Wall clock time and date at job start Mon Mar 30 2020 00:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 C 1.53007 * 109.46915 * 119.99904 * 2 1 3 5 5 C 1.50705 * 109.47017 * 175.00109 * 4 2 1 6 6 O 1.21286 * 119.99980 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99749 * 180.02562 * 5 4 2 8 8 C 1.47018 * 125.64993 * 359.97196 * 7 5 4 9 9 C 1.54325 * 107.40412 * 178.90064 * 8 7 5 10 10 C 1.55405 * 102.82616 * 337.97548 * 9 8 7 11 11 H 1.09004 * 110.92671 * 277.25231 * 10 9 8 12 12 C 1.53000 * 111.03706 * 153.46985 * 10 9 8 13 13 C 1.52995 * 109.46910 * 72.68520 * 12 10 9 14 14 N 1.46511 * 109.47219 * 179.97438 * 13 12 10 15 15 C 1.36935 * 120.00180 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00022 * 0.02562 * 15 14 13 17 17 C 1.38808 * 120.00065 * 180.02562 * 15 14 13 18 18 N 1.31619 * 120.00172 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00169 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46815 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47464 * 119.99720 * 19 17 15 22 22 H 1.48499 * 109.47328 * 240.00132 * 19 17 15 23 23 C 1.47426 * 125.64489 * 180.02562 * 7 5 4 24 24 H 1.08999 * 109.46906 * 300.00337 * 1 2 3 25 25 H 1.09006 * 109.46740 * 60.00134 * 1 2 3 26 26 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47387 * 239.99888 * 2 1 3 28 28 H 1.08999 * 109.47420 * 59.99978 * 3 2 1 29 29 H 1.09004 * 109.46991 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47087 * 299.99692 * 3 2 1 31 31 H 1.08998 * 109.46906 * 54.99943 * 4 2 1 32 32 H 1.08995 * 109.47158 * 294.99761 * 4 2 1 33 33 H 1.09002 * 109.88241 * 298.39592 * 8 7 5 34 34 H 1.09000 * 109.88049 * 59.40721 * 8 7 5 35 35 H 1.09000 * 110.72188 * 96.24097 * 9 8 7 36 36 H 1.09002 * 110.72265 * 219.52294 * 9 8 7 37 37 H 1.09008 * 109.47301 * 192.68035 * 12 10 9 38 38 H 1.08997 * 109.47455 * 312.68325 * 12 10 9 39 39 H 1.09001 * 109.47444 * 299.99413 * 13 12 10 40 40 H 1.09004 * 109.47792 * 59.99964 * 13 12 10 41 41 H 0.96998 * 119.99553 * 359.97438 * 14 13 12 42 42 H 0.96997 * 120.00616 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.36956 * 322.93474 * 23 7 5 44 44 H 1.09003 * 110.36599 * 85.25378 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3748 0.2400 7 7 4.2147 -1.4322 2.1892 8 6 3.6121 -2.0244 3.3923 9 6 4.7581 -2.6201 4.2371 10 6 5.8877 -2.8258 3.1899 11 1 5.7497 -3.7607 2.6468 12 6 7.2661 -2.7782 3.8524 13 6 7.4862 -4.0563 4.6639 14 7 8.8063 -4.0111 5.2978 15 6 9.2263 -5.0535 6.0802 16 1 8.5845 -5.9092 6.2297 17 6 10.4767 -5.0103 6.6812 18 7 11.2591 -3.9677 6.4987 19 14 11.0499 -6.4326 7.7480 20 1 9.9931 -7.4750 7.7928 21 1 12.2924 -7.0110 7.1762 22 1 11.3195 -5.9424 9.1236 23 6 5.6771 -1.6059 2.2584 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.0918 -1.2553 3.9632 34 1 2.9135 -2.8113 3.1080 35 1 5.0724 -1.9187 5.0099 36 1 4.4587 -3.5716 4.6768 37 1 8.0357 -2.6982 3.0846 38 1 7.3216 -1.9137 4.5139 39 1 6.7167 -4.1364 5.4317 40 1 7.4307 -4.9209 4.0024 41 1 9.3828 -3.2427 5.1632 42 1 12.1330 -3.9377 6.9183 43 1 6.0821 -1.8109 1.2674 44 1 6.1449 -0.7181 2.6840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569962696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:03 Heat of formation + Delta-G solvation = -70.436185 kcal Electronic energy + Delta-G solvation = -20311.486219 eV Core-core repulsion = 17262.135381 eV Total energy + Delta-G solvation = -3049.350838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21349 -39.11514 -36.88332 -36.37889 -34.54941 -32.66621 -30.58013 -29.90840 -28.08712 -27.94461 -25.64895 -23.99177 -23.10996 -21.40674 -21.21743 -19.96611 -19.13486 -18.12491 -17.18551 -16.88821 -16.66415 -15.93892 -15.47179 -15.42234 -15.21347 -15.05458 -14.69777 -14.39272 -13.93367 -13.80715 -13.51057 -13.12986 -13.08853 -12.98728 -12.83987 -12.76770 -12.72920 -12.35122 -12.15506 -12.04892 -11.94911 -11.76844 -11.60988 -11.59224 -11.52381 -11.48725 -10.92684 -10.73849 -9.63975 -8.99837 -7.95431 -5.24591 1.47784 1.48878 1.59033 1.63924 2.00632 2.56368 3.38278 3.40285 3.63469 3.75209 3.81448 3.90949 4.01956 4.17911 4.32104 4.33739 4.37027 4.47461 4.60627 4.61616 4.68451 4.71344 4.74305 4.79237 4.84454 4.86919 4.89131 4.99254 5.04423 5.10372 5.13324 5.23763 5.29361 5.34517 5.38988 5.46320 5.47822 5.50392 5.51974 6.27473 6.55758 7.17381 7.32999 8.10286 8.32090 9.28640 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.061465 B = 0.002652 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.432802 B =10554.777271 C =10820.644633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.124 4.124 5 C 0.517 3.483 6 O -0.585 6.585 7 N -0.622 5.622 8 C 0.101 3.899 9 C -0.125 4.125 10 C -0.085 4.085 11 H 0.087 0.913 12 C -0.103 4.103 13 C 0.154 3.846 14 N -0.751 5.751 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.081 4.081 18 N -0.972 5.972 19 Si 0.976 3.024 20 H -0.264 1.264 21 H -0.294 1.294 22 H -0.292 1.292 23 C 0.110 3.890 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.017 0.983 41 H 0.372 0.628 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.016 6.638 -8.961 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C -0.209 4.209 4 C -0.163 4.163 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.355 5.355 8 C -0.021 4.021 9 C -0.163 4.163 10 C -0.105 4.105 11 H 0.106 0.894 12 C -0.141 4.141 13 C 0.028 3.972 14 N -0.394 5.394 15 C -0.375 4.375 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.222 1.222 22 H -0.219 1.219 23 C -0.013 4.013 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.035 0.965 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.815 6.738 -9.437 27.391 hybrid contribution 1.390 -0.288 0.419 1.480 sum -23.425 6.451 -9.019 25.917 Atomic orbital electron populations 1.21806 0.92802 1.02623 1.02607 1.20876 0.96676 0.96007 0.96637 1.21923 1.01153 0.96055 1.01788 1.21811 0.88623 1.04466 1.01439 1.21175 0.91493 0.76226 0.80315 1.90660 1.71658 1.49609 1.34678 1.48727 1.07663 1.57395 1.21762 1.22266 0.96420 0.98626 0.84786 1.22799 0.93741 1.02678 0.97033 1.22210 0.94418 0.97711 0.96120 0.89449 1.21499 0.96189 0.97782 0.98626 1.20798 0.86455 0.95816 0.94108 1.42670 1.16580 1.21757 1.58387 1.19703 0.99131 0.97986 1.20713 0.90416 1.25630 0.97537 1.00739 1.03343 1.69829 1.10684 1.31706 1.50080 0.85039 0.77866 0.78814 0.77839 1.18796 1.22154 1.21945 1.22185 0.81424 0.98024 0.99714 0.91485 0.92319 0.91623 0.92566 0.92132 0.93802 0.92600 0.86717 0.86864 0.89274 0.89073 0.90456 0.88435 0.92672 0.91824 0.95155 0.96489 0.79617 0.94016 0.92117 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.19 71.98 0.66 -0.73 16 2 C -0.08 -1.29 2.57 -10.79 -0.03 -1.32 16 3 C -0.15 -2.73 8.93 71.98 0.64 -2.09 16 4 C -0.12 -1.72 4.37 29.85 0.13 -1.59 16 5 C 0.52 11.87 7.57 87.66 0.66 12.54 16 6 O -0.59 -18.59 14.22 -3.05 -0.04 -18.63 16 7 N -0.62 -13.06 3.33 -811.75 -2.70 -15.76 16 8 C 0.10 1.41 6.48 86.73 0.56 1.97 16 9 C -0.12 -2.20 5.93 31.87 0.19 -2.01 16 10 C -0.08 -1.96 3.00 -9.31 -0.03 -1.98 16 11 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 12 C -0.10 -3.12 4.84 30.59 0.15 -2.98 16 13 C 0.15 5.92 6.16 86.38 0.53 6.45 16 14 N -0.75 -38.46 5.60 -343.43 -1.92 -40.38 16 15 C -0.24 -13.66 9.99 84.03 0.84 -12.82 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 18 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 19 Si 0.98 46.16 29.55 68.60 2.03 48.19 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 23 C 0.11 2.68 6.38 86.86 0.55 3.23 16 24 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 27 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.04 1.07 5.95 -2.38 -0.01 1.06 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.45 7.92 -2.39 -0.02 1.43 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.06 1.97 7.98 -2.39 -0.02 1.95 16 39 H 0.03 1.11 7.75 -2.39 -0.02 1.10 16 40 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.37 20.37 7.67 -92.71 -0.71 19.66 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 44 H 0.06 1.60 8.04 -2.39 -0.02 1.59 16 Total: -1.00 -71.38 351.27 3.21 -68.17 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.24 Total: 23.87 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 5.33 Total: -5.54 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -4.34 Total: -116.05 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.38 3.21 -68.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569962696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.271 kcal (2) G-P(sol) polarization free energy of solvation -71.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds