Wall clock time and date at job start Mon Mar 30 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46784 * 2 1 4 4 C 1.53001 * 109.46784 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46656 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00527 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99572 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00127 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.49831 * 34.92844 * 8 7 5 10 10 C 1.53049 * 109.49633 * 274.83775 * 8 7 5 11 11 C 1.53038 * 109.53481 * 301.41120 * 10 8 7 12 12 C 1.53193 * 109.31563 * 298.63217 * 11 10 8 13 13 N 1.46932 * 108.77366 * 54.63440 * 12 11 10 14 14 C 1.36932 * 120.62981 * 126.36636 * 13 12 11 15 15 H 1.08000 * 120.00583 * 209.02203 * 14 13 12 16 16 C 1.38816 * 119.99754 * 29.02505 * 14 13 12 17 17 N 1.31625 * 119.99982 * 15.03233 * 16 14 13 18 18 Si 1.86799 * 120.00076 * 195.02348 * 16 14 13 19 19 H 1.48495 * 109.47276 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46878 * 120.00354 * 18 16 14 21 21 H 1.48495 * 109.47371 * 240.00285 * 18 16 14 22 22 C 1.46924 * 118.73932 * 306.39509 * 13 12 11 23 23 H 1.08999 * 109.70660 * 293.75186 * 22 13 12 24 24 C 1.53002 * 109.58623 * 173.39235 * 22 13 12 25 25 H 1.08998 * 109.47226 * 59.99700 * 1 2 3 26 26 H 1.09008 * 109.47234 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47311 * 299.99287 * 1 2 3 28 28 H 1.08998 * 109.46810 * 240.00758 * 2 1 3 29 29 H 1.08998 * 109.47226 * 120.00300 * 2 1 3 30 30 H 1.09001 * 109.46614 * 60.00286 * 3 2 1 31 31 H 1.08995 * 109.47017 * 299.99942 * 3 2 1 32 32 H 1.08998 * 109.47226 * 300.00300 * 4 3 2 33 33 H 1.09004 * 109.46679 * 60.00341 * 4 3 2 34 34 H 0.96998 * 120.00139 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.45916 * 61.43000 * 10 8 7 36 36 H 1.09000 * 109.45847 * 181.38924 * 10 8 7 37 37 H 1.09001 * 109.49906 * 178.68123 * 11 10 8 38 38 H 1.09005 * 109.49875 * 58.58782 * 11 10 8 39 39 H 1.09001 * 109.58403 * 294.85472 * 12 11 10 40 40 H 1.08991 * 109.58878 * 174.42106 * 12 11 10 41 41 H 0.96998 * 119.99906 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.47152 * 300.71311 * 24 22 13 43 43 H 1.09001 * 109.46583 * 60.71152 * 24 22 13 44 44 H 1.08999 * 109.46871 * 180.70721 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0722 2.8634 0.0013 6 8 3.2841 3.7852 0.0017 7 7 5.3973 3.1097 0.0014 8 6 5.8856 4.4909 0.0026 9 1 5.2127 5.1142 0.5915 10 6 5.9410 5.0143 -1.4346 11 6 6.8598 4.1198 -2.2699 12 6 8.2753 4.1609 -1.6855 13 7 8.2103 3.7983 -0.2631 14 6 8.9921 2.7913 0.2366 15 1 8.6541 2.2157 1.0856 16 6 10.2194 2.5103 -0.3481 17 7 10.7682 3.3754 -1.1744 18 14 11.0920 0.9044 0.0379 19 1 10.2714 0.1109 0.9877 20 1 11.2836 0.1314 -1.2156 21 1 12.4146 1.1938 0.6480 22 6 7.2900 4.5363 0.6128 23 1 7.6172 5.5724 0.7001 24 6 7.2686 3.8868 1.9979 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9289 0.8908 33 1 3.9336 0.9286 -0.8892 34 1 6.0276 2.3725 0.0014 35 1 4.9387 5.0062 -1.8629 36 1 6.3278 6.0334 -1.4352 37 1 6.8804 4.4792 -3.2987 38 1 6.4873 3.0955 -2.2493 39 1 8.6838 5.1662 -1.7879 40 1 8.9100 3.4505 -2.2150 41 1 11.6259 3.1792 -1.5826 42 1 6.9460 2.8495 1.9079 43 1 8.2686 3.9201 2.4303 44 1 6.5759 4.4281 2.6423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571515095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:54 Heat of formation + Delta-G solvation = -59.916479 kcal Electronic energy + Delta-G solvation = -21788.551462 eV Core-core repulsion = 18739.656793 eV Total energy + Delta-G solvation = -3048.894670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10904 -39.22345 -36.23279 -35.51831 -34.00505 -33.38891 -31.74361 -30.60637 -27.90080 -26.85197 -25.57226 -23.64783 -22.39269 -22.05790 -21.24747 -20.24679 -18.24956 -17.97725 -17.07609 -16.88284 -16.46659 -15.86867 -15.65066 -15.26127 -15.01429 -14.76891 -14.52179 -14.41844 -14.23398 -13.63345 -13.54237 -13.17455 -12.94917 -12.88117 -12.71870 -12.42830 -12.30657 -12.19157 -12.15833 -12.01542 -11.88318 -11.81384 -11.66701 -11.42014 -11.34859 -11.02409 -10.70025 -10.49314 -9.84573 -8.60511 -7.80057 -5.26839 1.50135 1.53653 1.61797 1.80065 2.43008 2.55599 3.36440 3.60078 3.85905 4.00253 4.05325 4.07103 4.11856 4.22135 4.39306 4.43181 4.50606 4.58298 4.67126 4.69701 4.75904 4.85917 4.95319 4.97980 5.00411 5.02299 5.06979 5.14643 5.14957 5.24261 5.31544 5.35400 5.42445 5.46835 5.53246 5.57131 5.71034 5.76441 5.82171 6.45681 6.77720 7.20791 7.41798 7.90821 8.44245 9.26715 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.005204 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.706391 B = 5379.539014 C = 6050.574344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.136 4.136 5 C 0.505 3.495 6 O -0.591 6.591 7 N -0.701 5.701 8 C 0.143 3.857 9 H 0.075 0.925 10 C -0.115 4.115 11 C -0.125 4.125 12 C 0.179 3.821 13 N -0.596 5.596 14 C -0.246 4.246 15 H 0.083 0.917 16 C -0.051 4.051 17 N -0.938 5.938 18 Si 0.960 3.040 19 H -0.260 1.260 20 H -0.296 1.296 21 H -0.302 1.302 22 C 0.156 3.844 23 H 0.027 0.973 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.409 0.591 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.055 0.945 39 H -0.008 1.008 40 H 0.057 0.943 41 H 0.246 0.754 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.571 -5.718 2.277 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.136 4.136 4 C -0.176 4.176 5 C 0.294 3.706 6 O -0.473 6.473 7 N -0.351 5.351 8 C 0.036 3.964 9 H 0.093 0.907 10 C -0.154 4.154 11 C -0.164 4.164 12 C 0.053 3.947 13 N -0.320 5.320 14 C -0.376 4.376 15 H 0.100 0.900 16 C -0.246 4.246 17 N -0.584 5.584 18 Si 0.789 3.211 19 H -0.184 1.184 20 H -0.223 1.223 21 H -0.229 1.229 22 C 0.050 3.950 23 H 0.044 0.956 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.245 0.755 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.010 0.990 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.963 -5.088 2.231 15.961 hybrid contribution 1.420 -0.511 -0.177 1.520 sum -13.543 -5.599 2.053 14.798 Atomic orbital electron populations 1.21774 0.95523 1.02069 1.01691 1.21533 0.96260 0.95280 1.02806 1.21295 0.92765 0.97508 1.02018 1.21737 0.97859 0.92027 1.05928 1.21321 0.81886 0.92657 0.74756 1.90629 1.56201 1.48027 1.52439 1.46026 1.06848 1.08985 1.73256 1.21256 0.95552 0.83360 0.96267 0.90704 1.21712 0.98821 0.99117 0.95718 1.21944 0.96822 0.99389 0.98235 1.20590 0.92818 0.96692 0.84600 1.44354 1.45198 1.38776 1.03691 1.19560 0.96557 1.07268 1.14174 0.89995 1.25787 0.97099 1.00784 1.00921 1.70190 1.17480 1.35405 1.35375 0.85310 0.78060 0.80496 0.77199 1.18415 1.22329 1.22926 1.20835 0.88326 0.94676 0.91187 0.95564 1.21696 1.01008 1.00807 0.94928 0.93090 0.91692 0.92944 0.91277 0.91055 0.92663 0.92940 0.87170 0.87598 0.75480 0.92808 0.91871 0.92170 0.92646 0.99010 0.92425 0.94513 0.92193 0.93456 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.91 5.93 30.60 0.18 -1.73 16 3 C -0.10 -2.06 4.50 30.60 0.14 -1.92 16 4 C -0.14 -2.91 5.70 29.85 0.17 -2.74 16 5 C 0.51 15.16 7.80 87.66 0.68 15.84 16 6 O -0.59 -21.81 15.64 -3.02 -0.05 -21.86 16 7 N -0.70 -21.79 3.47 -442.15 -1.53 -23.32 16 8 C 0.14 4.90 2.33 45.07 0.10 5.01 16 9 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 10 C -0.12 -3.99 5.58 30.62 0.17 -3.82 16 11 C -0.12 -4.63 5.93 30.67 0.18 -4.45 16 12 C 0.18 8.23 5.29 86.36 0.46 8.69 16 13 N -0.60 -27.09 2.65 -675.22 -1.79 -28.88 16 14 C -0.25 -12.04 8.61 84.04 0.72 -11.31 16 15 H 0.08 3.79 6.20 -2.91 -0.02 3.77 16 16 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 17 N -0.94 -53.33 11.14 21.65 0.24 -53.09 16 18 Si 0.96 42.38 29.58 68.60 2.03 44.41 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 22 C 0.16 6.01 3.20 44.98 0.14 6.16 16 23 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 24 C -0.13 -4.34 7.72 71.98 0.56 -3.78 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 31 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 32 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.41 12.78 7.77 -92.71 -0.72 12.06 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 2.03 7.53 -2.38 -0.02 2.01 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.06 3.02 6.06 -2.39 -0.01 3.00 16 41 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.06 1.97 6.38 -2.39 -0.02 1.95 16 43 H 0.05 1.76 7.66 -2.39 -0.02 1.74 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -60.63 340.78 3.78 -56.85 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.24 Total: 23.73 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 4.64 Total: 2.16 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -3.08 Total: -105.29 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.63 3.78 -56.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571515095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.069 kcal (2) G-P(sol) polarization free energy of solvation -60.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds