Wall clock time and date at job start Mon Mar 30 2020 00:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46690 * 54.99871 * 4 3 2 6 6 C 1.52995 * 109.47028 * 294.99843 * 4 3 2 7 7 C 1.50698 * 109.47004 * 174.99522 * 4 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.09005 * 112.84860 * 43.80350 * 11 10 9 13 13 C 1.53785 * 113.61568 * 175.00089 * 11 10 9 14 14 C 1.53778 * 87.07976 * 139.98012 * 13 11 10 15 15 H 1.08996 * 113.61208 * 219.93259 * 14 13 11 16 16 N 1.46505 * 113.61223 * 89.11698 * 14 13 11 17 17 C 1.36937 * 119.99844 * 155.00055 * 16 14 13 18 18 H 1.08005 * 119.99873 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00026 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00017 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99907 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.46968 * 90.00684 * 21 19 17 23 23 H 1.48502 * 109.47057 * 210.00329 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00023 * 21 19 17 25 25 C 1.53776 * 87.08288 * 334.56599 * 14 13 11 26 26 H 1.08996 * 109.47584 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47064 * 300.00271 * 1 2 3 28 28 H 1.08999 * 109.47090 * 60.00078 * 1 2 3 29 29 H 1.08998 * 109.47220 * 239.99493 * 2 1 3 30 30 H 1.08999 * 109.47090 * 119.99921 * 2 1 3 31 31 H 1.08998 * 109.47393 * 59.99600 * 3 2 1 32 32 H 1.09007 * 109.46792 * 299.99694 * 3 2 1 33 33 H 1.09001 * 109.46983 * 179.97438 * 6 4 3 34 34 H 1.08995 * 109.47139 * 300.00141 * 6 4 3 35 35 H 1.09003 * 109.47199 * 59.99964 * 6 4 3 36 36 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 37 37 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 38 38 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 39 39 H 1.08997 * 113.61329 * 254.53183 * 13 11 10 40 40 H 1.08999 * 113.61478 * 25.34777 * 13 11 10 41 41 H 0.96992 * 119.99906 * 334.99418 * 16 14 13 42 42 H 0.96995 * 120.00137 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61844 * 270.88472 * 25 14 13 44 44 H 1.09007 * 113.61444 * 139.97790 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0794 0.8331 1.3083 7 6 4.0724 2.8579 -0.1233 8 8 3.2843 3.7763 -0.2037 9 7 5.3975 3.1032 -0.1437 10 6 5.8859 4.4785 -0.2703 11 6 7.4159 4.4781 -0.2746 12 1 7.8371 3.6930 -0.9026 13 6 8.0317 5.8647 -0.5258 14 6 9.0809 5.5049 0.5393 15 1 9.3361 6.3345 1.1985 16 7 10.2602 4.8266 -0.0043 17 6 11.4563 4.8961 0.6587 18 1 11.5304 5.4513 1.5822 19 6 12.5739 4.2540 0.1434 20 7 13.7234 4.3203 0.7809 21 14 12.4459 3.2943 -1.4542 22 1 12.7434 4.1942 -2.5973 23 1 13.4214 2.1748 -1.4386 24 1 11.0712 2.7510 -1.5965 25 6 8.0359 4.5443 1.1311 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 5.1694 0.8327 1.3085 34 1 3.7157 1.4227 2.1498 35 1 3.7160 -0.1907 1.3979 36 1 6.0278 2.3687 -0.0790 37 1 5.5200 4.9098 -1.2022 38 1 5.5252 5.0710 0.5705 39 1 8.4478 5.9829 -1.5263 40 1 7.3807 6.6902 -0.2380 41 1 10.1937 4.3283 -0.8338 42 1 14.5042 3.8713 0.4210 43 1 7.3867 5.0088 1.8732 44 1 8.4556 3.5965 1.4682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656187826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:19 Heat of formation + Delta-G solvation = -33.159865 kcal Electronic energy + Delta-G solvation = -20350.655004 eV Core-core repulsion = 17302.920588 eV Total energy + Delta-G solvation = -3047.734416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.11758 -38.75585 -36.23770 -34.75262 -33.30427 -32.23527 -30.65524 -27.70525 -26.87082 -25.20604 -24.27329 -23.23860 -21.79277 -21.23427 -19.97218 -18.55831 -17.70098 -17.05608 -16.19968 -15.89012 -15.19227 -15.04099 -14.45555 -14.33472 -14.22253 -13.75516 -13.56139 -13.24515 -12.89545 -12.71563 -12.54081 -12.47857 -12.16274 -12.07555 -11.61827 -11.48849 -11.39488 -11.23716 -11.10696 -10.94196 -10.80242 -10.53184 -10.28712 -10.15767 -9.78793 -9.66987 -9.51704 -9.04968 -8.93912 -7.33905 -5.83049 -3.19353 2.59348 3.14608 3.31198 3.34531 3.40294 4.44824 4.46779 4.52609 4.61597 4.85910 4.89982 4.92318 4.95870 4.99942 5.07203 5.23879 5.36470 5.37379 5.41677 5.48754 5.49937 5.54203 5.59804 5.67874 5.73545 5.79860 5.85029 5.86523 5.91647 6.03442 6.10232 6.11245 6.20882 6.35599 6.47453 6.59316 6.72139 6.86534 7.46821 7.94836 8.17973 8.36658 9.14318 9.86526 10.05808 11.35071 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.003214 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.705886 B = 8709.874743 C = 9154.607951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.146 4.146 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.130 3.870 11 C -0.123 4.123 12 H 0.089 0.911 13 C -0.149 4.149 14 C 0.172 3.828 15 H 0.071 0.929 16 N -0.730 5.730 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.278 1.278 25 C -0.166 4.166 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.401 0.599 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.833 -7.783 -1.979 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.114 0.886 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.424 6.424 9 N -0.376 5.376 10 C 0.007 3.993 11 C -0.142 4.142 12 H 0.107 0.893 13 C -0.188 4.188 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.370 5.370 17 C -0.377 4.377 18 H 0.110 0.890 19 C -0.191 4.191 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.207 4.207 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.154 -7.048 -1.872 24.275 hybrid contribution 0.401 -1.156 -1.165 1.690 sum -22.753 -8.205 -3.037 24.377 Atomic orbital electron populations 1.21761 0.95788 1.01459 1.01979 1.21607 0.96009 0.96695 1.02086 1.21425 0.92282 0.96579 1.03508 1.21351 0.97861 0.93565 1.00586 0.88648 1.21836 1.01376 1.01338 0.95821 1.20687 0.82272 0.91314 0.75772 1.90683 1.55420 1.46530 1.49740 1.46108 1.06976 1.10060 1.74494 1.21456 0.93843 0.82412 1.01580 1.22754 0.92135 0.99466 0.99867 0.89289 1.23462 0.98946 0.95370 1.01071 1.21002 0.85559 0.93803 0.93554 0.91059 1.42515 1.06475 1.61114 1.26900 1.19115 0.84984 1.27857 1.05699 0.89020 1.24685 0.95482 1.00453 0.98452 1.69695 1.00109 1.48051 1.40046 0.86555 0.76977 0.80170 0.84807 1.21011 1.21664 1.20431 1.23850 0.99744 1.02481 0.94598 0.92832 0.92694 0.92718 0.92049 0.91695 0.91311 0.91185 0.91972 0.92012 0.91222 0.76447 0.91915 0.91485 0.91456 0.89995 0.80536 0.92966 0.90958 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.87 5.69 -26.73 -0.15 -1.02 16 3 C -0.10 -0.89 4.03 -26.73 -0.11 -1.00 16 4 C -0.11 -0.99 2.72 -91.78 -0.25 -1.24 16 5 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.15 -1.10 8.84 37.16 0.33 -0.77 16 7 C 0.51 6.31 7.15 -10.99 -0.08 6.23 16 8 O -0.55 -8.77 15.92 5.55 0.09 -8.68 16 9 N -0.73 -8.29 5.45 -60.29 -0.33 -8.62 16 10 C 0.13 1.65 5.51 -4.04 -0.02 1.63 16 11 C -0.12 -1.70 3.63 -89.80 -0.33 -2.02 16 12 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 13 C -0.15 -2.20 7.39 -25.92 -0.19 -2.39 16 14 C 0.17 3.17 4.56 -67.12 -0.31 2.86 16 15 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 16 N -0.73 -16.67 5.11 -52.64 -0.27 -16.94 16 17 C -0.25 -6.81 10.45 -15.06 -0.16 -6.97 16 18 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -28.84 13.97 55.49 0.78 -28.06 16 21 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 25 C -0.17 -2.58 7.43 -25.92 -0.19 -2.77 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 33 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.43 6.56 -51.93 -0.34 0.08 16 36 H 0.40 3.89 7.89 -40.82 -0.32 3.57 16 37 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.07 0.89 7.84 -51.93 -0.41 0.49 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.36 8.09 5.76 -40.82 -0.24 7.85 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 44 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -31.98 351.92 -8.27 -40.25 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.94 Total: 7.91 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.18 Total: -8.04 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.18 Total: -53.62 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.98 -8.27 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656187826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.090 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds