Wall clock time and date at job start Mon Mar 30 2020 00:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46690 * 54.99871 * 4 3 2 6 6 C 1.52995 * 109.47028 * 294.99843 * 4 3 2 7 7 C 1.50698 * 109.47004 * 174.99522 * 4 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 4 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 H 1.09005 * 112.84860 * 43.80350 * 11 10 9 13 13 C 1.53785 * 113.61568 * 175.00089 * 11 10 9 14 14 C 1.53778 * 87.07976 * 139.98012 * 13 11 10 15 15 H 1.08996 * 113.61208 * 219.93259 * 14 13 11 16 16 N 1.46505 * 113.61223 * 89.11698 * 14 13 11 17 17 C 1.36937 * 119.99844 * 155.00055 * 16 14 13 18 18 H 1.08005 * 119.99873 * 359.97438 * 17 16 14 19 19 C 1.38810 * 120.00026 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00017 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99907 * 359.97438 * 19 17 16 22 22 H 1.48492 * 109.46968 * 90.00684 * 21 19 17 23 23 H 1.48502 * 109.47057 * 210.00329 * 21 19 17 24 24 H 1.48503 * 109.47099 * 330.00023 * 21 19 17 25 25 C 1.53776 * 87.08288 * 334.56599 * 14 13 11 26 26 H 1.08996 * 109.47584 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47064 * 300.00271 * 1 2 3 28 28 H 1.08999 * 109.47090 * 60.00078 * 1 2 3 29 29 H 1.08998 * 109.47220 * 239.99493 * 2 1 3 30 30 H 1.08999 * 109.47090 * 119.99921 * 2 1 3 31 31 H 1.08998 * 109.47393 * 59.99600 * 3 2 1 32 32 H 1.09007 * 109.46792 * 299.99694 * 3 2 1 33 33 H 1.09001 * 109.46983 * 179.97438 * 6 4 3 34 34 H 1.08995 * 109.47139 * 300.00141 * 6 4 3 35 35 H 1.09003 * 109.47199 * 59.99964 * 6 4 3 36 36 H 0.97001 * 120.00485 * 0.02562 * 9 7 4 37 37 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 38 38 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 39 39 H 1.08997 * 113.61329 * 254.53183 * 13 11 10 40 40 H 1.08999 * 113.61478 * 25.34777 * 13 11 10 41 41 H 0.96992 * 119.99906 * 334.99418 * 16 14 13 42 42 H 0.96995 * 120.00137 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61844 * 270.88472 * 25 14 13 44 44 H 1.09007 * 113.61444 * 139.97790 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0794 0.8331 1.3083 7 6 4.0724 2.8579 -0.1233 8 8 3.2843 3.7763 -0.2037 9 7 5.3975 3.1032 -0.1437 10 6 5.8859 4.4785 -0.2703 11 6 7.4159 4.4781 -0.2746 12 1 7.8371 3.6930 -0.9026 13 6 8.0317 5.8647 -0.5258 14 6 9.0809 5.5049 0.5393 15 1 9.3361 6.3345 1.1985 16 7 10.2602 4.8266 -0.0043 17 6 11.4563 4.8961 0.6587 18 1 11.5304 5.4513 1.5822 19 6 12.5739 4.2540 0.1434 20 7 13.7234 4.3203 0.7809 21 14 12.4459 3.2943 -1.4542 22 1 12.7434 4.1942 -2.5973 23 1 13.4214 2.1748 -1.4386 24 1 11.0712 2.7510 -1.5965 25 6 8.0359 4.5443 1.1311 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 5.1694 0.8327 1.3085 34 1 3.7157 1.4227 2.1498 35 1 3.7160 -0.1907 1.3979 36 1 6.0278 2.3687 -0.0790 37 1 5.5200 4.9098 -1.2022 38 1 5.5252 5.0710 0.5705 39 1 8.4478 5.9829 -1.5263 40 1 7.3807 6.6902 -0.2380 41 1 10.1937 4.3283 -0.8338 42 1 14.5042 3.8713 0.4210 43 1 7.3867 5.0088 1.8732 44 1 8.4556 3.5965 1.4682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656187826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:18 Heat of formation + Delta-G solvation = -53.901730 kcal Electronic energy + Delta-G solvation = -20351.554438 eV Core-core repulsion = 17302.920588 eV Total energy + Delta-G solvation = -3048.633851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.11150 -40.03508 -36.96347 -36.05085 -34.98796 -33.03227 -32.47316 -28.90239 -27.49293 -26.46905 -25.62918 -24.57515 -23.07111 -21.97268 -20.89448 -20.01983 -19.55230 -17.99390 -17.21714 -16.69528 -16.64491 -16.18214 -15.87293 -15.52864 -15.10889 -14.90047 -14.67335 -14.57472 -14.24524 -13.89154 -13.47562 -13.35099 -13.14914 -13.08596 -13.01682 -12.75327 -12.67056 -12.19429 -12.14081 -11.89291 -11.84352 -11.75576 -11.61856 -11.54480 -11.39982 -11.01471 -10.91623 -10.61936 -10.04611 -9.30036 -8.02703 -5.36587 1.37238 1.41905 1.48881 1.65497 2.24385 2.48200 3.27464 3.50786 3.64754 3.74069 3.79139 3.89139 3.97238 4.01044 4.26684 4.31064 4.36552 4.38372 4.41051 4.62449 4.69996 4.76935 4.81704 4.90948 4.92128 4.95448 4.96652 5.03078 5.08109 5.13425 5.22742 5.27074 5.30882 5.32697 5.44179 5.49807 5.52442 5.55699 5.80663 6.22551 6.57023 7.07688 7.26001 7.84305 8.03243 9.18801 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.003214 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.705886 B = 8709.874743 C = 9154.607951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.106 4.106 5 H 0.117 0.883 6 C -0.143 4.143 7 C 0.509 3.491 8 O -0.589 6.589 9 N -0.719 5.719 10 C 0.138 3.862 11 C -0.104 4.104 12 H 0.090 0.910 13 C -0.134 4.134 14 C 0.145 3.855 15 H 0.057 0.943 16 N -0.733 5.733 17 C -0.233 4.233 18 H 0.056 0.944 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.957 3.043 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.247 1.247 25 C -0.154 4.154 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.412 0.588 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.089 0.911 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.700 -9.436 -3.336 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.127 4.127 5 H 0.135 0.865 6 C -0.201 4.201 7 C 0.297 3.703 8 O -0.469 6.469 9 N -0.370 5.370 10 C 0.014 3.986 11 C -0.123 4.123 12 H 0.108 0.892 13 C -0.174 4.174 14 C 0.036 3.964 15 H 0.075 0.925 16 N -0.375 5.375 17 C -0.364 4.364 18 H 0.074 0.926 19 C -0.257 4.257 20 N -0.635 5.635 21 Si 0.784 3.216 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.172 1.172 25 C -0.194 4.194 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.248 0.752 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.078 -8.704 -3.226 26.741 hybrid contribution 0.939 -0.533 -0.635 1.252 sum -24.139 -9.237 -3.861 26.133 Atomic orbital electron populations 1.21782 0.95750 1.02066 1.01607 1.21584 0.96057 0.95205 1.03031 1.21386 0.92500 0.97725 1.01937 1.21385 0.97604 0.91532 1.02177 0.86545 1.21842 1.01726 1.02064 0.94442 1.21316 0.82004 0.92326 0.74618 1.90667 1.56430 1.48104 1.51729 1.46059 1.07115 1.09953 1.73890 1.21280 0.92747 0.83154 1.01424 1.22572 0.92742 0.98832 0.98150 0.89154 1.23364 0.97474 0.96839 0.99676 1.21335 0.85412 0.94171 0.95484 0.92516 1.42425 1.06218 1.61904 1.26951 1.19061 0.86913 1.25991 1.04390 0.92626 1.25538 0.95045 1.02456 1.02698 1.69886 1.01118 1.50037 1.42443 0.85385 0.78251 0.78246 0.79723 1.20630 1.22343 1.17184 1.23695 0.98718 1.00844 0.96139 0.91706 0.93075 0.93179 0.91100 0.90629 0.92843 0.92897 0.91373 0.93104 0.89299 0.75190 0.91942 0.91924 0.91395 0.87705 0.79938 0.93333 0.89260 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.39 5.69 30.59 0.17 -1.22 16 3 C -0.10 -1.61 4.03 30.59 0.12 -1.49 16 4 C -0.11 -1.63 2.72 -11.54 -0.03 -1.66 16 5 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 6 C -0.14 -1.77 8.84 71.98 0.64 -1.14 16 7 C 0.51 11.64 7.15 87.66 0.63 12.27 16 8 O -0.59 -18.48 15.92 -3.04 -0.05 -18.52 16 9 N -0.72 -14.63 5.45 -463.05 -2.52 -17.15 16 10 C 0.14 3.13 5.51 86.38 0.48 3.60 16 11 C -0.10 -2.56 3.63 -10.26 -0.04 -2.60 16 12 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 13 C -0.13 -3.61 7.39 31.12 0.23 -3.38 16 14 C 0.15 5.18 4.56 45.51 0.21 5.38 16 15 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 16 N -0.73 -32.78 5.11 -320.45 -1.64 -34.42 16 17 C -0.23 -13.02 10.45 84.03 0.88 -12.15 16 18 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.98 -62.61 13.97 21.65 0.30 -62.31 16 21 Si 0.96 44.26 27.74 68.60 1.90 46.16 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.25 -10.06 6.52 99.48 0.65 -9.41 16 25 C -0.15 -4.47 7.43 31.12 0.23 -4.24 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.72 6.56 -2.39 -0.02 0.71 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.05 7.96 -2.38 -0.02 1.03 16 33 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.78 6.56 -2.39 -0.02 0.76 16 36 H 0.41 6.69 7.89 -92.71 -0.73 5.96 16 37 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 38 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 2.37 8.10 -2.39 -0.02 2.35 16 41 H 0.37 15.55 5.76 -92.71 -0.53 15.01 16 42 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.09 2.31 7.90 -2.39 -0.02 2.30 16 44 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -70.76 351.92 2.34 -68.43 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.36 Total: 28.89 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 4.70 Total: -11.06 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -3.86 Total: -113.89 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -70.76 2.34 -68.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656187826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.524 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds