Wall clock time and date at job start Mon Mar 30 2020 00:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 C 1.53001 * 109.46694 * 119.99889 * 2 1 3 5 5 H 1.09001 * 115.55738 * 274.30805 * 4 2 1 6 6 C 1.52993 * 117.49884 * 128.62690 * 4 2 1 7 7 C 1.52998 * 117.50196 * 59.99898 * 4 2 1 8 8 H 1.09000 * 117.51696 * 0.02562 * 7 4 2 9 9 C 1.52999 * 117.50169 * 214.97928 * 7 4 2 10 10 N 1.46497 * 109.46992 * 174.98673 * 9 7 4 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 H 1.09003 * 109.47353 * 320.27278 * 13 11 10 15 15 N 1.46901 * 109.47063 * 200.27767 * 13 11 10 16 16 C 1.53003 * 109.47432 * 80.27730 * 13 11 10 17 17 C 1.52996 * 109.47202 * 184.99824 * 16 13 11 18 18 C 1.50696 * 109.47057 * 180.02562 * 17 16 13 19 19 H 1.08004 * 120.00067 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00375 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99722 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00539 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46984 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47334 * 119.99722 * 22 20 18 25 25 H 1.48505 * 109.47216 * 240.00020 * 22 20 18 26 26 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47280 * 300.00286 * 1 2 3 28 28 H 1.09008 * 109.46831 * 60.00387 * 1 2 3 29 29 H 1.08998 * 109.47280 * 239.99714 * 2 1 3 30 30 H 1.09010 * 109.46905 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46753 * 299.99176 * 3 2 1 32 32 H 1.08998 * 109.47343 * 59.99753 * 3 2 1 33 33 H 1.09000 * 117.50575 * 145.02255 * 6 4 2 34 34 H 1.09003 * 117.49947 * 359.97438 * 6 4 2 35 35 H 1.08995 * 109.46838 * 54.98561 * 9 7 4 36 36 H 1.09001 * 109.46617 * 294.98896 * 9 7 4 37 37 H 0.97000 * 120.00580 * 0.02562 * 10 9 7 38 38 H 1.00895 * 110.99940 * 299.99965 * 15 13 11 39 39 H 1.00907 * 111.00198 * 63.95463 * 15 13 11 40 40 H 1.08993 * 109.46630 * 305.00221 * 16 13 11 41 41 H 1.09001 * 109.46418 * 64.99919 * 16 13 11 42 42 H 1.09002 * 109.47174 * 300.00121 * 17 16 13 43 43 H 1.08999 * 109.47082 * 59.99947 * 17 16 13 44 44 H 0.96999 * 119.99800 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1270 -0.1060 2.1449 6 6 3.0740 -1.8313 1.0515 7 6 1.6356 -2.1852 1.4344 8 1 1.0066 -2.6349 0.6661 9 6 1.3844 -2.6736 2.8624 10 7 0.8956 -4.0542 2.8274 11 6 0.6057 -4.6957 3.9767 12 8 0.7490 -4.1299 5.0399 13 6 0.0971 -6.1138 3.9404 14 1 -0.6006 -6.2285 3.1108 15 7 -0.5888 -6.4204 5.2028 16 6 1.2741 -7.0733 3.7534 17 6 0.7478 -8.5007 3.5918 18 6 1.9071 -9.4458 3.4082 19 1 2.9183 -9.0662 3.4065 20 6 1.6771 -10.7949 3.2413 21 7 0.4458 -11.2571 3.2428 22 14 3.1142 -11.9663 3.0131 23 1 4.3867 -11.2016 3.0489 24 1 3.1103 -12.9732 4.1046 25 1 2.9880 -12.6554 1.7036 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.8414 -1.9465 1.8170 34 1 3.3909 -2.0480 0.0313 35 1 0.6393 -2.0363 3.3385 36 1 2.3143 -2.6316 3.4296 37 1 0.7813 -4.5069 1.9772 38 1 0.0372 -6.3213 5.9878 39 1 -1.4083 -5.8432 5.3186 40 1 1.8357 -6.7900 2.8633 41 1 1.9259 -7.0229 4.6256 42 1 0.1861 -8.7839 4.4820 43 1 0.0959 -8.5510 2.7196 44 1 0.2839 -12.2063 3.1250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575828698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:37 Heat of formation + Delta-G solvation = -70.554431 kcal Electronic energy + Delta-G solvation = -20129.587498 eV Core-core repulsion = 17080.231532 eV Total energy + Delta-G solvation = -3049.355966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07597 -39.51297 -36.84134 -35.91583 -34.80462 -34.01316 -31.92161 -29.09264 -27.99823 -27.42512 -25.03553 -23.79739 -22.36381 -22.04859 -21.17517 -20.51063 -18.66174 -18.01853 -17.50040 -16.91574 -16.46287 -16.13242 -15.91720 -15.81357 -15.14499 -14.90099 -14.54166 -14.36654 -14.27196 -13.94223 -13.79199 -13.44787 -13.29935 -12.99050 -12.82000 -12.51114 -12.40986 -12.23712 -12.15062 -11.99387 -11.77612 -11.65885 -11.53440 -11.25835 -11.02538 -10.96344 -10.80541 -10.48865 -10.08376 -9.61403 -8.13556 -6.23645 1.41677 1.42661 1.50691 1.55450 2.13855 2.45027 2.81386 3.19541 3.53826 3.58684 3.81785 3.82954 3.99772 4.11759 4.14184 4.21680 4.32944 4.36282 4.44683 4.66922 4.67750 4.73232 4.79121 4.84751 4.94301 4.95362 5.01333 5.06121 5.17127 5.22959 5.26138 5.30120 5.43905 5.45195 5.54083 5.58092 5.85371 5.99469 6.10316 6.31170 6.45512 6.54483 6.95332 7.14357 7.44499 8.97909 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.003131 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.351599 B = 8941.613906 C = 9617.105672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.128 4.128 5 H 0.104 0.896 6 C -0.170 4.170 7 C -0.165 4.165 8 H 0.120 0.880 9 C 0.152 3.848 10 N -0.713 5.713 11 C 0.487 3.513 12 O -0.586 6.586 13 C 0.085 3.915 14 H 0.112 0.888 15 N -0.819 5.819 16 C -0.081 4.081 17 C 0.039 3.961 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.001 3.999 21 N -0.930 5.930 22 Si 0.960 3.040 23 H -0.264 1.264 24 H -0.281 1.281 25 H -0.277 1.277 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.415 0.585 38 H 0.345 0.655 39 H 0.346 0.654 40 H 0.067 0.933 41 H 0.041 0.959 42 H 0.005 0.995 43 H -0.005 1.005 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 24.029 -8.225 25.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.201 4.201 4 C -0.147 4.147 5 H 0.122 0.878 6 C -0.207 4.207 7 C -0.183 4.183 8 H 0.138 0.862 9 C 0.029 3.971 10 N -0.365 5.365 11 C 0.273 3.727 12 O -0.466 6.466 13 C -0.030 4.030 14 H 0.129 0.871 15 N -0.348 5.348 16 C -0.120 4.120 17 C 0.002 3.998 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.197 4.197 21 N -0.571 5.571 22 Si 0.785 3.215 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.202 1.202 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.024 0.976 43 H 0.014 0.986 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.401 23.556 -7.793 24.851 hybrid contribution 0.667 -0.113 0.037 0.677 sum 2.068 23.443 -7.756 24.779 Atomic orbital electron populations 1.21824 0.94822 1.01837 1.01865 1.20725 0.95767 0.96304 0.95556 1.21799 1.01146 0.95076 1.02075 1.22513 1.02315 0.89600 1.00256 0.87818 1.23293 0.91623 1.02521 1.03282 1.22440 0.99991 0.99716 0.96151 0.86183 1.20855 0.98671 0.81776 0.95847 1.46056 1.66353 1.14825 1.09234 1.22382 0.76545 0.90013 0.83798 1.90634 1.55280 1.69360 1.31361 1.21644 0.97628 0.88142 0.95617 0.87063 1.58982 1.11259 1.60876 1.03672 1.21384 0.94868 0.95219 1.00499 1.18833 0.94877 0.90496 0.95638 1.21760 0.94024 0.93236 1.48992 0.92664 1.25909 0.98260 1.00327 0.95203 1.70116 1.21212 1.14338 1.51393 0.85480 0.79605 0.78670 0.77752 1.18814 1.20713 1.20249 0.92850 0.92936 0.92056 0.90865 0.92507 0.91984 0.92689 0.89016 0.87643 0.92004 0.92802 0.74876 0.84180 0.84035 0.91406 0.94044 0.97630 0.98641 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.03 71.98 0.65 -1.07 16 2 C -0.07 -0.76 3.07 -10.79 -0.03 -0.79 16 3 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 4 C -0.13 -1.74 4.87 -10.80 -0.05 -1.79 16 5 H 0.10 1.46 8.11 -2.39 -0.02 1.44 16 6 C -0.17 -2.46 9.82 30.59 0.30 -2.16 16 7 C -0.16 -2.55 5.05 -10.79 -0.05 -2.60 16 8 H 0.12 1.68 7.50 -2.39 -0.02 1.66 16 9 C 0.15 3.22 5.96 86.38 0.51 3.74 16 10 N -0.71 -16.90 5.56 -463.07 -2.57 -19.47 16 11 C 0.49 15.11 7.07 87.66 0.62 15.73 16 12 O -0.59 -21.76 16.25 -3.04 -0.05 -21.81 16 13 C 0.09 2.84 3.15 44.17 0.14 2.98 16 14 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 15 N -0.82 -28.04 8.44 -171.79 -1.45 -29.49 16 16 C -0.08 -3.28 4.78 30.59 0.15 -3.14 16 17 C 0.04 2.02 4.86 29.85 0.15 2.16 16 18 C -0.54 -30.86 9.11 25.60 0.23 -30.63 16 19 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 20 C 0.00 0.04 5.46 84.65 0.46 0.50 16 21 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 22 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 23 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H 0.05 0.66 7.29 -2.39 -0.02 0.65 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.83 7.90 -2.39 -0.02 0.81 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 34 H 0.11 1.35 8.05 -2.39 -0.02 1.33 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.29 7.87 -2.39 -0.02 1.27 16 37 H 0.41 8.03 8.40 -92.71 -0.78 7.26 16 38 H 0.34 12.13 8.58 -89.70 -0.77 11.36 16 39 H 0.35 10.17 9.06 -89.69 -0.81 9.35 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.01 0.30 7.75 -2.39 -0.02 0.29 16 43 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -68.45 361.82 0.59 -67.85 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -1.38 Total: 30.79 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 3.73 Total: -17.89 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.74 Total: -105.52 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.45 0.59 -67.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575828698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.700 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds