Wall clock time and date at job start Mon Mar 30 2020 00:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 C 1.53001 * 109.46694 * 119.99889 * 2 1 3 5 5 H 1.09001 * 115.55738 * 274.30805 * 4 2 1 6 6 C 1.52993 * 117.49884 * 128.62690 * 4 2 1 7 7 C 1.52998 * 117.50196 * 59.99898 * 4 2 1 8 8 H 1.09000 * 117.51696 * 0.02562 * 7 4 2 9 9 C 1.52999 * 117.50169 * 214.97928 * 7 4 2 10 10 N 1.46497 * 109.46992 * 174.98673 * 9 7 4 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 H 1.09003 * 109.47353 * 320.27278 * 13 11 10 15 15 N 1.46901 * 109.47063 * 200.27767 * 13 11 10 16 16 C 1.53003 * 109.47432 * 80.27730 * 13 11 10 17 17 C 1.52996 * 109.47202 * 184.99824 * 16 13 11 18 18 C 1.50696 * 109.47057 * 180.02562 * 17 16 13 19 19 H 1.08004 * 120.00067 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00375 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99722 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00539 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46984 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47334 * 119.99722 * 22 20 18 25 25 H 1.48505 * 109.47216 * 240.00020 * 22 20 18 26 26 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47280 * 300.00286 * 1 2 3 28 28 H 1.09008 * 109.46831 * 60.00387 * 1 2 3 29 29 H 1.08998 * 109.47280 * 239.99714 * 2 1 3 30 30 H 1.09010 * 109.46905 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46753 * 299.99176 * 3 2 1 32 32 H 1.08998 * 109.47343 * 59.99753 * 3 2 1 33 33 H 1.09000 * 117.50575 * 145.02255 * 6 4 2 34 34 H 1.09003 * 117.49947 * 359.97438 * 6 4 2 35 35 H 1.08995 * 109.46838 * 54.98561 * 9 7 4 36 36 H 1.09001 * 109.46617 * 294.98896 * 9 7 4 37 37 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 38 38 H 1.00895 * 110.99940 * 299.99965 * 15 13 11 39 39 H 1.00907 * 111.00198 * 63.95463 * 15 13 11 40 40 H 1.08993 * 109.46630 * 305.00221 * 16 13 11 41 41 H 1.09001 * 109.46418 * 64.99919 * 16 13 11 42 42 H 1.09002 * 109.47174 * 300.00121 * 17 16 13 43 43 H 1.08999 * 109.47082 * 59.99947 * 17 16 13 44 44 H 0.96999 * 119.99800 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1270 -0.1060 2.1449 6 6 3.0740 -1.8313 1.0515 7 6 1.6356 -2.1852 1.4344 8 1 1.0066 -2.6349 0.6661 9 6 1.3844 -2.6736 2.8624 10 7 0.8956 -4.0542 2.8274 11 6 0.6057 -4.6957 3.9767 12 8 0.7490 -4.1299 5.0399 13 6 0.0971 -6.1138 3.9404 14 1 -0.6006 -6.2285 3.1108 15 7 -0.5888 -6.4204 5.2028 16 6 1.2741 -7.0733 3.7534 17 6 0.7478 -8.5007 3.5918 18 6 1.9071 -9.4458 3.4082 19 1 2.9183 -9.0662 3.4065 20 6 1.6771 -10.7949 3.2413 21 7 0.4458 -11.2571 3.2428 22 14 3.1142 -11.9663 3.0131 23 1 4.3867 -11.2016 3.0489 24 1 3.1103 -12.9732 4.1046 25 1 2.9880 -12.6554 1.7036 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.8414 -1.9465 1.8170 34 1 3.3909 -2.0480 0.0313 35 1 0.6393 -2.0363 3.3385 36 1 2.3143 -2.6316 3.4296 37 1 0.7813 -4.5069 1.9772 38 1 0.0372 -6.3213 5.9878 39 1 -1.4083 -5.8432 5.3186 40 1 1.8357 -6.7900 2.8633 41 1 1.9259 -7.0229 4.6256 42 1 0.1861 -8.7839 4.4820 43 1 0.0959 -8.5510 2.7196 44 1 0.2839 -12.2063 3.1250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575828698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:38 Heat of formation + Delta-G solvation = -49.039274 kcal Electronic energy + Delta-G solvation = -20128.654531 eV Core-core repulsion = 17080.231532 eV Total energy + Delta-G solvation = -3048.422999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.85875 -38.75925 -35.33587 -34.85479 -33.26459 -32.77706 -30.08413 -27.91240 -27.45612 -25.80511 -23.40710 -23.17616 -21.22059 -20.73691 -20.14343 -19.54167 -17.14062 -16.43602 -16.13487 -15.58150 -15.19281 -15.10999 -14.84594 -14.38169 -14.06803 -13.81107 -13.47599 -13.34784 -13.31506 -12.63843 -12.49073 -12.30722 -12.00169 -11.68045 -11.62553 -11.51736 -11.43166 -10.98999 -10.90577 -10.67398 -10.51738 -10.31650 -10.26564 -10.02521 -9.78524 -9.35901 -9.00530 -8.96068 -8.33771 -8.18781 -5.93153 -3.95134 2.80937 3.17608 3.34311 3.41874 3.45815 3.54137 4.21257 4.47446 4.50764 4.55571 4.71385 4.86982 4.93617 4.96737 5.04304 5.16687 5.25747 5.32587 5.42416 5.45704 5.52558 5.53130 5.58022 5.59254 5.60892 5.73110 5.83666 5.86089 5.91411 5.96781 6.08233 6.44008 6.50576 6.67607 7.10559 7.40433 7.63331 7.77521 7.82193 7.97492 8.14260 8.35096 8.49607 9.13187 9.68032 11.17822 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.003131 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.351599 B = 8941.613906 C = 9617.105672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.136 4.136 5 H 0.105 0.895 6 C -0.170 4.170 7 C -0.163 4.163 8 H 0.111 0.889 9 C 0.150 3.850 10 N -0.728 5.728 11 C 0.482 3.518 12 O -0.556 6.556 13 C 0.078 3.922 14 H 0.098 0.902 15 N -0.807 5.807 16 C -0.095 4.095 17 C 0.031 3.969 18 C -0.521 4.521 19 H 0.052 0.948 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.889 3.111 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.403 0.597 38 H 0.348 0.652 39 H 0.333 0.667 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.013 0.987 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 23.189 -6.963 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.202 4.202 4 C -0.155 4.155 5 H 0.123 0.877 6 C -0.207 4.207 7 C -0.181 4.181 8 H 0.129 0.871 9 C 0.026 3.974 10 N -0.381 5.381 11 C 0.268 3.732 12 O -0.434 6.434 13 C -0.038 4.038 14 H 0.115 0.885 15 N -0.335 5.335 16 C -0.133 4.133 17 C -0.007 4.007 18 C -0.559 4.559 19 H 0.071 0.929 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.238 0.762 38 H 0.162 0.838 39 H 0.145 0.855 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.484 22.692 -6.493 23.608 hybrid contribution 0.979 0.116 -0.348 1.046 sum 1.463 22.808 -6.841 23.857 Atomic orbital electron populations 1.21826 0.94867 1.02023 1.01654 1.20717 0.95775 0.95965 0.96049 1.21807 1.01102 0.95541 1.01740 1.22472 1.03067 0.90114 0.99859 0.87657 1.23245 0.92071 1.02483 1.02921 1.22539 0.99211 0.98714 0.97665 0.87110 1.20820 0.99514 0.82890 0.94185 1.46153 1.67935 1.14298 1.09683 1.22755 0.76557 0.90456 0.83427 1.90641 1.53839 1.68838 1.30119 1.21837 0.98646 0.88134 0.95141 0.88457 1.59005 1.10665 1.60121 1.03684 1.21651 0.93830 0.97447 1.00397 1.19022 0.96052 0.87586 0.97991 1.21320 0.93191 0.92259 1.49164 0.92945 1.24999 0.95436 0.98363 0.95603 1.69990 1.18961 1.13758 1.50514 0.86596 0.82945 0.81155 0.77629 1.19859 1.21054 1.21116 0.92479 0.92589 0.92778 0.91141 0.92574 0.92671 0.92626 0.88561 0.88560 0.91559 0.91661 0.76213 0.83846 0.85493 0.92834 0.92882 0.94665 0.96875 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.03 37.16 0.34 -0.65 16 2 C -0.07 -0.45 3.07 -90.62 -0.28 -0.73 16 3 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16 4 C -0.14 -1.04 4.87 -90.62 -0.44 -1.48 16 5 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 6 C -0.17 -1.38 9.82 -26.73 -0.26 -1.64 16 7 C -0.16 -1.40 5.05 -90.62 -0.46 -1.86 16 8 H 0.11 0.90 7.50 -51.93 -0.39 0.51 16 9 C 0.15 1.68 5.96 -4.04 -0.02 1.65 16 10 N -0.73 -9.17 5.56 -60.30 -0.33 -9.51 16 11 C 0.48 7.71 7.07 -10.98 -0.08 7.63 16 12 O -0.56 -10.48 16.25 5.55 0.09 -10.39 16 13 C 0.08 1.33 3.15 -68.86 -0.22 1.11 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 N -0.81 -13.83 8.44 -5.65 -0.05 -13.87 16 16 C -0.09 -1.93 4.78 -26.73 -0.13 -2.06 16 17 C 0.03 0.78 4.86 -27.89 -0.14 0.65 16 18 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 19 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H 0.06 0.40 7.29 -51.93 -0.38 0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.07 0.48 7.90 -51.93 -0.41 0.07 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 34 H 0.10 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 37 H 0.40 4.32 8.40 -40.82 -0.34 3.98 16 38 H 0.35 6.06 8.58 -39.29 -0.34 5.72 16 39 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 43 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -32.23 361.82 -8.93 -41.16 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.05 Total: 8.13 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.76 Total: -11.47 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.35 Total: -49.68 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.23 -8.93 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575828698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.880 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds