Wall clock time and date at job start Mon Mar 30 2020 00:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47401 * 2 1 4 4 C 1.53000 * 109.47401 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.46851 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00607 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99813 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99988 * 0.02562 * 7 5 4 9 9 C 1.46496 * 120.00035 * 179.97438 * 7 5 4 10 10 C 1.53044 * 109.46000 * 120.00229 * 9 7 5 11 11 C 1.53190 * 109.31538 * 181.38470 * 10 9 7 12 12 N 1.46928 * 108.89085 * 305.29623 * 11 10 9 13 13 C 1.36941 * 120.62869 * 233.67699 * 12 11 10 14 14 H 1.08010 * 119.99649 * 27.39101 * 13 12 11 15 15 C 1.38804 * 120.00378 * 207.38960 * 13 12 11 16 16 N 1.31624 * 120.00025 * 17.26718 * 15 13 12 17 17 Si 1.86801 * 120.00311 * 197.26803 * 15 13 12 18 18 H 1.48490 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46826 * 120.00101 * 17 15 13 20 20 H 1.48498 * 109.47107 * 239.99663 * 17 15 13 21 21 C 1.47201 * 118.56064 * 53.53885 * 12 11 10 22 22 C 1.53045 * 109.46218 * 240.06872 * 9 7 5 23 23 H 1.09001 * 109.46845 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47028 * 299.99723 * 1 2 3 25 25 H 1.08999 * 109.47117 * 59.99567 * 1 2 3 26 26 H 1.09002 * 109.47253 * 240.00002 * 2 1 3 27 27 H 1.08999 * 109.47117 * 120.00433 * 2 1 3 28 28 H 1.09002 * 109.46915 * 59.99795 * 3 2 1 29 29 H 1.08999 * 109.47339 * 300.00297 * 3 2 1 30 30 H 1.08995 * 109.47028 * 60.00277 * 4 3 2 31 31 H 1.08999 * 109.47117 * 300.00433 * 4 3 2 32 32 H 1.08996 * 109.46752 * 269.99797 * 8 7 5 33 33 H 1.08997 * 109.47065 * 29.99820 * 8 7 5 34 34 H 1.08997 * 109.47205 * 149.99743 * 8 7 5 35 35 H 1.08996 * 109.45039 * 0.03623 * 9 7 5 36 36 H 1.09007 * 109.49718 * 61.43555 * 10 9 7 37 37 H 1.09003 * 109.52559 * 301.35479 * 10 9 7 38 38 H 1.08998 * 109.58570 * 65.15218 * 11 10 9 39 39 H 1.09000 * 109.58672 * 185.43476 * 11 10 9 40 40 H 0.96996 * 120.00327 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.53783 * 186.67345 * 21 12 11 42 42 H 1.09001 * 109.67476 * 66.36192 * 21 12 11 43 43 H 1.09000 * 109.49621 * 298.56628 * 22 9 7 44 44 H 1.09003 * 109.49716 * 58.62995 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0723 2.8632 0.0000 6 8 3.2842 3.7851 0.0013 7 7 5.3974 3.1095 0.0001 8 6 6.3495 1.9960 -0.0010 9 6 5.8857 4.4907 0.0002 10 6 6.7359 4.7309 1.2499 11 6 7.2161 6.1855 1.2642 12 7 7.9111 6.4695 0.0012 13 6 9.1802 6.9838 0.0036 14 1 9.8415 6.7860 0.8344 15 6 9.6169 7.7594 -1.0615 16 7 8.7437 8.2842 -1.8949 17 14 11.4437 8.0582 -1.3122 18 1 12.2097 7.3640 -0.2463 19 1 11.8536 7.5328 -2.6394 20 1 11.7199 9.5160 -1.2503 21 6 7.2148 6.1861 -1.2644 22 6 6.7346 4.7315 -1.2503 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9330 0.9288 -0.8908 31 1 3.9338 0.9284 0.8891 32 1 6.5856 1.7190 1.0264 33 1 5.9091 1.1420 -0.5155 34 1 7.2619 2.2986 -0.5146 35 1 5.0377 5.1755 0.0007 36 1 7.5976 4.0634 1.2375 37 1 6.1378 4.5364 2.1402 38 1 6.3598 6.8520 1.3679 39 1 7.8998 6.3364 2.0995 40 1 9.0488 8.8265 -2.6391 41 1 7.8996 6.3368 -2.0988 42 1 6.3586 6.8525 -1.3694 43 1 7.5963 4.0641 -1.2391 44 1 6.1354 4.5370 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647051268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:51 Heat of formation + Delta-G solvation = -35.527437 kcal Electronic energy + Delta-G solvation = -21214.994648 eV Core-core repulsion = 18167.157567 eV Total energy + Delta-G solvation = -3047.837081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95502 -37.51234 -35.48233 -35.01935 -32.53879 -30.85017 -30.02203 -29.41529 -26.81948 -25.56126 -24.25713 -22.17737 -21.95723 -21.10589 -19.19736 -18.72815 -16.92424 -16.62184 -16.15291 -15.78655 -14.97474 -14.74555 -13.95034 -13.90275 -13.58756 -13.49803 -13.43336 -13.01427 -12.66121 -12.53172 -12.46017 -12.36807 -12.15222 -11.47665 -11.47363 -11.29199 -11.17734 -11.09354 -10.79784 -10.73822 -10.73077 -10.33043 -10.18122 -10.07262 -9.74445 -9.65815 -9.39264 -8.53553 -8.26126 -6.69235 -5.79010 -3.20961 2.81790 3.21662 3.36847 3.44521 3.46673 4.49190 4.52936 4.72045 4.76532 5.00082 5.09758 5.19979 5.31507 5.33445 5.41705 5.44050 5.47826 5.54592 5.62057 5.65625 5.70166 5.73058 5.77050 5.90500 5.94598 6.09229 6.10037 6.21933 6.25306 6.36510 6.50591 6.59251 6.64301 6.78214 6.93433 6.98583 7.34609 7.60152 7.68975 7.79411 8.39038 8.44127 9.20241 9.83883 10.41246 11.29915 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047474 B = 0.003542 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.655723 B = 7902.211938 C = 7955.348784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.139 4.139 5 C 0.507 3.493 6 O -0.545 6.545 7 N -0.611 5.611 8 C 0.077 3.923 9 C 0.144 3.856 10 C -0.137 4.137 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.173 3.827 22 C -0.145 4.145 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.253 0.747 41 H 0.091 0.909 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 -17.313 3.300 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.179 4.179 5 C 0.295 3.705 6 O -0.423 6.423 7 N -0.343 5.343 8 C -0.067 4.067 9 C 0.042 3.958 10 C -0.177 4.177 11 C 0.020 3.980 12 N -0.316 5.316 13 C -0.381 4.381 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.047 3.953 22 C -0.185 4.185 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.802 -16.703 3.169 19.624 hybrid contribution 1.083 0.078 -0.216 1.107 sum -8.719 -16.625 2.953 19.003 Atomic orbital electron populations 1.21761 0.95799 1.01370 1.02064 1.21548 0.96059 0.96767 1.01834 1.21382 0.92997 0.96335 1.03637 1.21719 0.97820 0.94443 1.03872 1.20721 0.82109 0.91542 0.76089 1.90682 1.54911 1.46595 1.50134 1.48194 1.05525 1.07869 1.72712 1.21744 0.94234 0.89116 1.01574 1.21178 0.97407 0.81037 0.96209 1.22350 0.98704 1.00577 0.96044 1.20863 0.95384 0.91406 0.90334 1.44160 1.14542 1.73451 0.99415 1.19222 0.88072 1.24762 1.06010 0.91574 1.25047 0.97751 0.97018 0.99937 1.70043 1.32016 1.34866 1.17748 0.86231 0.85339 0.77534 0.77720 1.20280 1.21583 1.21729 1.20803 0.95865 0.88152 0.90520 1.22550 0.98321 1.02139 0.95483 0.92907 0.92670 0.92654 0.92081 0.92095 0.91267 0.91240 0.89201 0.89266 0.92847 0.91538 0.90463 0.88781 0.92164 0.93058 0.96251 0.92521 0.93649 0.89112 0.96148 0.92435 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.78 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.11 -1.09 4.50 -26.73 -0.12 -1.21 16 4 C -0.14 -1.42 4.25 -27.89 -0.12 -1.54 16 5 C 0.51 7.67 7.67 -10.99 -0.08 7.58 16 6 O -0.55 -10.49 15.31 5.56 0.09 -10.40 16 7 N -0.61 -9.09 2.76 -173.89 -0.48 -9.57 16 8 C 0.08 0.85 9.33 59.85 0.56 1.41 16 9 C 0.14 2.61 2.48 -67.89 -0.17 2.44 16 10 C -0.14 -2.44 5.34 -26.61 -0.14 -2.58 16 11 C 0.15 3.15 6.51 -3.71 -0.02 3.12 16 12 N -0.59 -14.92 3.01 -172.10 -0.52 -15.44 16 13 C -0.25 -6.87 9.59 -15.06 -0.14 -7.02 16 14 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 16 N -0.90 -26.31 11.18 55.49 0.62 -25.69 16 17 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C 0.17 4.18 5.33 -3.56 -0.02 4.16 16 22 C -0.14 -2.82 5.31 -26.61 -0.14 -2.96 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.09 0.77 7.40 -51.93 -0.38 0.39 16 31 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 34 H 0.08 0.91 6.46 -51.93 -0.34 0.58 16 35 H 0.09 1.96 6.90 -51.93 -0.36 1.60 16 36 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.09 6.72 -51.93 -0.35 0.74 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -31.42 341.79 -8.38 -39.80 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.93 Total: -1.83 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.28 Total: 1.43 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.38 Total: -50.71 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.42 -8.38 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647051268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.270 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds