Wall clock time and date at job start Mon Mar 30 2020 00:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46802 * 2 1 4 4 C 1.52995 * 109.46889 * 240.00479 * 2 1 3 5 5 C 1.50694 * 109.47368 * 119.99980 * 2 1 3 6 6 O 1.21285 * 119.99851 * 0.02562 * 5 2 1 7 7 N 1.34782 * 120.00112 * 179.97438 * 5 2 1 8 8 C 1.46494 * 120.00130 * 180.02562 * 7 5 2 9 9 H 1.09004 * 110.43294 * 32.46255 * 8 7 5 10 10 C 1.54886 * 110.60115 * 269.84297 * 8 7 5 11 11 C 1.54888 * 102.74990 * 203.32254 * 10 8 7 12 12 C 1.54263 * 104.19468 * 37.94289 * 11 10 8 13 13 H 1.09000 * 110.07423 * 95.69747 * 12 11 10 14 14 C 1.53004 * 110.03071 * 217.10320 * 12 11 10 15 15 N 1.46499 * 109.47198 * 292.16683 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.53875 * 106.59814 * 336.38813 * 12 11 10 25 25 H 1.09006 * 109.47183 * 299.99767 * 1 2 3 26 26 H 1.08997 * 109.47756 * 59.99511 * 1 2 3 27 27 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47496 * 300.00205 * 3 2 1 30 30 H 1.08999 * 109.47371 * 60.00355 * 3 2 1 31 31 H 1.08999 * 109.47414 * 299.99555 * 4 2 1 32 32 H 1.08999 * 109.47653 * 59.99492 * 4 2 1 33 33 H 1.09006 * 109.47362 * 179.97438 * 4 2 1 34 34 H 0.97003 * 119.99747 * 0.02562 * 7 5 2 35 35 H 1.08997 * 110.75662 * 321.63737 * 10 8 7 36 36 H 1.09002 * 110.75777 * 84.82453 * 10 8 7 37 37 H 1.08996 * 110.49187 * 279.26294 * 11 10 8 38 38 H 1.09001 * 110.48597 * 156.61901 * 11 10 8 39 39 H 1.09009 * 109.46730 * 172.16470 * 14 12 11 40 40 H 1.08998 * 109.46846 * 52.17015 * 14 12 11 41 41 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.03045 * 119.28883 * 24 12 11 44 44 H 1.08998 * 110.02996 * 240.66730 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2442 -1.1717 2.0285 7 7 3.3575 -0.8339 1.4434 8 6 3.8459 -1.5250 2.6392 9 1 3.1600 -2.3227 2.9245 10 6 4.0318 -0.5261 3.8082 11 6 5.0682 -1.2429 4.7088 12 6 6.0376 -1.9110 3.7121 13 1 6.9055 -1.2722 3.5490 14 6 6.4832 -3.2733 4.2475 15 7 7.3218 -3.0813 5.4333 16 6 7.8447 -4.1662 6.0850 17 1 7.6353 -5.1636 5.7274 18 6 8.6441 -3.9842 7.2051 19 7 8.8990 -2.7687 7.6412 20 14 9.3568 -5.4642 8.0945 21 1 10.2171 -6.2354 7.1615 22 1 10.1677 -5.0039 9.2502 23 1 8.2518 -6.3299 8.5792 24 6 5.2604 -2.0904 2.3962 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.9878 -0.4653 0.8048 35 1 4.4260 0.4234 3.4460 36 1 3.0925 -0.3749 4.3403 37 1 4.5798 -1.9950 5.3284 38 1 5.5978 -0.5207 5.3302 39 1 7.0536 -3.7965 3.4799 40 1 5.6064 -3.8633 4.5142 41 1 7.5102 -2.1855 5.7542 42 1 9.4573 -2.6415 8.4241 43 1 5.7508 -1.5379 1.5946 44 1 5.2015 -3.1479 2.1386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571547764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:59 Heat of formation + Delta-G solvation = -58.466002 kcal Electronic energy + Delta-G solvation = -20800.689490 eV Core-core repulsion = 17751.857718 eV Total energy + Delta-G solvation = -3048.831772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40201 -38.26335 -35.80162 -34.81523 -33.30292 -31.00612 -28.76137 -27.92645 -27.71006 -27.19875 -24.50079 -23.05159 -22.13796 -20.50269 -19.72305 -19.25112 -17.00395 -16.93207 -16.49950 -15.30003 -14.96340 -14.86316 -14.29604 -14.18097 -13.90531 -13.58811 -13.29609 -13.18080 -12.74649 -12.69138 -12.56326 -12.30466 -12.05685 -12.04404 -11.66808 -11.42141 -11.27497 -11.22874 -11.02770 -10.81768 -10.67260 -10.58966 -10.31487 -10.14175 -9.90924 -9.73210 -9.61529 -9.01788 -8.82481 -6.87442 -5.73004 -3.01056 2.56710 3.08508 3.46499 3.50585 3.51790 4.33805 4.43498 4.54312 4.61751 4.72696 4.84761 4.95621 5.08968 5.18682 5.26648 5.35671 5.47793 5.53834 5.55316 5.57911 5.59570 5.62705 5.65952 5.69205 5.77373 5.86822 5.90750 5.95741 6.00831 6.14813 6.22877 6.30508 6.33658 6.53212 6.60241 6.68677 6.84536 6.97838 7.44047 7.72830 8.16988 8.46494 9.57358 10.16497 10.51312 11.50030 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.050293 B = 0.003049 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.604847 B = 9182.203250 C = 9247.800797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.520 3.480 6 O -0.539 6.539 7 N -0.720 5.720 8 C 0.138 3.862 9 H 0.094 0.906 10 C -0.133 4.133 11 C -0.110 4.110 12 C -0.096 4.096 13 H 0.073 0.927 14 C 0.159 3.841 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.120 4.120 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.397 0.603 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.016 0.984 40 H 0.020 0.980 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.065 0.935 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 8.852 -18.937 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.306 3.694 6 O -0.416 6.416 7 N -0.371 5.371 8 C 0.034 3.966 9 H 0.112 0.888 10 C -0.171 4.171 11 C -0.148 4.148 12 C -0.115 4.115 13 H 0.092 0.908 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.159 4.159 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.034 0.966 40 H 0.037 0.963 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.074 8.332 -18.303 24.546 hybrid contribution 0.915 -0.332 0.361 1.038 sum -13.158 8.001 -17.942 23.644 Atomic orbital electron populations 1.21654 0.92020 1.02850 1.01952 1.20831 0.98076 0.96436 0.93809 1.21863 1.01229 0.93803 1.02876 1.21865 1.01230 1.00681 0.96005 1.20565 0.82375 0.79357 0.87079 1.90701 1.55358 1.48387 1.47135 1.46148 1.06939 1.58601 1.25420 1.21947 0.95613 0.94858 0.84226 0.88794 1.22877 0.99644 0.98172 0.96432 1.22312 0.95828 0.99549 0.97153 1.21882 0.97728 0.98530 0.93356 0.90805 1.20797 0.93521 0.92868 0.89670 1.42350 1.58654 1.06740 1.29862 1.19202 1.23483 0.87553 1.06733 0.91315 1.24733 1.01018 0.96450 0.98890 1.69653 1.42713 1.19337 1.26666 0.86265 0.78781 0.81978 0.79160 1.21323 1.21706 1.21292 1.22398 0.93728 1.01508 0.98276 0.91926 0.92153 0.91939 0.92105 0.91410 0.91988 0.91995 0.91412 0.92099 0.76826 0.91669 0.91583 0.90886 0.91253 0.96594 0.96262 0.78261 0.93519 0.91663 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 7.76 37.16 0.29 -0.79 16 2 C -0.09 -0.73 0.87 -155.67 -0.14 -0.86 16 3 C -0.14 -0.91 8.37 37.16 0.31 -0.60 16 4 C -0.14 -0.90 8.37 37.16 0.31 -0.59 16 5 C 0.52 6.10 6.48 -10.99 -0.07 6.03 16 6 O -0.54 -8.64 15.63 5.55 0.09 -8.55 16 7 N -0.72 -7.45 4.95 -52.21 -0.26 -7.71 16 8 C 0.14 1.74 3.22 -66.28 -0.21 1.53 16 9 H 0.09 1.39 7.55 -51.93 -0.39 0.99 16 10 C -0.13 -1.77 6.58 -24.74 -0.16 -1.93 16 11 C -0.11 -1.75 6.08 -25.07 -0.15 -1.90 16 12 C -0.10 -1.52 2.96 -89.50 -0.26 -1.79 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.16 3.23 5.31 -4.04 -0.02 3.21 16 15 N -0.73 -18.79 5.45 -59.90 -0.33 -19.12 16 16 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 20 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C -0.12 -1.50 6.19 -25.62 -0.16 -1.66 16 25 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 34 H 0.40 3.07 7.20 -40.82 -0.29 2.77 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 41 H 0.38 10.29 7.55 -40.82 -0.31 9.98 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.06 0.68 7.73 -51.93 -0.40 0.28 16 44 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -32.80 350.01 -8.05 -40.86 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.01 Total: 6.28 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.52 Total: -6.84 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.14 Total: -54.73 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.80 -8.05 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571547764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.611 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds