Wall clock time and date at job start Mon Mar 30 2020 00:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47401 * 2 1 4 4 C 1.53000 * 109.47401 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.46851 * 180.02562 * 4 3 2 6 6 O 1.21281 * 120.00607 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99813 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99988 * 0.02562 * 7 5 4 9 9 C 1.46496 * 120.00035 * 179.97438 * 7 5 4 10 10 C 1.53044 * 109.46000 * 120.00229 * 9 7 5 11 11 C 1.53190 * 109.31538 * 181.38470 * 10 9 7 12 12 N 1.46928 * 108.89085 * 305.29623 * 11 10 9 13 13 C 1.36941 * 120.62869 * 233.67699 * 12 11 10 14 14 H 1.08010 * 119.99649 * 27.39101 * 13 12 11 15 15 C 1.38804 * 120.00378 * 207.38960 * 13 12 11 16 16 N 1.31624 * 120.00025 * 17.26718 * 15 13 12 17 17 Si 1.86801 * 120.00311 * 197.26803 * 15 13 12 18 18 H 1.48490 * 109.47145 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46826 * 120.00101 * 17 15 13 20 20 H 1.48498 * 109.47107 * 239.99663 * 17 15 13 21 21 C 1.47201 * 118.56064 * 53.53885 * 12 11 10 22 22 C 1.53045 * 109.46218 * 240.06872 * 9 7 5 23 23 H 1.09001 * 109.46845 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47028 * 299.99723 * 1 2 3 25 25 H 1.08999 * 109.47117 * 59.99567 * 1 2 3 26 26 H 1.09002 * 109.47253 * 240.00002 * 2 1 3 27 27 H 1.08999 * 109.47117 * 120.00433 * 2 1 3 28 28 H 1.09002 * 109.46915 * 59.99795 * 3 2 1 29 29 H 1.08999 * 109.47339 * 300.00297 * 3 2 1 30 30 H 1.08995 * 109.47028 * 60.00277 * 4 3 2 31 31 H 1.08999 * 109.47117 * 300.00433 * 4 3 2 32 32 H 1.08996 * 109.46752 * 269.99797 * 8 7 5 33 33 H 1.08997 * 109.47065 * 29.99820 * 8 7 5 34 34 H 1.08997 * 109.47205 * 149.99743 * 8 7 5 35 35 H 1.08996 * 109.45039 * 0.03623 * 9 7 5 36 36 H 1.09007 * 109.49718 * 61.43555 * 10 9 7 37 37 H 1.09003 * 109.52559 * 301.35479 * 10 9 7 38 38 H 1.08998 * 109.58570 * 65.15218 * 11 10 9 39 39 H 1.09000 * 109.58672 * 185.43476 * 11 10 9 40 40 H 0.96996 * 120.00327 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.53783 * 186.67345 * 21 12 11 42 42 H 1.09001 * 109.67476 * 66.36192 * 21 12 11 43 43 H 1.09000 * 109.49621 * 298.56628 * 22 9 7 44 44 H 1.09003 * 109.49716 * 58.62995 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0723 2.8632 0.0000 6 8 3.2842 3.7851 0.0013 7 7 5.3974 3.1095 0.0001 8 6 6.3495 1.9960 -0.0010 9 6 5.8857 4.4907 0.0002 10 6 6.7359 4.7309 1.2499 11 6 7.2161 6.1855 1.2642 12 7 7.9111 6.4695 0.0012 13 6 9.1802 6.9838 0.0036 14 1 9.8415 6.7860 0.8344 15 6 9.6169 7.7594 -1.0615 16 7 8.7437 8.2842 -1.8949 17 14 11.4437 8.0582 -1.3122 18 1 12.2097 7.3640 -0.2463 19 1 11.8536 7.5328 -2.6394 20 1 11.7199 9.5160 -1.2503 21 6 7.2148 6.1861 -1.2644 22 6 6.7346 4.7315 -1.2503 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9330 0.9288 -0.8908 31 1 3.9338 0.9284 0.8891 32 1 6.5856 1.7190 1.0264 33 1 5.9091 1.1420 -0.5155 34 1 7.2619 2.2986 -0.5146 35 1 5.0377 5.1755 0.0007 36 1 7.5976 4.0634 1.2375 37 1 6.1378 4.5364 2.1402 38 1 6.3598 6.8520 1.3679 39 1 7.8998 6.3364 2.0995 40 1 9.0488 8.8265 -2.6391 41 1 7.8996 6.3368 -2.0988 42 1 6.3586 6.8525 -1.3694 43 1 7.5963 4.0641 -1.2391 44 1 6.1354 4.5370 -2.1398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647051268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:50 Heat of formation + Delta-G solvation = -53.799261 kcal Electronic energy + Delta-G solvation = -21215.786974 eV Core-core repulsion = 18167.157567 eV Total energy + Delta-G solvation = -3048.629407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19734 -39.08674 -36.61517 -36.17250 -34.30673 -32.23932 -31.58483 -30.83277 -27.89228 -27.10359 -25.50380 -23.90297 -23.46515 -21.92149 -20.79262 -19.96101 -18.76250 -17.88934 -17.19435 -17.04001 -16.68578 -15.82990 -15.64633 -15.40398 -14.91287 -14.63944 -14.53975 -14.49086 -14.09700 -13.92962 -13.57146 -13.32586 -13.21595 -13.06402 -12.98277 -12.64160 -12.50762 -12.19063 -12.09764 -12.00205 -11.95562 -11.91221 -11.83776 -11.48011 -11.42200 -11.34086 -10.70883 -10.59340 -9.56084 -8.74621 -7.89067 -5.34931 1.47031 1.48490 1.59676 1.67667 2.06364 2.50772 3.26815 3.56958 3.63738 3.90803 3.95613 4.03910 4.08060 4.28580 4.30462 4.41281 4.43423 4.48713 4.62164 4.64513 4.67061 4.74439 4.80834 4.83155 4.95700 5.00022 5.01314 5.04026 5.05903 5.13004 5.13307 5.27377 5.30537 5.41302 5.43613 5.52291 5.61927 5.63066 5.67444 6.36392 6.50850 7.11241 7.23743 7.81198 8.35235 9.18601 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047474 B = 0.003542 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.655723 B = 7902.211938 C = 7955.348784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.105 4.105 4 C -0.127 4.127 5 C 0.498 3.502 6 O -0.598 6.598 7 N -0.610 5.610 8 C 0.069 3.931 9 C 0.152 3.848 10 C -0.119 4.119 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.260 4.260 14 H 0.072 0.928 15 C -0.054 4.054 16 N -0.939 5.939 17 Si 0.971 3.029 18 H -0.263 1.263 19 H -0.289 1.289 20 H -0.295 1.295 21 C 0.181 3.819 22 C -0.127 4.127 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.004 0.996 39 H 0.064 0.936 40 H 0.250 0.750 41 H 0.061 0.939 42 H -0.013 1.013 43 H 0.070 0.930 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.535 -20.679 4.178 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.143 4.143 4 C -0.166 4.166 5 C 0.289 3.711 6 O -0.479 6.479 7 N -0.341 5.341 8 C -0.072 4.072 9 C 0.048 3.952 10 C -0.159 4.159 11 C 0.016 3.984 12 N -0.332 5.332 13 C -0.390 4.390 14 H 0.090 0.910 15 C -0.249 4.249 16 N -0.585 5.585 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.222 1.222 21 C 0.054 3.946 22 C -0.166 4.166 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.022 0.978 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.005 0.995 43 H 0.089 0.911 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.886 -20.124 4.074 22.373 hybrid contribution 0.737 1.161 -0.455 1.448 sum -8.149 -18.963 3.619 20.955 Atomic orbital electron populations 1.21792 0.95942 1.02103 1.01495 1.21509 0.95950 0.94870 1.03162 1.21358 0.93404 0.97807 1.01721 1.21765 0.97312 0.91041 1.06477 1.21680 0.81567 0.93167 0.74684 1.90667 1.56185 1.48637 1.52391 1.48188 1.06398 1.07204 1.72349 1.22058 0.93245 0.88567 1.03339 1.20751 0.95858 0.83040 0.95558 1.22128 0.99216 0.97934 0.96593 1.21007 0.94751 0.93598 0.89030 1.44410 1.14455 1.73645 1.00734 1.19587 0.89096 1.24262 1.06074 0.90989 1.25865 1.01917 0.97197 0.99920 1.70213 1.33991 1.35956 1.18351 0.85156 0.80281 0.76948 0.77743 1.18701 1.21574 1.22187 1.20559 0.93821 0.90649 0.89560 1.22269 0.98978 0.98738 0.96657 0.91478 0.93238 0.93360 0.90757 0.90610 0.93187 0.93403 0.86449 0.86289 0.90868 0.88060 0.91149 0.92217 0.90766 0.91207 0.97771 0.91778 0.94096 0.92078 0.99494 0.91112 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.12 -1.50 5.93 30.59 0.18 -1.31 16 3 C -0.10 -2.00 4.50 30.59 0.14 -1.86 16 4 C -0.13 -2.17 4.25 29.85 0.13 -2.04 16 5 C 0.50 14.29 7.67 87.65 0.67 14.96 16 6 O -0.60 -23.36 15.31 -3.03 -0.05 -23.41 16 7 N -0.61 -16.80 2.76 -822.44 -2.27 -19.07 16 8 C 0.07 1.24 9.33 127.77 1.19 2.43 16 9 C 0.15 5.44 2.48 45.02 0.11 5.55 16 10 C -0.12 -4.07 5.34 30.67 0.16 -3.91 16 11 C 0.14 6.10 6.51 86.36 0.56 6.66 16 12 N -0.61 -31.18 3.01 -698.40 -2.10 -33.28 16 13 C -0.26 -14.32 9.59 84.03 0.81 -13.51 16 14 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 15 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 16 N -0.94 -56.57 11.18 21.65 0.24 -56.33 16 17 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 18 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 C 0.18 9.06 5.33 86.31 0.46 9.52 16 22 C -0.13 -4.92 5.31 30.67 0.16 -4.76 16 23 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.12 1.43 7.40 -2.39 -0.02 1.41 16 31 H 0.12 1.41 8.11 -2.39 -0.02 1.39 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.13 6.44 -2.39 -0.02 1.11 16 34 H 0.07 1.39 6.46 -2.39 -0.02 1.38 16 35 H 0.06 2.58 6.90 -2.39 -0.02 2.56 16 36 H 0.07 2.37 7.72 -2.38 -0.02 2.35 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.06 2.61 7.93 -2.39 -0.02 2.59 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.06 3.41 6.04 -2.39 -0.01 3.40 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.07 2.57 6.72 -2.39 -0.02 2.56 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -71.50 341.79 4.51 -67.00 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.94 Total: 10.58 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.71 Total: 7.75 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -4.13 Total: -108.68 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.50 4.51 -67.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647051268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.198 kcal (2) G-P(sol) polarization free energy of solvation -71.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds