Wall clock time and date at job start Mon Mar 30 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46784 * 2 1 4 4 C 1.53001 * 109.46784 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46656 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00527 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99572 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00127 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.49831 * 34.92844 * 8 7 5 10 10 C 1.53049 * 109.49633 * 274.83775 * 8 7 5 11 11 C 1.53038 * 109.53481 * 301.41120 * 10 8 7 12 12 C 1.53193 * 109.31563 * 298.63217 * 11 10 8 13 13 N 1.46932 * 108.77366 * 54.63440 * 12 11 10 14 14 C 1.36932 * 120.62981 * 126.36636 * 13 12 11 15 15 H 1.08000 * 120.00583 * 209.02203 * 14 13 12 16 16 C 1.38816 * 119.99754 * 29.02505 * 14 13 12 17 17 N 1.31625 * 119.99982 * 15.03233 * 16 14 13 18 18 Si 1.86799 * 120.00076 * 195.02348 * 16 14 13 19 19 H 1.48495 * 109.47276 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46878 * 120.00354 * 18 16 14 21 21 H 1.48495 * 109.47371 * 240.00285 * 18 16 14 22 22 C 1.46924 * 118.73932 * 306.39509 * 13 12 11 23 23 H 1.08999 * 109.70660 * 293.75186 * 22 13 12 24 24 C 1.53002 * 109.58623 * 173.39235 * 22 13 12 25 25 H 1.08998 * 109.47226 * 59.99700 * 1 2 3 26 26 H 1.09008 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47311 * 299.99287 * 1 2 3 28 28 H 1.08998 * 109.46810 * 240.00758 * 2 1 3 29 29 H 1.08998 * 109.47226 * 120.00300 * 2 1 3 30 30 H 1.09001 * 109.46614 * 60.00286 * 3 2 1 31 31 H 1.08995 * 109.47017 * 299.99942 * 3 2 1 32 32 H 1.08998 * 109.47226 * 300.00300 * 4 3 2 33 33 H 1.09004 * 109.46679 * 60.00341 * 4 3 2 34 34 H 0.96998 * 120.00139 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.45916 * 61.43000 * 10 8 7 36 36 H 1.09000 * 109.45847 * 181.38924 * 10 8 7 37 37 H 1.09001 * 109.49906 * 178.68123 * 11 10 8 38 38 H 1.09005 * 109.49875 * 58.58782 * 11 10 8 39 39 H 1.09001 * 109.58403 * 294.85472 * 12 11 10 40 40 H 1.08991 * 109.58878 * 174.42106 * 12 11 10 41 41 H 0.96998 * 119.99906 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.47152 * 300.71311 * 24 22 13 43 43 H 1.09001 * 109.46583 * 60.71152 * 24 22 13 44 44 H 1.08999 * 109.46871 * 180.70721 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0722 2.8634 0.0013 6 8 3.2841 3.7852 0.0017 7 7 5.3973 3.1097 0.0014 8 6 5.8856 4.4909 0.0026 9 1 5.2127 5.1142 0.5915 10 6 5.9410 5.0143 -1.4346 11 6 6.8598 4.1198 -2.2699 12 6 8.2753 4.1609 -1.6855 13 7 8.2103 3.7983 -0.2631 14 6 8.9921 2.7913 0.2366 15 1 8.6541 2.2157 1.0856 16 6 10.2194 2.5103 -0.3481 17 7 10.7682 3.3754 -1.1744 18 14 11.0920 0.9044 0.0379 19 1 10.2714 0.1109 0.9877 20 1 11.2836 0.1314 -1.2156 21 1 12.4146 1.1938 0.6480 22 6 7.2900 4.5363 0.6128 23 1 7.6172 5.5724 0.7001 24 6 7.2686 3.8868 1.9979 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9289 0.8908 33 1 3.9336 0.9286 -0.8892 34 1 6.0276 2.3725 0.0014 35 1 4.9387 5.0062 -1.8629 36 1 6.3278 6.0334 -1.4352 37 1 6.8804 4.4792 -3.2987 38 1 6.4873 3.0955 -2.2493 39 1 8.6838 5.1662 -1.7879 40 1 8.9100 3.4505 -2.2150 41 1 11.6259 3.1792 -1.5826 42 1 6.9460 2.8495 1.9079 43 1 8.2686 3.9201 2.4303 44 1 6.5759 4.4281 2.6423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571515095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:54 Heat of formation + Delta-G solvation = -44.891764 kcal Electronic energy + Delta-G solvation = -21787.899942 eV Core-core repulsion = 18739.656793 eV Total energy + Delta-G solvation = -3048.243149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.71741 -37.70810 -35.31857 -33.88062 -32.41676 -31.74097 -30.54804 -29.17087 -26.33141 -25.07735 -24.53545 -22.03833 -21.16622 -20.76582 -19.96583 -18.68527 -16.71781 -16.43518 -15.90195 -15.34646 -14.90842 -14.64247 -14.00055 -13.78130 -13.75088 -13.62748 -13.15212 -12.96962 -12.67174 -12.47970 -12.31558 -11.87716 -11.38249 -11.28700 -11.21136 -11.19811 -11.05884 -10.98814 -10.71697 -10.61482 -10.61114 -10.50837 -10.11581 -10.01625 -9.65967 -9.39088 -9.30051 -8.55055 -8.41150 -6.69920 -5.83417 -3.28710 3.05875 3.31974 3.40088 3.41504 3.69949 4.42708 4.84230 4.89478 4.91997 5.24975 5.29567 5.30956 5.32239 5.49939 5.58399 5.61414 5.68863 5.75574 5.77487 5.81755 5.86601 5.97410 6.03442 6.12509 6.22054 6.22800 6.34391 6.34927 6.42373 6.53652 6.67959 6.69363 6.78603 6.93795 6.96888 7.15158 7.37575 7.65645 7.75662 8.09395 8.39711 8.70946 9.15902 9.79022 10.36147 11.24404 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.005204 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.706391 B = 5379.539014 C = 6050.574344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.143 4.143 5 C 0.507 3.493 6 O -0.559 6.559 7 N -0.702 5.702 8 C 0.134 3.866 9 H 0.074 0.926 10 C -0.121 4.121 11 C -0.140 4.140 12 C 0.171 3.829 13 N -0.586 5.586 14 C -0.255 4.255 15 H 0.071 0.929 16 C 0.005 3.995 17 N -0.900 5.900 18 Si 0.900 3.100 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.159 3.841 23 H 0.038 0.962 24 C -0.135 4.135 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.017 0.983 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.044 -4.110 1.509 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.140 4.140 4 C -0.183 4.183 5 C 0.293 3.707 6 O -0.439 6.439 7 N -0.353 5.353 8 C 0.027 3.973 9 H 0.092 0.908 10 C -0.159 4.159 11 C -0.179 4.179 12 C 0.045 3.955 13 N -0.310 5.310 14 C -0.384 4.384 15 H 0.089 0.911 16 C -0.194 4.194 17 N -0.544 5.544 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.218 1.218 22 C 0.052 3.948 23 H 0.056 0.944 24 C -0.193 4.193 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.244 0.756 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.404 -3.465 1.443 13.920 hybrid contribution 0.990 -1.085 0.036 1.469 sum -12.414 -4.551 1.479 13.305 Atomic orbital electron populations 1.21760 0.95939 1.01301 1.01914 1.21562 0.95886 0.96943 1.01966 1.21334 0.93134 0.96148 1.03348 1.21691 0.97664 0.94694 1.04213 1.20649 0.82658 0.91316 0.76088 1.90638 1.55593 1.46561 1.51059 1.46049 1.06419 1.09755 1.73106 1.21500 0.96954 0.82274 0.96573 0.90795 1.21765 0.99079 0.99242 0.95835 1.22138 0.99313 0.98872 0.97562 1.20815 0.91181 0.99154 0.84320 1.44171 1.45045 1.38607 1.03192 1.19205 0.96955 1.07409 1.14869 0.91128 1.25097 0.95989 0.98099 1.00215 1.70030 1.17253 1.33608 1.33540 0.86270 0.79521 0.83600 0.77623 1.20268 1.21647 1.21784 1.20718 0.88124 0.95479 0.90494 0.94443 1.21780 1.01311 1.00285 0.95895 0.92747 0.92959 0.92749 0.92032 0.92043 0.91428 0.91424 0.89245 0.89200 0.75585 0.93218 0.92067 0.93544 0.92877 0.96480 0.89425 0.93694 0.92766 0.91853 0.94249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.10 -1.17 4.50 -26.73 -0.12 -1.29 16 4 C -0.14 -1.73 5.70 -27.88 -0.16 -1.89 16 5 C 0.51 8.14 7.80 -10.99 -0.09 8.05 16 6 O -0.56 -10.72 15.64 5.56 0.09 -10.63 16 7 N -0.70 -11.66 3.47 -53.69 -0.19 -11.85 16 8 C 0.13 2.40 2.33 -67.81 -0.16 2.24 16 9 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 10 C -0.12 -2.17 5.58 -26.69 -0.15 -2.32 16 11 C -0.14 -2.65 5.93 -26.61 -0.16 -2.81 16 12 C 0.17 3.89 5.29 -3.71 -0.02 3.87 16 13 N -0.59 -13.41 2.65 -164.77 -0.44 -13.85 16 14 C -0.25 -6.34 8.61 -15.06 -0.13 -6.47 16 15 H 0.07 1.70 6.20 -52.49 -0.33 1.38 16 16 C 0.00 0.13 4.96 -17.43 -0.09 0.04 16 17 N -0.90 -25.01 11.14 55.49 0.62 -24.40 16 18 Si 0.90 20.62 29.58 -169.99 -5.03 15.60 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.16 3.14 3.20 -67.60 -0.22 2.92 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 C -0.14 -2.44 7.72 37.16 0.29 -2.15 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 31 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.41 6.87 7.77 -40.82 -0.32 6.55 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 1.02 7.53 -51.93 -0.39 0.62 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 41 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.05 0.96 6.38 -51.93 -0.33 0.63 16 43 H 0.06 1.22 7.66 -51.93 -0.40 0.83 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -28.31 340.78 -8.54 -36.85 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.94 Total: 5.18 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.78 Total: -2.04 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.00 Total: -50.09 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.31 -8.54 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571515095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.041 kcal (2) G-P(sol) polarization free energy of solvation -28.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds