Wall clock time and date at job start Mon Mar 30 2020 00:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46802 * 2 1 4 4 C 1.52995 * 109.46889 * 240.00479 * 2 1 3 5 5 C 1.50694 * 109.47368 * 119.99980 * 2 1 3 6 6 O 1.21285 * 119.99851 * 0.02562 * 5 2 1 7 7 N 1.34782 * 120.00112 * 179.97438 * 5 2 1 8 8 C 1.46494 * 120.00130 * 180.02562 * 7 5 2 9 9 H 1.09004 * 110.43294 * 32.46255 * 8 7 5 10 10 C 1.54886 * 110.60115 * 269.84297 * 8 7 5 11 11 C 1.54888 * 102.74990 * 203.32254 * 10 8 7 12 12 C 1.54263 * 104.19468 * 37.94289 * 11 10 8 13 13 H 1.09000 * 110.07423 * 95.69747 * 12 11 10 14 14 C 1.53004 * 110.03071 * 217.10320 * 12 11 10 15 15 N 1.46499 * 109.47198 * 292.16683 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.53875 * 106.59814 * 336.38813 * 12 11 10 25 25 H 1.09006 * 109.47183 * 299.99767 * 1 2 3 26 26 H 1.08997 * 109.47756 * 59.99511 * 1 2 3 27 27 H 1.09002 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47496 * 300.00205 * 3 2 1 30 30 H 1.08999 * 109.47371 * 60.00355 * 3 2 1 31 31 H 1.08999 * 109.47414 * 299.99555 * 4 2 1 32 32 H 1.08999 * 109.47653 * 59.99492 * 4 2 1 33 33 H 1.09006 * 109.47362 * 179.97438 * 4 2 1 34 34 H 0.97003 * 119.99747 * 0.02562 * 7 5 2 35 35 H 1.08997 * 110.75662 * 321.63737 * 10 8 7 36 36 H 1.09002 * 110.75777 * 84.82453 * 10 8 7 37 37 H 1.08996 * 110.49187 * 279.26294 * 11 10 8 38 38 H 1.09001 * 110.48597 * 156.61901 * 11 10 8 39 39 H 1.09009 * 109.46730 * 172.16470 * 14 12 11 40 40 H 1.08998 * 109.46846 * 52.17015 * 14 12 11 41 41 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.03045 * 119.28883 * 24 12 11 44 44 H 1.08998 * 110.02996 * 240.66730 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2442 -1.1717 2.0285 7 7 3.3575 -0.8339 1.4434 8 6 3.8459 -1.5250 2.6392 9 1 3.1600 -2.3227 2.9245 10 6 4.0318 -0.5261 3.8082 11 6 5.0682 -1.2429 4.7088 12 6 6.0376 -1.9110 3.7121 13 1 6.9055 -1.2722 3.5490 14 6 6.4832 -3.2733 4.2475 15 7 7.3218 -3.0813 5.4333 16 6 7.8447 -4.1662 6.0850 17 1 7.6353 -5.1636 5.7274 18 6 8.6441 -3.9842 7.2051 19 7 8.8990 -2.7687 7.6412 20 14 9.3568 -5.4642 8.0945 21 1 10.2171 -6.2354 7.1615 22 1 10.1677 -5.0039 9.2502 23 1 8.2518 -6.3299 8.5792 24 6 5.2604 -2.0904 2.3962 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 3.9878 -0.4653 0.8048 35 1 4.4260 0.4234 3.4460 36 1 3.0925 -0.3749 4.3403 37 1 4.5798 -1.9950 5.3284 38 1 5.5978 -0.5207 5.3302 39 1 7.0536 -3.7965 3.4799 40 1 5.6064 -3.8633 4.5142 41 1 7.5102 -2.1855 5.7542 42 1 9.4573 -2.6415 8.4241 43 1 5.7508 -1.5379 1.5946 44 1 5.2015 -3.1479 2.1386 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571547764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:58 Heat of formation + Delta-G solvation = -79.949908 kcal Electronic energy + Delta-G solvation = -20801.621102 eV Core-core repulsion = 17751.857718 eV Total energy + Delta-G solvation = -3049.763384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33539 -39.45378 -36.63911 -36.40883 -34.73612 -32.87253 -30.16042 -29.11465 -28.18365 -27.93868 -26.26248 -24.07600 -23.84258 -21.59503 -20.91748 -20.27864 -19.05829 -17.75699 -17.52490 -16.73586 -16.22224 -15.94735 -15.79032 -15.19668 -15.07163 -14.78974 -14.65362 -14.51068 -14.15056 -13.57755 -13.27151 -13.25337 -13.04577 -12.95249 -12.78611 -12.74259 -12.60198 -12.45496 -12.20437 -12.11813 -11.88537 -11.84583 -11.75375 -11.73848 -11.56895 -11.36034 -10.90949 -10.64592 -10.01834 -8.99037 -7.95381 -5.23789 1.46270 1.49610 1.55725 1.66297 2.20422 2.56053 3.37668 3.54738 3.59919 3.69852 3.85905 3.89941 3.96475 4.15904 4.28069 4.42388 4.48517 4.50275 4.61016 4.67794 4.73257 4.75576 4.75692 4.85120 4.90726 4.97035 4.97380 5.03070 5.04408 5.08739 5.12845 5.22817 5.28182 5.36683 5.36937 5.38210 5.47412 5.54124 5.60963 6.27425 6.60286 7.30293 7.33545 8.10762 8.34346 9.28103 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.050293 B = 0.003049 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.604847 B = 9182.203250 C = 9247.800797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.590 6.590 7 N -0.706 5.706 8 C 0.144 3.856 9 H 0.069 0.931 10 C -0.121 4.121 11 C -0.109 4.109 12 C -0.087 4.087 13 H 0.075 0.925 14 C 0.157 3.843 15 N -0.744 5.744 16 C -0.248 4.248 17 H 0.073 0.927 18 C -0.076 4.076 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.280 1.280 24 C -0.107 4.107 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.022 0.978 40 H 0.013 0.987 41 H 0.375 0.625 42 H 0.252 0.748 43 H 0.098 0.902 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.247 9.313 -21.394 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.302 3.698 6 O -0.470 6.470 7 N -0.358 5.358 8 C 0.039 3.961 9 H 0.087 0.913 10 C -0.159 4.159 11 C -0.148 4.148 12 C -0.106 4.106 13 H 0.094 0.906 14 C 0.030 3.970 15 N -0.387 5.387 16 C -0.380 4.380 17 H 0.091 0.909 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.206 1.206 24 C -0.146 4.146 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.031 0.969 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.117 0.883 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.769 8.790 -20.822 26.465 hybrid contribution 0.764 -0.482 1.104 1.427 sum -13.005 8.307 -19.718 25.038 Atomic orbital electron populations 1.21673 0.92551 1.01916 1.02392 1.20869 0.97672 0.97396 0.92687 1.21884 1.02093 0.92229 1.03336 1.21885 1.02123 0.99942 0.95588 1.21326 0.82191 0.78627 0.87621 1.90684 1.56619 1.50560 1.49108 1.45973 1.07051 1.57893 1.24838 1.21661 0.95300 0.94177 0.84950 0.91273 1.22767 0.98234 0.98892 0.96054 1.22222 0.96342 0.98906 0.97291 1.21778 0.98114 0.95837 0.94892 0.90628 1.20979 0.92387 0.95588 0.88024 1.42559 1.59204 1.05686 1.31247 1.19617 1.22997 0.88521 1.06884 0.90895 1.25573 1.02014 0.99218 1.00009 1.69811 1.43712 1.21364 1.27127 0.85207 0.78031 0.78723 0.77777 1.20226 1.21990 1.20598 1.22287 0.92967 1.02256 0.97063 0.93663 0.89472 0.93603 0.90738 0.89262 0.93276 0.93202 0.89280 0.90690 0.74756 0.89712 0.92770 0.93385 0.92320 0.96057 0.96899 0.79324 0.93965 0.88339 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 7.76 71.98 0.56 -1.48 16 2 C -0.08 -1.19 0.87 -52.93 -0.05 -1.24 16 3 C -0.14 -1.37 8.37 71.98 0.60 -0.77 16 4 C -0.14 -1.34 8.37 71.98 0.60 -0.74 16 5 C 0.51 11.56 6.48 87.65 0.57 12.13 16 6 O -0.59 -19.27 15.63 -3.05 -0.05 -19.32 16 7 N -0.71 -13.13 4.95 -437.47 -2.17 -15.29 16 8 C 0.14 3.49 3.22 46.06 0.15 3.64 16 9 H 0.07 2.06 7.55 -2.38 -0.02 2.04 16 10 C -0.12 -3.15 6.58 31.88 0.21 -2.94 16 11 C -0.11 -3.50 6.08 31.67 0.19 -3.31 16 12 C -0.09 -2.70 2.96 -10.07 -0.03 -2.72 16 13 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.16 6.34 5.31 86.38 0.46 6.80 16 15 N -0.74 -38.68 5.45 -343.44 -1.87 -40.55 16 16 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 19 N -0.97 -60.21 13.06 21.65 0.28 -59.93 16 20 Si 0.97 46.91 29.55 68.60 2.03 48.93 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 24 C -0.11 -2.44 6.19 31.32 0.19 -2.24 16 25 H 0.04 0.86 8.10 -2.38 -0.02 0.84 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.04 0.87 8.10 -2.39 -0.02 0.85 16 28 H 0.07 0.55 7.56 -2.39 -0.02 0.53 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.52 7.56 -2.38 -0.02 0.51 16 34 H 0.41 4.87 7.20 -92.71 -0.67 4.20 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.76 7.76 -2.39 -0.02 1.74 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.01 0.55 8.00 -2.39 -0.02 0.53 16 41 H 0.37 20.54 7.55 -92.71 -0.70 19.84 16 42 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.10 1.64 7.73 -2.38 -0.02 1.62 16 44 H 0.07 1.73 7.67 -2.39 -0.02 1.71 16 Total: -1.00 -72.44 350.01 2.59 -69.85 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.40 Total: 26.58 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 4.77 Total: -10.26 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.75 Total: -115.78 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -72.44 2.59 -69.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571547764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.102 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds