Wall clock time and date at job start Mon Mar 30 2020 00:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46541 * 2 1 4 4 C 1.52999 * 109.47227 * 119.99701 * 2 1 3 5 5 H 1.08998 * 109.47323 * 300.00775 * 4 2 1 6 6 C 1.52992 * 109.46993 * 180.02562 * 4 2 1 7 7 N 1.46506 * 109.47161 * 185.00064 * 6 4 2 8 8 C 1.34773 * 119.99968 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00360 * 359.73034 * 8 7 6 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 6 11 11 H 1.09001 * 115.54755 * 325.44545 * 10 8 7 12 12 C 1.52992 * 117.49953 * 111.11584 * 10 8 7 13 13 C 1.52997 * 117.50187 * 179.74130 * 10 8 7 14 14 C 1.53001 * 117.49792 * 359.97438 * 13 10 8 15 15 C 1.52995 * 117.49900 * 145.01978 * 13 10 8 16 16 N 1.46509 * 109.46829 * 60.00409 * 4 2 1 17 17 C 1.36937 * 119.99984 * 274.99987 * 16 4 2 18 18 H 1.08004 * 119.99839 * 359.97438 * 17 16 4 19 19 C 1.38807 * 119.99818 * 180.02562 * 17 16 4 20 20 N 1.31622 * 120.00074 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00276 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46706 * 90.00479 * 21 19 17 23 23 H 1.48497 * 109.47588 * 210.00322 * 21 19 17 24 24 H 1.48497 * 109.47191 * 330.00846 * 21 19 17 25 25 H 1.08997 * 109.46926 * 299.99380 * 1 2 3 26 26 H 1.08994 * 109.47464 * 60.00119 * 1 2 3 27 27 H 1.09007 * 109.46697 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47155 * 240.00142 * 2 1 3 29 29 H 1.09000 * 109.47333 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47867 * 299.99897 * 3 2 1 31 31 H 1.09003 * 109.47551 * 60.00242 * 3 2 1 32 32 H 1.09004 * 109.47116 * 65.00700 * 6 4 2 33 33 H 1.08998 * 109.47794 * 305.00611 * 6 4 2 34 34 H 0.96998 * 119.99507 * 0.02562 * 7 6 4 35 35 H 1.09000 * 117.49962 * 214.98385 * 12 10 8 36 36 H 1.09000 * 117.50343 * 359.97438 * 12 10 8 37 37 H 1.09003 * 109.46791 * 60.00217 * 14 13 10 38 38 H 1.09001 * 109.47351 * 179.97438 * 14 13 10 39 39 H 1.08994 * 109.47722 * 300.00521 * 14 13 10 40 40 H 1.08997 * 109.47101 * 59.99861 * 15 13 10 41 41 H 1.09003 * 109.46917 * 179.97438 * 15 13 10 42 42 H 1.09005 * 109.47099 * 299.99872 * 15 13 10 43 43 H 0.96998 * 119.99586 * 94.99988 * 16 4 2 44 44 H 0.96998 * 119.99970 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5128 2.3810 8 6 5.3835 -1.6540 2.5826 9 8 6.1716 -1.1293 1.8246 10 6 5.8860 -2.4693 3.7462 11 1 5.2791 -2.4219 4.6504 12 6 6.5826 -3.7947 3.4316 13 6 7.4010 -2.5968 3.9177 14 6 8.2900 -1.8873 2.8943 15 6 7.9485 -2.6479 5.3454 16 7 1.5518 -2.1025 1.2492 17 6 0.3102 -2.3898 1.7504 18 1 -0.3089 -1.5982 2.1460 19 6 -0.1522 -3.6986 1.7508 20 7 -1.3457 -3.9747 2.2320 21 14 0.9188 -5.0679 1.0672 22 1 1.7608 -5.6275 2.1549 23 1 0.0558 -6.1392 0.5082 24 1 1.7915 -4.5253 -0.0049 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1299 1.4427 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.9329 0.3033 1.3394 33 1 3.9338 -1.1545 0.3182 34 1 3.4281 -1.9362 2.9845 35 1 6.4342 -4.6192 4.1290 36 1 6.6771 -4.0772 2.3831 37 1 8.0866 -0.8166 2.9169 38 1 9.3375 -2.0630 3.1392 39 1 8.0791 -2.2761 1.8982 40 1 7.5264 -3.5075 5.8658 41 1 9.0343 -2.7392 5.3150 42 1 7.6750 -1.7338 5.8724 43 1 2.1080 -2.8134 0.8942 44 1 -1.6690 -4.8893 2.2320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568448229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:41 Heat of formation + Delta-G solvation = -36.316839 kcal Electronic energy + Delta-G solvation = -21362.117236 eV Core-core repulsion = 18314.245924 eV Total energy + Delta-G solvation = -3047.871312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24222 -39.24894 -37.94511 -35.26373 -34.94667 -32.72424 -30.76305 -29.49274 -28.32277 -27.60960 -25.91645 -24.48005 -23.01932 -21.50667 -20.93469 -20.16026 -19.38502 -17.99375 -17.08138 -16.89610 -16.22922 -15.85045 -15.56930 -15.20055 -15.01057 -14.71326 -14.56584 -14.45503 -14.23552 -13.94841 -13.51971 -13.45708 -12.96540 -12.95181 -12.88355 -12.84264 -12.68928 -12.48527 -12.33018 -12.12373 -11.94702 -11.76489 -11.51675 -11.34548 -11.15701 -10.91977 -10.86336 -10.42171 -9.99720 -9.28057 -7.95966 -5.28072 1.39123 1.40763 1.46970 1.53391 2.21833 2.51040 2.80726 3.34443 3.54979 3.67286 3.75839 3.85214 3.86462 4.15880 4.20226 4.25282 4.26507 4.42097 4.59534 4.66677 4.73316 4.82073 4.83432 4.89764 4.93868 4.98803 5.03844 5.07297 5.09397 5.11492 5.15157 5.22925 5.29175 5.32964 5.50387 5.57825 5.61531 5.74991 5.86341 6.26538 6.60542 7.12164 7.27666 7.86694 8.05607 9.25077 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.005908 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.147672 B = 4737.801983 C = 6056.528511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.176 3.824 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.716 5.716 8 C 0.535 3.465 9 O -0.573 6.573 10 C -0.201 4.201 11 H 0.137 0.863 12 C -0.145 4.145 13 C -0.091 4.091 14 C -0.097 4.097 15 C -0.112 4.112 16 N -0.745 5.745 17 C -0.204 4.204 18 H 0.068 0.932 19 C -0.058 4.058 20 N -0.982 5.982 21 Si 0.940 3.060 22 H -0.277 1.277 23 H -0.305 1.305 24 H -0.264 1.264 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.409 0.591 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.362 0.638 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.011 5.241 2.715 18.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.198 4.198 4 C 0.067 3.933 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.366 5.366 8 C 0.323 3.677 9 O -0.453 6.453 10 C -0.222 4.222 11 H 0.155 0.845 12 C -0.182 4.182 13 C -0.092 4.092 14 C -0.154 4.154 15 C -0.169 4.169 16 N -0.388 5.388 17 C -0.335 4.335 18 H 0.086 0.914 19 C -0.249 4.249 20 N -0.633 5.633 21 Si 0.769 3.231 22 H -0.203 1.203 23 H -0.233 1.233 24 H -0.189 1.189 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.142 0.858 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.195 0.805 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.352 5.665 2.274 18.394 hybrid contribution -0.631 -1.324 -0.351 1.508 sum 16.720 4.341 1.924 17.381 Atomic orbital electron populations 1.21721 0.95666 1.01691 1.00051 1.21605 0.96022 0.96586 0.98442 1.21847 1.01044 0.94781 1.02176 1.20664 0.90411 0.85065 0.97118 0.92432 1.21633 0.93842 0.96042 0.88803 1.46053 1.07000 1.52812 1.30780 1.20132 0.81919 0.80161 0.85534 1.90649 1.55620 1.50374 1.48705 1.22449 0.98362 1.02227 0.99135 0.84493 1.23287 1.01442 0.90746 1.02715 1.21701 0.89215 0.99736 0.98555 1.21257 0.97794 0.99746 0.96602 1.21409 1.01708 1.02673 0.91140 1.42814 1.17059 1.04424 1.74527 1.18936 0.92076 0.92955 1.29518 0.91395 1.25261 0.97628 0.99299 1.02709 1.69850 1.19884 1.19202 1.54381 0.85645 0.78514 0.80085 0.78847 1.20331 1.23271 1.18894 0.94189 0.92928 0.93398 0.92283 0.91959 0.91967 0.92512 0.89886 0.92705 0.75455 0.85816 0.89603 0.93171 0.91436 0.93858 0.91100 0.90542 0.91724 0.80491 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.26 71.98 0.59 -4.16 16 2 C -0.11 -3.31 2.69 -10.79 -0.03 -3.33 16 3 C -0.14 -3.45 8.84 71.98 0.64 -2.81 16 4 C 0.18 5.99 2.18 44.99 0.10 6.09 16 5 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 3.70 4.73 86.38 0.41 4.11 16 7 N -0.72 -21.69 5.39 -463.05 -2.50 -24.18 16 8 C 0.53 16.19 7.59 87.66 0.67 16.86 16 9 O -0.57 -20.07 13.10 -3.04 -0.04 -20.11 16 10 C -0.20 -4.81 5.91 -11.54 -0.07 -4.88 16 11 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 12 C -0.14 -3.10 9.52 30.59 0.29 -2.81 16 13 C -0.09 -1.91 2.70 -52.18 -0.14 -2.05 16 14 C -0.10 -2.28 8.09 71.98 0.58 -1.70 16 15 C -0.11 -1.68 9.85 71.98 0.71 -0.97 16 16 N -0.75 -31.29 4.24 -322.94 -1.37 -32.66 16 17 C -0.20 -10.50 8.05 84.03 0.68 -9.82 16 18 H 0.07 3.84 7.63 -2.91 -0.02 3.82 16 19 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 20 N -0.98 -60.32 13.97 21.65 0.30 -60.02 16 21 Si 0.94 44.13 27.73 68.60 1.90 46.03 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16 24 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 2.09 6.01 -2.38 -0.01 2.07 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.40 6.54 -2.39 -0.02 1.39 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 2.35 6.71 -2.39 -0.02 2.33 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 12.50 8.14 -92.71 -0.75 11.75 16 35 H 0.12 2.11 8.05 -2.39 -0.02 2.09 16 36 H 0.09 2.06 8.05 -2.39 -0.02 2.04 16 37 H 0.05 1.34 7.26 -2.39 -0.02 1.32 16 38 H 0.07 1.25 7.92 -2.39 -0.02 1.24 16 39 H 0.04 1.18 7.01 -2.39 -0.02 1.17 16 40 H 0.07 0.91 7.90 -2.39 -0.02 0.89 16 41 H 0.08 0.96 7.92 -2.39 -0.02 0.94 16 42 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.36 15.33 5.66 -92.71 -0.52 14.81 16 44 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -63.76 345.42 2.83 -60.92 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.36 Total: 38.24 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.89 Total: -8.22 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -3.56 Total: -116.87 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.04 Total: -20.11 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Total: -63.76 2.83 -60.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568448229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.608 kcal (2) G-P(sol) polarization free energy of solvation -63.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds