46014 1.06731 1.52794 1.30946 1.19631 0.82370 0.80409 0.85109 1.90658 1.55181 1.49290 1.47572 1.22377 0.97038 1.01665 0.99712 0.86039 1.23201 1.02022 0.90493 1.02798 1.21560 0.90323 1.00513 0.97332 1.21326 0.96187 1.00918 0.97285 1.21388 1.00923 1.01938 0.93015 1.42842 1.18524 1.02629 1.74913 1.19047 0.91512 0.94075 1.32431 0.88770 1.24645 0.96394 0.96871 1.00905 1.69690 1.17628 1.19172 1.51308 0.86647 0.80176 0.83164 0.79090 1.21108 1.21853 1.20411 0.93774 0.94969 0.89310 0.92063 0.93097 0.93421 0.93013 0.91251 0.92075 0.75429 0.87945 0.88371 0.91468 0.93602 0.91744 0.92305 0.91811 0.92040 0.80529 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 2 C -0.11 -1.79 2.69 -90.62 -0.24 -2.04 16 3 C -0.15 -2.03 8.84 37.16 0.33 -1.71 16 4 C 0.17 3.08 2.18 -67.93 -0.15 2.93 16 5 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 6 C 0.11 1.79 4.73 -4.04 -0.02 1.77 16 7 N -0.71 -11.29 5.39 -60.29 -0.32 -11.62 16 8 C 0.54 8.48 7.59 -10.98 -0.08 8.40 16 9 O -0.55 -9.82 13.10 5.56 0.07 -9.75 16 10 C -0.19 -2.41 5.91 -91.77 -0.54 -2.95 16 11 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 12 C -0.15 -1.74 9.52 -26.74 -0.25 -2.00 16 13 C -0.10 -1.12 2.70 -154.51 -0.42 -1.53 16 14 C -0.10 -1.24 8.09 37.16 0.30 -0.94 16 15 C -0.12 -1.05 9.85 37.16 0.37 -0.68 16 16 N -0.75 -15.91 4.24 -53.42 -0.23 -16.13 16 17 C -0.24 -6.14 8.05 -15.06 -0.12 -6.26 16 18 H 0.09 2.59 7.63 -52.48 -0.40 2.19 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -27.79 13.97 55.49 0.78 -27.01 16 21 Si 0.88 21.22 27.73 -169.99 -4.71 16.51 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.93 6.01 -51.92 -0.31 1.61 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.41 6.51 8.14 -40.82 -0.33 6.18 16 35 H 0.10 1.03 8.05 -51.93 -0.42 0.62 16 36 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 37 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 38 H 0.05 0.47 7.92 -51.93 -0.41 0.06 16 39 H 0.06 0.90 7.01 -51.93 -0.36 0.54 16 40 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 41 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.36 7.90 5.66 -40.82 -0.23 7.67 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -29.20 345.42 -7.58 -36.78 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.74 Total: 13.12 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.62 Total: -7.11 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.22 Total: -54.76 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.20 -7.58 -36.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568448229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.528 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds