Wall clock time and date at job start Mon Mar 30 2020 00:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47502 * 2 1 4 4 C 1.53006 * 109.47132 * 120.00115 * 2 1 3 5 5 H 1.08996 * 109.42543 * 292.96974 * 4 2 1 6 6 C 1.54305 * 109.19035 * 173.24750 * 4 2 1 7 7 C 1.47087 * 110.29571 * 168.69233 * 6 4 2 8 8 C 1.52564 * 114.33061 * 62.73330 * 7 6 4 9 9 C 1.50889 * 109.35437 * 274.98276 * 8 7 6 10 10 C 1.53942 * 110.09436 * 91.88226 * 9 8 7 11 11 N 1.44580 * 109.44832 * 52.89857 * 4 2 1 12 12 C 1.34778 * 118.64548 * 30.76450 * 11 4 2 13 13 O 1.21595 * 119.99708 * 6.77281 * 12 11 4 14 14 N 1.34767 * 120.00437 * 186.77334 * 12 11 4 15 15 C 1.46504 * 120.00594 * 175.02074 * 14 12 11 16 16 C 1.50693 * 109.47468 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99884 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00017 * 179.72713 * 16 15 14 19 19 N 1.31516 * 120.00384 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00177 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47204 * 59.99245 * 20 18 16 22 22 H 1.48497 * 109.47407 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46879 * 299.99498 * 20 18 16 24 24 H 1.08998 * 109.46859 * 59.99567 * 1 2 3 25 25 H 1.08994 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46714 * 300.00316 * 1 2 3 27 27 H 1.09000 * 109.46904 * 239.99463 * 2 1 3 28 28 H 1.08993 * 109.46863 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46729 * 299.99860 * 3 2 1 30 30 H 1.08998 * 109.46968 * 59.99850 * 3 2 1 31 31 H 1.09008 * 109.39674 * 48.40064 * 6 4 2 32 32 H 1.09000 * 109.14522 * 288.82254 * 6 4 2 33 33 H 1.09007 * 108.51155 * 301.47739 * 7 6 4 34 34 H 1.09004 * 108.51124 * 183.99177 * 7 6 4 35 35 H 1.08998 * 109.49497 * 155.01930 * 8 7 6 36 36 H 1.09004 * 109.50840 * 34.95355 * 8 7 6 37 37 H 1.08997 * 109.36488 * 331.69466 * 9 8 7 38 38 H 1.08999 * 109.36343 * 212.07520 * 9 8 7 39 39 H 1.08999 * 108.94678 * 198.75320 * 10 9 8 40 40 H 1.09003 * 108.95136 * 80.12304 * 10 9 8 41 41 H 0.97001 * 119.99759 * 355.01659 * 14 12 11 42 42 H 1.08996 * 109.46970 * 59.99620 * 15 14 12 43 43 H 1.09004 * 109.46710 * 299.99966 * 15 14 12 44 44 H 0.96998 * 120.00568 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.7827 -0.1394 2.1343 6 6 3.5736 -0.8676 1.1600 7 6 4.1201 -1.3086 2.4523 8 6 3.6338 -2.6821 2.9047 9 6 2.3133 -2.5345 3.6197 10 6 1.1512 -2.6957 2.6231 11 7 1.4252 -2.0270 1.3360 12 6 1.0934 -2.6620 0.1945 13 8 1.4222 -2.1947 -0.8788 14 7 0.3973 -3.8150 0.2426 15 6 -0.0577 -4.4484 -0.9977 16 6 -0.8068 -5.7142 -0.6699 17 1 -0.9312 -6.0169 0.3594 18 6 -1.3378 -6.4831 -1.6836 19 7 -1.1909 -6.1118 -2.9366 20 14 -2.2658 -8.0526 -1.2773 21 1 -3.4359 -7.7286 -0.4222 22 1 -2.7333 -8.6907 -2.5341 23 1 -1.3664 -8.9860 -0.5526 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1301 1.4423 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 4.0138 0.0926 0.8908 32 1 3.8184 -1.6039 0.3945 33 1 3.8456 -0.5768 3.2121 34 1 5.2073 -1.3337 2.3779 35 1 4.3662 -3.1228 3.5809 36 1 3.5065 -3.3276 2.0356 37 1 2.2601 -1.5481 4.0805 38 1 2.2342 -3.2978 4.3938 39 1 0.2488 -2.2675 3.0594 40 1 0.9851 -3.7576 2.4418 41 1 0.1976 -4.2256 1.0984 42 1 0.8040 -4.6868 -1.6212 43 1 -0.7164 -3.7653 -1.5340 44 1 -1.5648 -6.6526 -3.6498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634808977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:08 Heat of formation + Delta-G solvation = -49.397022 kcal Electronic energy + Delta-G solvation = -22306.849517 eV Core-core repulsion = 19258.411005 eV Total energy + Delta-G solvation = -3048.438512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.95830 -38.74960 -36.91479 -35.63883 -34.94627 -33.89113 -32.33334 -29.38411 -28.32553 -27.02323 -26.21024 -24.57589 -22.79848 -21.64587 -21.31631 -20.60102 -18.83936 -17.82616 -17.48188 -16.96537 -16.58179 -16.02147 -15.67268 -15.45007 -15.15377 -14.82187 -14.58160 -14.37472 -14.06831 -13.86568 -13.52916 -13.30246 -13.15710 -12.95667 -12.88175 -12.73257 -12.65366 -12.33022 -12.14847 -12.04404 -11.86698 -11.63315 -11.53329 -11.44886 -11.30659 -11.06852 -10.77737 -10.10925 -9.82964 -9.23756 -8.27815 -6.44510 1.42254 1.46903 1.54946 1.93398 2.34582 2.39031 3.06757 3.19646 3.75060 3.84015 4.01198 4.07017 4.17683 4.24127 4.28681 4.42513 4.55119 4.61946 4.73544 4.76776 4.81093 4.93566 4.94594 4.99100 5.04153 5.08430 5.14843 5.25578 5.27945 5.29657 5.32541 5.34577 5.41395 5.45788 5.51741 5.52992 5.57602 5.83323 5.92393 6.09318 6.21210 6.67836 7.25491 7.30387 7.88149 8.84280 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023112 B = 0.005294 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.190574 B = 5287.667946 C = 6008.434710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.125 4.125 3 C -0.136 4.136 4 C 0.178 3.822 5 H 0.101 0.899 6 C -0.128 4.128 7 C -0.113 4.113 8 C -0.118 4.118 9 C -0.119 4.119 10 C 0.102 3.898 11 N -0.615 5.615 12 C 0.692 3.308 13 O -0.627 6.627 14 N -0.732 5.732 15 C 0.291 3.709 16 C -0.555 4.555 17 H 0.080 0.920 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.039 0.961 25 H 0.021 0.979 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.398 0.602 42 H -0.019 1.019 43 H -0.018 1.018 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 11.099 16.858 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C -0.194 4.194 4 C 0.074 3.926 5 H 0.119 0.881 6 C -0.167 4.167 7 C -0.150 4.150 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.020 4.020 11 N -0.352 5.352 12 C 0.395 3.605 13 O -0.510 6.510 14 N -0.388 5.388 15 C 0.167 3.833 16 C -0.593 4.593 17 H 0.098 0.902 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.808 3.192 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.187 1.187 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.235 0.765 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.652 11.397 15.939 21.035 hybrid contribution -0.642 -1.161 -0.492 1.415 sum 7.011 10.236 15.447 19.813 Atomic orbital electron populations 1.21664 0.96407 0.99668 1.00698 1.21830 0.95397 0.96808 1.00298 1.21834 1.01280 0.94274 1.02002 1.20889 0.91776 0.81500 0.98464 0.88149 1.21189 0.95621 1.01721 0.98145 1.20432 1.00441 0.97104 0.97004 1.21072 0.97628 0.97321 0.99535 1.21739 0.92653 1.04302 0.97018 1.22117 0.99481 0.97027 0.83415 1.46994 1.64974 1.19016 1.04172 1.16293 0.78878 0.80670 0.84686 1.90710 1.61920 1.67699 1.30625 1.45652 1.58169 1.24210 1.10779 1.18289 0.91993 0.91311 0.81685 1.21553 1.35956 1.07409 0.94415 0.90218 1.26054 0.96865 1.02188 0.94348 1.70140 1.45841 1.40568 1.00374 0.85213 0.78749 0.77626 0.77648 1.18631 1.20987 1.18682 0.94191 0.96034 0.91859 0.89743 0.91676 0.93226 0.91371 0.89437 0.95375 0.90135 0.92093 0.90489 0.95009 0.89587 0.88776 0.90529 0.91460 0.76474 1.00148 1.00025 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.53 71.98 0.61 -3.59 16 2 C -0.12 -3.84 1.84 -10.79 -0.02 -3.86 16 3 C -0.14 -3.06 9.00 71.98 0.65 -2.41 16 4 C 0.18 4.69 1.51 45.79 0.07 4.76 16 5 H 0.10 2.07 8.06 -2.39 -0.02 2.06 16 6 C -0.13 -3.13 4.98 29.20 0.15 -2.98 16 7 C -0.11 -2.09 5.15 28.61 0.15 -1.94 16 8 C -0.12 -2.33 5.51 29.76 0.16 -2.16 16 9 C -0.12 -1.93 5.71 30.23 0.17 -1.76 16 10 C 0.10 2.33 5.93 86.49 0.51 2.85 16 11 N -0.61 -18.97 1.86 -812.99 -1.51 -20.47 16 12 C 0.69 29.68 5.94 179.06 1.06 30.75 16 13 O -0.63 -31.83 12.22 -4.01 -0.05 -31.88 16 14 N -0.73 -33.30 5.40 -482.30 -2.60 -35.90 16 15 C 0.29 16.67 5.43 85.63 0.47 17.14 16 16 C -0.56 -31.16 9.28 25.60 0.24 -30.92 16 17 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 18 C 0.01 0.29 5.46 84.65 0.46 0.75 16 19 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 20 Si 0.98 43.03 29.54 68.60 2.03 45.05 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.02 0.85 5.50 -2.39 -0.01 0.84 16 26 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.08 3.45 5.36 -16.17 -0.09 3.36 16 28 H 0.06 1.30 6.39 -2.39 -0.02 1.28 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.81 6.19 -2.38 -0.01 1.80 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.13 7.36 -2.38 -0.02 1.12 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.03 0.86 7.48 -2.38 -0.02 0.85 16 37 H 0.09 1.09 7.32 -2.39 -0.02 1.08 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.67 5.80 -2.39 -0.01 1.66 16 41 H 0.40 15.49 5.79 -92.71 -0.54 14.96 16 42 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 43 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -72.29 328.58 3.19 -69.10 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.36 Total: 24.54 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.68 Total: 6.61 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -3.83 Total: -113.42 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.05 Total: -31.88 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.29 3.19 -69.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634808977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.702 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds