Wall clock time and date at job start Mon Mar 30 2020 00:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47046 * 2 1 4 4 C 1.52998 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47052 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99508 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00297 * 179.97438 * 5 4 3 8 8 C 1.48118 * 127.03156 * 359.95106 * 7 5 4 9 9 C 1.54945 * 103.25072 * 219.33154 * 8 7 5 10 10 C 1.54611 * 102.84288 * 322.62429 * 9 8 7 11 11 C 1.53003 * 110.32650 * 262.95888 * 10 9 8 12 12 C 1.52996 * 110.33185 * 140.74116 * 10 9 8 13 13 N 1.46505 * 109.47099 * 64.37717 * 12 10 9 14 14 C 1.36937 * 119.99824 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00469 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99532 * 180.02562 * 14 13 12 17 17 N 1.31619 * 120.00423 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99643 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47369 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46830 * 120.00071 * 18 16 14 21 21 H 1.48502 * 109.46717 * 239.99663 * 18 16 14 22 22 C 1.47484 * 127.03387 * 179.97438 * 7 5 4 23 23 H 1.09005 * 109.46860 * 299.99989 * 1 2 3 24 24 H 1.08997 * 109.46819 * 60.00068 * 1 2 3 25 25 H 1.09000 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47325 * 239.99680 * 2 1 3 27 27 H 1.09004 * 109.47198 * 119.99872 * 2 1 3 28 28 H 1.08993 * 109.46945 * 60.00333 * 3 2 1 29 29 H 1.08992 * 109.46804 * 299.99620 * 3 2 1 30 30 H 1.09003 * 109.47657 * 60.00488 * 4 3 2 31 31 H 1.09004 * 109.47420 * 299.99785 * 4 3 2 32 32 H 1.08996 * 110.66106 * 100.89622 * 8 7 5 33 33 H 1.08999 * 110.80476 * 337.84373 * 8 7 5 34 34 H 1.09003 * 110.73641 * 204.28448 * 9 8 7 35 35 H 1.09003 * 110.89592 * 81.03689 * 9 8 7 36 36 H 1.09009 * 109.46987 * 175.61826 * 11 10 9 37 37 H 1.09003 * 109.46847 * 295.61527 * 11 10 9 38 38 H 1.09001 * 109.47321 * 55.62010 * 11 10 9 39 39 H 1.08992 * 109.47803 * 184.38183 * 12 10 9 40 40 H 1.09002 * 109.46805 * 304.38390 * 12 10 9 41 41 H 0.96999 * 119.99665 * 0.02562 * 13 12 10 42 42 H 0.96993 * 120.00591 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.91322 * 35.14794 * 22 7 5 44 44 H 1.08997 * 109.91328 * 273.87427 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7851 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 6.4905 2.1100 0.0036 9 6 7.5389 2.7328 0.9596 10 6 7.4461 4.2417 0.6354 11 6 8.5412 4.6406 -0.3560 12 6 7.5612 5.0689 1.9172 13 7 8.8894 4.8768 2.5049 14 6 9.2243 5.5217 3.6655 15 1 8.5096 6.1722 4.1475 16 6 10.4830 5.3400 4.2220 17 7 11.3543 4.5476 3.6344 18 14 10.9402 6.2203 5.8049 19 1 9.7937 7.0465 6.2608 20 1 11.2756 5.2190 6.8490 21 1 12.1152 7.0956 5.5628 22 6 6.0556 4.4294 0.0000 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9562 -0.8900 30 1 3.9338 0.9285 -0.8891 31 1 3.9330 0.9287 0.8909 32 1 6.9054 1.9912 -0.9972 33 1 6.1391 1.1530 0.3891 34 1 8.5361 2.3514 0.7400 35 1 7.2759 2.5448 2.0006 36 1 8.4156 5.6870 -0.6344 37 1 9.5183 4.5025 0.1071 38 1 8.4698 4.0165 -1.2468 39 1 7.4165 6.1236 1.6834 40 1 6.7996 4.7464 2.6273 41 1 9.5314 4.2928 2.0718 42 1 12.2336 4.4203 4.0234 43 1 5.4709 5.1363 0.5886 44 1 6.1603 4.7913 -1.0228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569659513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:16 Heat of formation + Delta-G solvation = -67.241117 kcal Electronic energy + Delta-G solvation = -20831.249580 eV Core-core repulsion = 17782.037290 eV Total energy + Delta-G solvation = -3049.212290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28293 -39.39940 -36.50898 -36.19699 -34.37258 -32.26386 -31.31199 -30.50365 -27.89293 -27.40117 -25.41342 -24.15838 -23.92269 -21.92486 -20.32924 -19.88580 -19.17176 -17.91596 -17.32174 -16.71746 -16.49254 -16.15712 -15.73322 -15.30086 -15.07417 -14.92287 -14.50969 -14.38577 -14.15391 -13.70088 -13.52587 -13.37549 -13.09280 -13.04728 -12.91483 -12.78589 -12.59808 -12.20052 -12.17013 -12.11320 -12.03638 -11.85179 -11.62057 -11.49956 -11.43436 -11.38890 -10.96149 -10.85759 -9.72098 -8.99421 -7.96241 -5.23717 1.46487 1.46833 1.56870 1.62680 1.98858 2.54825 3.35510 3.39027 3.66874 3.74398 3.81880 3.94337 4.06730 4.22640 4.27455 4.34195 4.36784 4.43354 4.47183 4.60794 4.65004 4.73438 4.74990 4.79384 4.89433 4.94570 4.94967 5.01017 5.02646 5.11307 5.12547 5.22184 5.26124 5.31311 5.39654 5.40268 5.48526 5.51274 5.53870 6.26909 6.57851 7.14674 7.34400 8.08432 8.36010 9.27089 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028883 B = 0.003442 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.211809 B = 8132.492105 C = 8457.585131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.127 4.127 5 C 0.520 3.480 6 O -0.595 6.595 7 N -0.622 5.622 8 C 0.107 3.893 9 C -0.118 4.118 10 C -0.073 4.073 11 C -0.125 4.125 12 C 0.168 3.832 13 N -0.734 5.734 14 C -0.246 4.246 15 H 0.067 0.933 16 C -0.069 4.069 17 N -0.964 5.964 18 Si 0.970 3.030 19 H -0.272 1.272 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.120 3.880 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.012 0.988 40 H 0.005 0.995 41 H 0.380 0.620 42 H 0.252 0.748 43 H 0.052 0.948 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.595 -11.750 -11.773 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.141 4.141 4 C -0.166 4.166 5 C 0.311 3.689 6 O -0.476 6.476 7 N -0.355 5.355 8 C -0.015 4.015 9 C -0.157 4.157 10 C -0.074 4.074 11 C -0.182 4.182 12 C 0.041 3.959 13 N -0.378 5.378 14 C -0.378 4.378 15 H 0.085 0.915 16 C -0.262 4.262 17 N -0.615 5.615 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.003 4.003 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.030 0.970 40 H 0.023 0.977 41 H 0.214 0.786 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.157 -11.174 -11.637 22.136 hybrid contribution 0.769 0.854 1.090 1.584 sum -14.388 -10.320 -10.547 20.609 Atomic orbital electron populations 1.21788 0.95798 1.02107 1.01582 1.21518 0.96068 0.94985 1.03087 1.21348 0.93060 0.97796 1.01921 1.21733 0.97510 0.90960 1.06429 1.21237 0.79897 0.93085 0.74655 1.90673 1.55535 1.48622 1.52773 1.49006 1.05365 1.08850 1.72251 1.22783 0.85593 0.92324 1.00777 1.22715 1.00298 0.93270 0.99395 1.21521 0.94547 0.96408 0.94889 1.21738 0.97073 1.01430 0.98001 1.20765 0.86819 0.96096 0.92248 1.42464 1.12458 1.55752 1.27112 1.19598 0.97450 1.20342 1.00452 0.91511 1.25466 0.96683 1.01570 1.02490 1.69785 1.06753 1.42772 1.42156 0.85133 0.77678 0.77700 0.79595 1.19669 1.21815 1.21851 1.21982 0.91728 0.85874 1.00761 0.93384 0.92960 0.91591 0.90513 0.91123 0.93396 0.92639 0.86106 0.87132 0.88209 0.87404 0.89372 0.92630 0.92868 0.93487 0.90077 0.96978 0.97698 0.78591 0.93876 0.92961 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.12 -1.50 5.93 30.60 0.18 -1.32 16 3 C -0.10 -1.87 4.50 30.59 0.14 -1.74 16 4 C -0.13 -2.13 4.63 29.85 0.14 -1.99 16 5 C 0.52 13.92 7.89 87.66 0.69 14.61 16 6 O -0.59 -21.40 16.32 -3.04 -0.05 -21.45 16 7 N -0.62 -15.65 3.29 -809.35 -2.66 -18.31 16 8 C 0.11 2.00 6.95 86.73 0.60 2.60 16 9 C -0.12 -3.20 5.73 31.81 0.18 -3.02 16 10 C -0.07 -2.23 0.67 -51.29 -0.03 -2.27 16 11 C -0.12 -3.58 8.05 71.98 0.58 -3.00 16 12 C 0.17 6.93 4.85 86.38 0.42 7.34 16 13 N -0.73 -36.88 5.12 -343.46 -1.76 -38.64 16 14 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 15 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 16 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 17 N -0.96 -57.87 13.06 21.65 0.28 -57.58 16 18 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 C 0.12 3.44 6.29 86.54 0.54 3.99 16 23 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 29 H 0.05 1.14 8.10 -2.39 -0.02 1.13 16 30 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.51 7.91 -2.39 -0.02 1.49 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.44 7.24 -2.39 -0.02 1.42 16 34 H 0.09 2.33 7.85 -2.39 -0.02 2.31 16 35 H 0.05 1.78 7.84 -2.39 -0.02 1.76 16 36 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.05 1.61 6.75 -2.39 -0.02 1.59 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 40 H 0.01 0.22 8.11 -2.39 -0.02 0.21 16 41 H 0.38 19.63 6.18 -92.71 -0.57 19.06 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.05 1.75 7.59 -2.39 -0.02 1.73 16 44 H 0.08 2.08 7.68 -2.39 -0.02 2.06 16 Total: -1.00 -70.57 350.47 3.68 -66.90 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.38 Total: 23.37 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.46 Total: -2.65 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.14 Total: -114.53 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -70.57 3.68 -66.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569659513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.345 kcal (2) G-P(sol) polarization free energy of solvation -70.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds