Wall clock time and date at job start Mon Mar 30 2020 00:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 C 1.53007 * 109.46915 * 119.99904 * 2 1 3 5 5 C 1.50705 * 109.47017 * 175.00109 * 4 2 1 6 6 O 1.21286 * 119.99980 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99749 * 180.02562 * 5 4 2 8 8 C 1.47018 * 125.64993 * 359.97196 * 7 5 4 9 9 C 1.54325 * 107.40412 * 178.90064 * 8 7 5 10 10 C 1.55405 * 102.82616 * 337.97548 * 9 8 7 11 11 H 1.09004 * 110.92671 * 277.25231 * 10 9 8 12 12 C 1.53000 * 111.03706 * 153.46985 * 10 9 8 13 13 C 1.52995 * 109.46910 * 72.68520 * 12 10 9 14 14 N 1.46511 * 109.47219 * 179.97438 * 13 12 10 15 15 C 1.36935 * 120.00180 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00065 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00172 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00169 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46815 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47464 * 119.99720 * 19 17 15 22 22 H 1.48499 * 109.47328 * 240.00132 * 19 17 15 23 23 C 1.47426 * 125.64489 * 180.02562 * 7 5 4 24 24 H 1.08999 * 109.46906 * 300.00337 * 1 2 3 25 25 H 1.09006 * 109.46740 * 60.00134 * 1 2 3 26 26 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47387 * 239.99888 * 2 1 3 28 28 H 1.08999 * 109.47420 * 59.99978 * 3 2 1 29 29 H 1.09004 * 109.46991 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47087 * 299.99692 * 3 2 1 31 31 H 1.08998 * 109.46906 * 54.99943 * 4 2 1 32 32 H 1.08995 * 109.47158 * 294.99761 * 4 2 1 33 33 H 1.09002 * 109.88241 * 298.39592 * 8 7 5 34 34 H 1.09000 * 109.88049 * 59.40721 * 8 7 5 35 35 H 1.09000 * 110.72188 * 96.24097 * 9 8 7 36 36 H 1.09002 * 110.72265 * 219.52294 * 9 8 7 37 37 H 1.09008 * 109.47301 * 192.68035 * 12 10 9 38 38 H 1.08997 * 109.47455 * 312.68325 * 12 10 9 39 39 H 1.09001 * 109.47444 * 299.99413 * 13 12 10 40 40 H 1.09004 * 109.47792 * 59.99964 * 13 12 10 41 41 H 0.96998 * 119.99553 * 359.97438 * 14 13 12 42 42 H 0.96997 * 120.00616 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.36956 * 322.93474 * 23 7 5 44 44 H 1.09003 * 110.36599 * 85.25378 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3748 0.2400 7 7 4.2147 -1.4322 2.1892 8 6 3.6121 -2.0244 3.3923 9 6 4.7581 -2.6201 4.2371 10 6 5.8877 -2.8258 3.1899 11 1 5.7497 -3.7607 2.6468 12 6 7.2661 -2.7782 3.8524 13 6 7.4862 -4.0563 4.6639 14 7 8.8063 -4.0111 5.2978 15 6 9.2263 -5.0535 6.0802 16 1 8.5845 -5.9092 6.2297 17 6 10.4767 -5.0103 6.6812 18 7 11.2591 -3.9677 6.4987 19 14 11.0499 -6.4326 7.7480 20 1 9.9931 -7.4750 7.7928 21 1 12.2924 -7.0110 7.1762 22 1 11.3195 -5.9424 9.1236 23 6 5.6771 -1.6059 2.2584 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.0918 -1.2553 3.9632 34 1 2.9135 -2.8113 3.1080 35 1 5.0724 -1.9187 5.0099 36 1 4.4587 -3.5716 4.6768 37 1 8.0357 -2.6982 3.0846 38 1 7.3216 -1.9137 4.5139 39 1 6.7167 -4.1364 5.4317 40 1 7.4307 -4.9209 4.0024 41 1 9.3828 -3.2427 5.1632 42 1 12.1330 -3.9377 6.9183 43 1 6.0821 -1.8109 1.2674 44 1 6.1449 -0.7181 2.6840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569962696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:03 Heat of formation + Delta-G solvation = -50.449051 kcal Electronic energy + Delta-G solvation = -20310.619512 eV Core-core repulsion = 17262.135381 eV Total energy + Delta-G solvation = -3048.484131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31437 -38.15050 -35.72604 -35.13144 -33.01999 -30.99216 -29.60889 -28.86700 -27.34410 -26.85083 -23.92470 -23.01307 -21.58932 -20.61066 -20.17622 -19.13637 -17.27786 -17.10552 -16.23054 -16.02939 -14.94605 -14.78709 -14.57222 -14.16415 -14.05615 -13.63396 -13.43440 -13.23972 -12.93813 -12.74379 -12.56569 -12.45616 -12.12713 -12.07591 -11.64542 -11.39538 -11.28091 -11.13584 -11.05633 -10.93898 -10.83445 -10.64802 -10.47823 -10.31531 -10.00304 -9.82229 -9.67186 -8.87292 -8.74179 -6.91595 -5.76302 -3.05042 2.52064 2.85633 3.43227 3.48517 3.51041 4.24576 4.48032 4.51376 4.58419 4.62278 4.68319 4.82660 4.99947 5.08476 5.20827 5.25055 5.31346 5.36392 5.41087 5.43566 5.54903 5.62069 5.63450 5.67683 5.71295 5.80672 5.82682 5.88296 5.91538 6.08336 6.10436 6.14817 6.23141 6.26595 6.36119 6.40402 6.84075 6.88718 7.40926 7.70220 8.06079 8.42814 9.53684 10.12493 10.46665 11.46777 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.061465 B = 0.002652 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.432802 B =10554.777271 C =10820.644633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.154 4.154 4 C -0.132 4.132 5 C 0.526 3.474 6 O -0.540 6.540 7 N -0.620 5.620 8 C 0.100 3.900 9 C -0.127 4.127 10 C -0.094 4.094 11 H 0.084 0.916 12 C -0.116 4.116 13 C 0.155 3.845 14 N -0.735 5.735 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.108 3.892 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.077 0.923 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.265 7.520 -9.814 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.211 4.211 4 C -0.172 4.172 5 C 0.315 3.685 6 O -0.418 6.418 7 N -0.354 5.354 8 C -0.023 4.023 9 C -0.165 4.165 10 C -0.114 4.114 11 H 0.103 0.897 12 C -0.154 4.154 13 C 0.028 3.972 14 N -0.379 5.379 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.014 4.014 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.035 0.965 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.003 7.646 -10.297 25.468 hybrid contribution 0.556 -0.585 0.732 1.089 sum -21.447 7.061 -9.565 24.522 Atomic orbital electron populations 1.21861 0.94963 1.01697 1.01963 1.20877 0.95019 0.96967 0.97203 1.21960 1.03224 0.94938 1.00955 1.21761 0.91786 1.02839 1.00833 1.20403 0.89932 0.77129 0.81037 1.90673 1.70485 1.47740 1.32875 1.48610 1.08257 1.57609 1.20972 1.22093 0.96836 0.97416 0.85995 1.22791 0.94191 1.01983 0.97561 1.22383 0.95646 0.97740 0.95613 0.89737 1.21670 0.94320 0.99973 0.99428 1.20622 0.88927 0.93890 0.93805 1.42393 1.14634 1.22688 1.58211 1.19277 0.99050 0.97383 1.21246 0.91154 1.24760 0.97095 0.98008 1.01331 1.69669 1.10437 1.29587 1.48561 0.86111 0.78381 0.81613 0.80057 1.20563 1.21858 1.21868 1.22346 0.80125 0.98224 1.00679 0.92656 0.92391 0.92694 0.90441 0.93411 0.90672 0.92972 0.89064 0.89059 0.91502 0.91463 0.90095 0.89585 0.91521 0.91574 0.96317 0.96539 0.78313 0.93557 0.90435 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.15 0.34 -0.59 16 2 C -0.08 -0.70 2.57 -90.62 -0.23 -0.93 16 3 C -0.15 -1.42 8.93 37.16 0.33 -1.09 16 4 C -0.13 -1.09 4.37 -27.88 -0.12 -1.21 16 5 C 0.53 6.30 7.57 -10.98 -0.08 6.21 16 6 O -0.54 -8.35 14.22 5.55 0.08 -8.27 16 7 N -0.62 -7.00 3.33 -170.51 -0.57 -7.57 16 8 C 0.10 0.87 6.48 -3.07 -0.02 0.85 16 9 C -0.13 -1.29 5.93 -24.76 -0.15 -1.44 16 10 C -0.09 -1.14 3.00 -88.33 -0.27 -1.40 16 11 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 12 C -0.12 -1.77 4.84 -26.73 -0.13 -1.90 16 13 C 0.16 3.03 6.16 -4.04 -0.02 3.01 16 14 N -0.74 -18.74 5.60 -59.90 -0.34 -19.08 16 15 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 16 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 19 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 C 0.11 1.34 6.38 -2.52 -0.02 1.32 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.07 1.02 7.98 -51.93 -0.41 0.61 16 39 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 44 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -32.57 351.27 -8.58 -41.15 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.14 Total: 3.41 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.61 Total: -4.62 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.18 Total: -54.41 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.57 -8.58 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569962696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.301 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds