Wall clock time and date at job start Mon Mar 30 2020 00:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 C 1.52998 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47052 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99508 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00297 * 179.97438 * 5 4 3 8 8 C 1.48118 * 127.03156 * 359.95106 * 7 5 4 9 9 C 1.54945 * 103.25072 * 219.33154 * 8 7 5 10 10 C 1.54611 * 102.84288 * 322.62429 * 9 8 7 11 11 C 1.53003 * 110.32650 * 262.95888 * 10 9 8 12 12 C 1.52996 * 110.33185 * 140.74116 * 10 9 8 13 13 N 1.46505 * 109.47099 * 64.37717 * 12 10 9 14 14 C 1.36937 * 119.99824 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00469 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99532 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00423 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99643 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47369 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46830 * 120.00071 * 18 16 14 21 21 H 1.48502 * 109.46717 * 239.99663 * 18 16 14 22 22 C 1.47484 * 127.03387 * 179.97438 * 7 5 4 23 23 H 1.09005 * 109.46860 * 299.99989 * 1 2 3 24 24 H 1.08997 * 109.46819 * 60.00068 * 1 2 3 25 25 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47325 * 239.99680 * 2 1 3 27 27 H 1.09004 * 109.47198 * 119.99872 * 2 1 3 28 28 H 1.08993 * 109.46945 * 60.00333 * 3 2 1 29 29 H 1.08992 * 109.46804 * 299.99620 * 3 2 1 30 30 H 1.09003 * 109.47657 * 60.00488 * 4 3 2 31 31 H 1.09004 * 109.47420 * 299.99785 * 4 3 2 32 32 H 1.08996 * 110.66106 * 100.89622 * 8 7 5 33 33 H 1.08999 * 110.80476 * 337.84373 * 8 7 5 34 34 H 1.09003 * 110.73641 * 204.28448 * 9 8 7 35 35 H 1.09003 * 110.89592 * 81.03689 * 9 8 7 36 36 H 1.09009 * 109.46987 * 175.61826 * 11 10 9 37 37 H 1.09003 * 109.46847 * 295.61527 * 11 10 9 38 38 H 1.09001 * 109.47321 * 55.62010 * 11 10 9 39 39 H 1.08992 * 109.47803 * 184.38183 * 12 10 9 40 40 H 1.09002 * 109.46805 * 304.38390 * 12 10 9 41 41 H 0.96999 * 119.99665 * 0.02562 * 13 12 10 42 42 H 0.96993 * 120.00591 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.91322 * 35.14794 * 22 7 5 44 44 H 1.08997 * 109.91328 * 273.87427 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7851 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 6.4905 2.1100 0.0036 9 6 7.5389 2.7328 0.9596 10 6 7.4461 4.2417 0.6354 11 6 8.5412 4.6406 -0.3560 12 6 7.5612 5.0689 1.9172 13 7 8.8894 4.8768 2.5049 14 6 9.2243 5.5217 3.6655 15 1 8.5096 6.1722 4.1475 16 6 10.4830 5.3400 4.2220 17 7 11.3543 4.5476 3.6344 18 14 10.9402 6.2203 5.8049 19 1 9.7937 7.0465 6.2608 20 1 11.2756 5.2190 6.8490 21 1 12.1152 7.0956 5.5628 22 6 6.0556 4.4294 0.0000 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9562 -0.8900 30 1 3.9338 0.9285 -0.8891 31 1 3.9330 0.9287 0.8909 32 1 6.9054 1.9912 -0.9972 33 1 6.1391 1.1530 0.3891 34 1 8.5361 2.3514 0.7400 35 1 7.2759 2.5448 2.0006 36 1 8.4156 5.6870 -0.6344 37 1 9.5183 4.5025 0.1071 38 1 8.4698 4.0165 -1.2468 39 1 7.4165 6.1236 1.6834 40 1 6.7996 4.7464 2.6273 41 1 9.5314 4.2928 2.0718 42 1 12.2336 4.4203 4.0234 43 1 5.4709 5.1363 0.5886 44 1 6.1603 4.7913 -1.0228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569659513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:16 Heat of formation + Delta-G solvation = -47.843761 kcal Electronic energy + Delta-G solvation = -20830.408447 eV Core-core repulsion = 17782.037290 eV Total energy + Delta-G solvation = -3048.371157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.15091 -38.18126 -35.49270 -34.79989 -32.73048 -30.82834 -30.14457 -29.34700 -26.73560 -25.75055 -24.23508 -22.97227 -22.35633 -21.24053 -19.18938 -18.61731 -17.22922 -16.74052 -16.34301 -15.65661 -15.25108 -14.60713 -14.19782 -14.07238 -13.86417 -13.64701 -13.39956 -13.13949 -12.80033 -12.53913 -12.47452 -12.26764 -12.06728 -11.70308 -11.50972 -11.42765 -11.36642 -11.19597 -11.00144 -10.83455 -10.78384 -10.59069 -10.30882 -10.22354 -9.91707 -9.76494 -9.63407 -8.88097 -8.61165 -6.91572 -5.77549 -3.05223 2.68805 3.01631 3.43087 3.49420 3.51273 4.38216 4.58433 4.65787 4.72746 4.77588 4.83361 5.03634 5.06512 5.14314 5.28899 5.31494 5.38666 5.45876 5.52896 5.59377 5.60072 5.63068 5.70916 5.76110 5.89650 5.91031 5.95970 6.05143 6.05601 6.08834 6.17570 6.24764 6.35648 6.42427 6.52440 6.67660 6.79371 6.87638 7.61952 7.71279 8.21866 8.41992 9.53631 10.10930 10.46474 11.45556 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.003442 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.211809 B = 8132.492105 C = 8457.585131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.136 4.136 5 C 0.528 3.472 6 O -0.547 6.547 7 N -0.620 5.620 8 C 0.098 3.902 9 C -0.119 4.119 10 C -0.080 4.080 11 C -0.132 4.132 12 C 0.167 3.833 13 N -0.729 5.729 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.116 3.884 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.020 0.980 40 H 0.019 0.981 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.077 0.923 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.303 -10.030 -10.799 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.176 4.176 5 C 0.318 3.682 6 O -0.425 6.425 7 N -0.354 5.354 8 C -0.025 4.025 9 C -0.157 4.157 10 C -0.081 4.081 11 C -0.190 4.190 12 C 0.039 3.961 13 N -0.374 5.374 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.007 4.007 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.852 -9.442 -10.654 20.573 hybrid contribution 0.722 0.275 0.784 1.101 sum -14.130 -9.167 -9.870 19.522 Atomic orbital electron populations 1.21760 0.95758 1.01447 1.02024 1.21550 0.96087 0.96650 1.01980 1.21380 0.92778 0.96516 1.03612 1.21673 0.97862 0.93814 1.04222 1.20378 0.80286 0.91721 0.75858 1.90694 1.54375 1.46815 1.50625 1.48882 1.04829 1.08884 1.72763 1.22638 0.87535 0.92224 1.00107 1.22771 0.98858 0.94247 0.99824 1.21658 0.93476 0.96000 0.96974 1.21813 0.99125 1.00739 0.97308 1.20695 0.89324 0.95654 0.90387 1.42366 1.11048 1.56234 1.27709 1.19281 0.97373 1.20573 0.99517 0.91227 1.24712 0.96600 1.00389 0.99321 1.69655 1.06578 1.41375 1.40748 0.86127 0.78023 0.78836 0.83295 1.20590 1.21914 1.21899 1.22141 0.92829 0.85183 1.00538 0.92632 0.92711 0.92839 0.92046 0.91932 0.91172 0.91296 0.89159 0.88937 0.91031 0.90395 0.89733 0.90147 0.92680 0.90833 0.93472 0.96182 0.96282 0.78080 0.93609 0.90491 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.10 -1.02 4.50 -26.73 -0.12 -1.14 16 4 C -0.14 -1.33 4.63 -27.88 -0.13 -1.46 16 5 C 0.53 7.44 7.89 -10.98 -0.09 7.35 16 6 O -0.55 -9.76 16.32 5.55 0.09 -9.67 16 7 N -0.62 -8.41 3.29 -169.75 -0.56 -8.97 16 8 C 0.10 1.09 6.95 -2.13 -0.01 1.07 16 9 C -0.12 -1.69 5.73 -24.86 -0.14 -1.83 16 10 C -0.08 -1.25 0.67 -153.13 -0.10 -1.35 16 11 C -0.13 -1.98 8.05 37.16 0.30 -1.68 16 12 C 0.17 3.37 4.85 -4.04 -0.02 3.35 16 13 N -0.73 -17.93 5.12 -59.91 -0.31 -18.24 16 14 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 18 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 C 0.12 1.71 6.29 -2.97 -0.02 1.69 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.80 7.91 -51.93 -0.41 0.39 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.70 7.24 -51.93 -0.38 0.33 16 34 H 0.08 1.18 7.85 -51.93 -0.41 0.78 16 35 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 36 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.07 1.28 6.75 -51.93 -0.35 0.92 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 41 H 0.38 9.73 6.18 -40.82 -0.25 9.48 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.08 1.26 7.59 -51.93 -0.39 0.87 16 44 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -31.94 350.47 -8.20 -40.14 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.03 Total: 4.19 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.37 Total: -3.06 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.14 Total: -54.27 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.94 -8.20 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569659513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.707 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds