Wall clock time and date at job start Mon Mar 30 2020 00:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47502 * 2 1 4 4 C 1.53006 * 109.47132 * 120.00115 * 2 1 3 5 5 H 1.08996 * 109.42543 * 292.96974 * 4 2 1 6 6 C 1.54305 * 109.19035 * 173.24750 * 4 2 1 7 7 C 1.47087 * 110.29571 * 168.69233 * 6 4 2 8 8 C 1.52564 * 114.33061 * 62.73330 * 7 6 4 9 9 C 1.50889 * 109.35437 * 274.98276 * 8 7 6 10 10 C 1.53942 * 110.09436 * 91.88226 * 9 8 7 11 11 N 1.44580 * 109.44832 * 52.89857 * 4 2 1 12 12 C 1.34778 * 118.64548 * 30.76450 * 11 4 2 13 13 O 1.21595 * 119.99708 * 6.77281 * 12 11 4 14 14 N 1.34767 * 120.00437 * 186.77334 * 12 11 4 15 15 C 1.46504 * 120.00594 * 175.02074 * 14 12 11 16 16 C 1.50693 * 109.47468 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99884 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00017 * 179.72713 * 16 15 14 19 19 N 1.31516 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00177 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47204 * 59.99245 * 20 18 16 22 22 H 1.48497 * 109.47407 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46879 * 299.99498 * 20 18 16 24 24 H 1.08998 * 109.46859 * 59.99567 * 1 2 3 25 25 H 1.08994 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46714 * 300.00316 * 1 2 3 27 27 H 1.09000 * 109.46904 * 239.99463 * 2 1 3 28 28 H 1.08993 * 109.46863 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46729 * 299.99860 * 3 2 1 30 30 H 1.08998 * 109.46968 * 59.99850 * 3 2 1 31 31 H 1.09008 * 109.39674 * 48.40064 * 6 4 2 32 32 H 1.09000 * 109.14522 * 288.82254 * 6 4 2 33 33 H 1.09007 * 108.51155 * 301.47739 * 7 6 4 34 34 H 1.09004 * 108.51124 * 183.99177 * 7 6 4 35 35 H 1.08998 * 109.49497 * 155.01930 * 8 7 6 36 36 H 1.09004 * 109.50840 * 34.95355 * 8 7 6 37 37 H 1.08997 * 109.36488 * 331.69466 * 9 8 7 38 38 H 1.08999 * 109.36343 * 212.07520 * 9 8 7 39 39 H 1.08999 * 108.94678 * 198.75320 * 10 9 8 40 40 H 1.09003 * 108.95136 * 80.12304 * 10 9 8 41 41 H 0.97001 * 119.99759 * 355.01659 * 14 12 11 42 42 H 1.08996 * 109.46970 * 59.99620 * 15 14 12 43 43 H 1.09004 * 109.46710 * 299.99966 * 15 14 12 44 44 H 0.96998 * 120.00568 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.7827 -0.1394 2.1343 6 6 3.5736 -0.8676 1.1600 7 6 4.1201 -1.3086 2.4523 8 6 3.6338 -2.6821 2.9047 9 6 2.3133 -2.5345 3.6197 10 6 1.1512 -2.6957 2.6231 11 7 1.4252 -2.0270 1.3360 12 6 1.0934 -2.6620 0.1945 13 8 1.4222 -2.1947 -0.8788 14 7 0.3973 -3.8150 0.2426 15 6 -0.0577 -4.4484 -0.9977 16 6 -0.8068 -5.7142 -0.6699 17 1 -0.9312 -6.0169 0.3594 18 6 -1.3378 -6.4831 -1.6836 19 7 -1.1909 -6.1118 -2.9366 20 14 -2.2658 -8.0526 -1.2773 21 1 -3.4359 -7.7286 -0.4222 22 1 -2.7333 -8.6907 -2.5341 23 1 -1.3664 -8.9860 -0.5526 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1301 1.4423 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 4.0138 0.0926 0.8908 32 1 3.8184 -1.6039 0.3945 33 1 3.8456 -0.5768 3.2121 34 1 5.2073 -1.3337 2.3779 35 1 4.3662 -3.1228 3.5809 36 1 3.5065 -3.3276 2.0356 37 1 2.2601 -1.5481 4.0805 38 1 2.2342 -3.2978 4.3938 39 1 0.2488 -2.2675 3.0594 40 1 0.9851 -3.7576 2.4418 41 1 0.1976 -4.2256 1.0984 42 1 0.8040 -4.6868 -1.6212 43 1 -0.7164 -3.7653 -1.5340 44 1 -1.5648 -6.6526 -3.6498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634808977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:08 Heat of formation + Delta-G solvation = -30.542604 kcal Electronic energy + Delta-G solvation = -22306.031928 eV Core-core repulsion = 19258.411005 eV Total energy + Delta-G solvation = -3047.620923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58697 -37.38110 -35.62184 -33.85356 -33.57356 -32.01804 -31.28593 -27.50537 -27.10734 -25.77472 -25.06979 -22.69036 -21.47138 -20.47582 -20.24076 -19.02008 -17.24373 -16.25821 -15.90579 -15.57144 -14.87660 -14.74385 -14.25464 -14.20872 -13.99525 -13.66885 -12.97636 -12.91033 -12.70014 -12.31981 -12.20809 -12.01588 -11.87405 -11.63192 -11.49801 -11.17956 -10.97670 -10.89907 -10.84347 -10.69650 -10.64282 -10.54765 -10.30051 -10.16995 -10.05539 -9.34288 -8.70077 -8.51625 -8.20978 -7.63698 -6.12473 -4.18843 3.27209 3.28896 3.32559 3.36199 3.95695 4.33343 4.58614 4.75043 4.89066 4.90626 5.13329 5.16811 5.23495 5.25789 5.39103 5.48045 5.57695 5.67374 5.70015 5.79057 5.83871 5.93004 5.94428 6.04088 6.10031 6.13236 6.20175 6.25952 6.27528 6.33438 6.45731 6.52565 6.76623 6.83442 7.16395 7.32540 7.57023 7.62071 7.67432 7.91358 8.07041 8.80586 8.97491 9.40448 9.55530 10.97673 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.005294 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.190574 B = 5287.667946 C = 6008.434710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C -0.145 4.145 4 C 0.182 3.818 5 H 0.067 0.933 6 C -0.136 4.136 7 C -0.113 4.113 8 C -0.116 4.116 9 C -0.129 4.129 10 C 0.112 3.888 11 N -0.628 5.628 12 C 0.696 3.304 13 O -0.588 6.588 14 N -0.733 5.733 15 C 0.268 3.732 16 C -0.541 4.541 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.886 5.886 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.130 0.870 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.384 0.616 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 10.605 13.108 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C -0.203 4.203 4 C 0.077 3.923 5 H 0.085 0.915 6 C -0.175 4.175 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.167 4.167 10 C -0.012 4.012 11 N -0.366 5.366 12 C 0.398 3.602 13 O -0.468 6.468 14 N -0.387 5.387 15 C 0.146 3.854 16 C -0.580 4.580 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.523 5.523 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.148 0.852 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.219 0.781 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.556 10.873 12.109 17.943 hybrid contribution -0.666 -1.091 0.704 1.459 sum 6.890 9.782 12.814 17.532 Atomic orbital electron populations 1.21724 0.95485 1.01949 0.99788 1.21978 0.96214 0.94694 1.01301 1.21926 1.00560 0.96838 1.00968 1.20639 0.91142 0.82405 0.98092 0.91458 1.21243 0.96382 1.01927 0.97910 1.20431 1.00009 0.96755 0.97815 1.21055 0.96223 0.97663 1.00472 1.21750 0.94955 1.02254 0.97733 1.21802 0.97184 0.97720 0.84459 1.46969 1.66238 1.18812 1.04559 1.16092 0.79259 0.81138 0.83690 1.90689 1.60737 1.66973 1.28441 1.46010 1.57371 1.23411 1.11923 1.18928 0.94501 0.91557 0.80372 1.21185 1.36036 1.07453 0.93308 0.92185 1.24926 0.96069 0.98150 0.94777 1.69965 1.44644 1.38751 0.98941 0.86501 0.80029 0.82800 0.77714 1.20129 1.21089 1.20116 0.93434 0.92253 0.94545 0.85216 0.92900 0.92911 0.93765 0.91168 0.91245 0.92786 0.92915 0.92311 0.91307 0.91752 0.90961 0.92403 0.90480 0.78109 0.95812 0.95928 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.53 37.16 0.32 -1.84 16 2 C -0.12 -1.90 1.84 -90.61 -0.17 -2.06 16 3 C -0.15 -1.77 9.00 37.16 0.33 -1.43 16 4 C 0.18 2.54 1.51 -68.27 -0.10 2.43 16 5 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 6 C -0.14 -1.74 4.98 -28.89 -0.14 -1.88 16 7 C -0.11 -1.21 5.15 -29.79 -0.15 -1.37 16 8 C -0.12 -1.29 5.51 -28.01 -0.15 -1.44 16 9 C -0.13 -1.29 5.71 -27.30 -0.16 -1.44 16 10 C 0.11 1.39 5.93 -2.94 -0.02 1.38 16 11 N -0.63 -9.73 1.86 -170.94 -0.32 -10.05 16 12 C 0.70 14.12 5.94 -86.93 -0.52 13.60 16 13 O -0.59 -13.76 12.22 5.28 0.06 -13.69 16 14 N -0.73 -15.81 5.40 -66.42 -0.36 -16.17 16 15 C 0.27 7.17 5.43 -5.19 -0.03 7.14 16 16 C -0.54 -14.80 9.28 -34.45 -0.32 -15.12 16 17 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 20 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 1.15 5.50 -51.93 -0.29 0.86 16 26 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.13 2.47 5.36 -52.80 -0.28 2.19 16 28 H 0.05 0.58 6.39 -51.93 -0.33 0.25 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.80 6.19 -51.92 -0.32 0.48 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.95 7.48 -51.93 -0.39 0.56 16 37 H 0.06 0.59 7.32 -51.93 -0.38 0.21 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.99 5.80 -51.93 -0.30 0.69 16 41 H 0.38 7.30 5.79 -40.82 -0.24 7.06 16 42 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -30.47 328.58 -8.66 -39.13 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.51 Total: 5.74 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.20 Total: -0.34 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.06 Total: -51.73 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.06 Total: -13.69 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.47 -8.66 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634808977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.585 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds