Wall clock time and date at job start Mon Mar 30 2020 00:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47130 * 2 1 4 4 C 1.52999 * 109.46892 * 119.99501 * 2 1 3 5 5 H 1.08999 * 115.56368 * 270.18966 * 4 2 1 6 6 C 1.52998 * 117.50081 * 124.49827 * 4 2 1 7 7 C 1.52994 * 60.00225 * 252.51058 * 6 4 2 8 8 H 1.09003 * 117.50106 * 252.48692 * 7 6 4 9 9 C 1.50700 * 117.49988 * 107.48749 * 7 6 4 10 10 O 1.21280 * 119.99815 * 339.00545 * 9 7 6 11 11 N 1.34777 * 120.00137 * 159.00407 * 9 7 6 12 12 C 1.46497 * 120.00039 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47186 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47024 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.46833 * 180.02562 * 14 13 12 16 16 C 1.46498 * 120.00524 * 89.99640 * 15 14 13 17 17 C 1.36943 * 119.99655 * 269.72026 * 15 14 13 18 18 H 1.08000 * 120.00001 * 336.62257 * 17 15 14 19 19 C 1.38813 * 119.99847 * 156.62489 * 17 15 14 20 20 N 1.31623 * 119.99907 * 349.47961 * 19 17 15 21 21 Si 1.86799 * 119.99931 * 169.48173 * 19 17 15 22 22 H 1.48500 * 109.47213 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47301 * 119.99747 * 21 19 17 24 24 H 1.48501 * 109.47268 * 239.99639 * 21 19 17 25 25 H 1.09003 * 109.46764 * 66.15881 * 1 2 3 26 26 H 1.08997 * 109.47131 * 186.15377 * 1 2 3 27 27 H 1.08997 * 109.47837 * 306.15965 * 1 2 3 28 28 H 1.08993 * 109.47741 * 239.99483 * 2 1 3 29 29 H 1.08998 * 109.46935 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46602 * 299.99965 * 3 2 1 31 31 H 1.09005 * 109.47021 * 59.99571 * 3 2 1 32 32 H 1.09007 * 117.50247 * 145.02055 * 6 4 2 33 33 H 1.09006 * 117.51795 * 359.97438 * 6 4 2 34 34 H 0.96995 * 119.99664 * 0.02562 * 11 9 7 35 35 H 1.08997 * 109.47320 * 59.99634 * 12 11 9 36 36 H 1.09003 * 109.46901 * 299.99824 * 12 11 9 37 37 H 1.08992 * 109.46995 * 59.99656 * 13 12 11 38 38 H 1.09003 * 109.46928 * 299.99649 * 13 12 11 39 39 H 1.08997 * 109.47560 * 59.99428 * 14 13 12 40 40 H 1.09003 * 109.46823 * 299.99519 * 14 13 12 41 41 H 1.08995 * 109.47650 * 274.48889 * 16 15 14 42 42 H 1.09008 * 109.46759 * 34.48301 * 16 15 14 43 43 H 1.08996 * 109.47176 * 154.48273 * 16 15 14 44 44 H 0.96998 * 119.99343 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 2.1936 -0.0918 2.1259 6 6 3.0001 -1.8947 1.0452 7 6 1.5576 -2.1540 1.4843 8 1 1.3940 -2.4676 2.5153 9 6 0.6166 -2.7470 0.4674 10 8 0.8651 -2.6532 -0.7159 11 7 -0.5011 -3.3816 0.8731 12 6 -1.4155 -3.9585 -0.1154 13 6 -2.5957 -4.6151 0.6037 14 6 -3.5504 -5.2182 -0.4286 15 7 -4.6806 -5.8463 0.2599 16 6 -5.8844 -5.0653 0.5551 17 6 -4.6141 -7.1652 0.6226 18 1 -3.9443 -7.8348 0.1036 19 6 -5.4077 -7.6413 1.6572 20 7 -6.0659 -6.7976 2.4236 21 14 -5.5413 -9.4794 1.9619 22 1 -4.7108 -10.2074 0.9692 23 1 -5.0613 -9.7902 3.3324 24 1 -6.9584 -9.9020 1.8261 25 1 -0.3633 0.4154 -0.9400 26 1 -0.3633 -1.0217 0.1102 27 1 -0.3635 0.6063 0.8297 28 1 1.8934 -0.5139 -0.8898 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.7855 -2.0374 1.7874 33 1 3.2684 -2.1536 0.0209 34 1 -0.7000 -3.4563 1.8195 35 1 -0.8872 -4.7071 -0.7058 36 1 -1.7838 -3.1709 -0.7729 37 1 -3.1238 -3.8662 1.1937 38 1 -2.2278 -5.4027 1.2614 39 1 -3.0219 -5.9671 -1.0184 40 1 -3.9183 -4.4309 -1.0866 41 1 -5.7509 -4.5340 1.4974 42 1 -6.0565 -4.3464 -0.2460 43 1 -6.7414 -5.7342 0.6334 44 1 -6.6201 -7.1304 3.1468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660352485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:28 Heat of formation + Delta-G solvation = -7.008560 kcal Electronic energy + Delta-G solvation = -20641.974218 eV Core-core repulsion = 17595.373808 eV Total energy + Delta-G solvation = -3046.600410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39106 -37.43722 -36.08957 -34.63145 -33.50004 -31.95698 -29.99779 -27.32129 -26.16305 -25.70430 -23.79816 -23.00875 -21.69613 -20.68772 -20.34412 -19.35390 -16.98050 -16.74786 -15.99981 -15.74685 -15.05861 -14.75241 -14.44595 -14.25434 -13.89811 -13.43523 -13.22112 -13.04985 -12.73846 -12.54280 -12.31451 -12.21793 -11.61656 -11.45357 -11.29154 -11.21337 -11.05507 -10.90950 -10.85322 -10.74545 -10.44144 -10.34104 -10.14994 -10.06249 -9.93822 -9.77706 -9.63399 -8.86484 -8.53196 -6.75431 -5.75468 -3.19813 2.50302 3.27391 3.36852 3.44020 3.46109 3.76987 4.38785 4.49243 4.62794 4.68746 4.86488 5.01492 5.13688 5.21583 5.29139 5.42239 5.44610 5.54768 5.55926 5.56304 5.70779 5.76098 5.83164 5.87227 5.91119 5.97391 6.06355 6.15025 6.21160 6.30932 6.35609 6.45797 6.67214 6.80390 6.84956 7.02855 7.39079 7.65690 7.69962 7.80756 8.35216 8.41704 9.23686 9.86759 10.36282 11.31357 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033923 B = 0.003217 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.212244 B = 8700.634457 C = 9031.729656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.069 4.069 3 C -0.143 4.143 4 C -0.113 4.113 5 H 0.111 0.889 6 C -0.145 4.145 7 C -0.195 4.195 8 H 0.118 0.882 9 C 0.545 3.455 10 O -0.546 6.546 11 N -0.725 5.725 12 C 0.121 3.879 13 C -0.149 4.149 14 C 0.156 3.844 15 N -0.602 5.602 16 C 0.162 3.838 17 C -0.252 4.252 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.909 5.909 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.401 0.599 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.038 0.962 41 H 0.014 0.986 42 H -0.007 1.007 43 H 0.061 0.939 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.052 13.436 -1.083 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 C -0.200 4.200 4 C -0.132 4.132 5 H 0.129 0.871 6 C -0.182 4.182 7 C -0.216 4.216 8 H 0.136 0.864 9 C 0.332 3.668 10 O -0.425 6.425 11 N -0.376 5.376 12 C -0.003 4.003 13 C -0.190 4.190 14 C 0.028 3.972 15 N -0.325 5.325 16 C 0.017 3.983 17 C -0.382 4.382 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.235 0.765 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.011 0.989 43 H 0.080 0.920 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.052 13.434 -1.821 20.257 hybrid contribution -0.273 -1.090 1.090 1.565 sum 14.779 12.344 -0.731 19.270 Atomic orbital electron populations 1.21977 0.94939 1.02484 1.01263 1.20738 0.95939 0.95448 0.96633 1.21816 1.00799 0.95721 1.01657 1.22448 1.01825 0.88594 1.00304 0.87137 1.23100 0.90500 1.01157 1.03470 1.22362 0.97654 1.01708 0.99905 0.86384 1.19404 0.81187 0.77338 0.88848 1.90683 1.74786 1.59340 1.17642 1.46148 1.23184 1.57224 1.10999 1.21493 0.90305 0.97218 0.91265 1.22527 0.95256 1.00190 1.01046 1.20711 0.88585 0.95184 0.92732 1.43977 1.11590 1.08683 1.68219 1.20804 0.89698 0.93371 0.94425 1.19295 1.22629 0.84587 1.11666 0.91365 1.25051 1.00863 0.97838 0.96094 1.70074 1.33627 1.32229 1.19531 0.86174 0.77496 0.85192 0.77636 1.20308 1.21745 1.21621 0.92794 0.91822 0.93200 0.89726 0.92729 0.92642 0.92840 0.88151 0.87573 0.76542 0.91866 0.92062 0.92204 0.91348 0.93646 0.94340 0.96723 0.98887 0.92041 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.69 37.16 0.32 -1.41 16 2 C -0.07 -0.72 2.34 -90.62 -0.21 -0.93 16 3 C -0.14 -1.18 9.16 37.16 0.34 -0.84 16 4 C -0.11 -1.06 5.22 -90.62 -0.47 -1.53 16 5 H 0.11 0.85 8.08 -51.93 -0.42 0.43 16 6 C -0.14 -1.35 9.69 -26.74 -0.26 -1.61 16 7 C -0.20 -2.04 6.08 -91.77 -0.56 -2.59 16 8 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 9 C 0.54 7.46 4.66 -10.99 -0.05 7.41 16 10 O -0.55 -9.09 13.96 5.56 0.08 -9.01 16 11 N -0.73 -9.74 5.48 -60.29 -0.33 -10.07 16 12 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 13 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 14 C 0.16 3.17 5.71 -4.05 -0.02 3.14 16 15 N -0.60 -15.17 2.92 -181.12 -0.53 -15.70 16 16 C 0.16 4.01 9.04 59.85 0.54 4.55 16 17 C -0.25 -6.91 9.66 -15.06 -0.15 -7.05 16 18 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 19 C 0.00 -0.02 5.09 -17.43 -0.09 -0.11 16 20 N -0.91 -26.33 10.67 55.49 0.59 -25.74 16 21 Si 0.90 21.77 29.57 -169.99 -5.03 16.74 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.85 4.35 -51.93 -0.23 0.63 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.05 6.97 -51.93 -0.36 0.69 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.11 1.14 7.72 -51.93 -0.40 0.74 16 34 H 0.40 4.67 8.47 -40.82 -0.35 4.32 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 40 H 0.04 0.72 7.93 -51.93 -0.41 0.31 16 41 H 0.01 0.38 7.87 -51.93 -0.41 -0.03 16 42 H -0.01 -0.16 7.96 -51.92 -0.41 -0.57 16 43 H 0.06 1.66 6.63 -51.93 -0.34 1.31 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -30.83 350.34 -8.66 -39.50 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.95 Total: 0.97 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.78 Total: -1.96 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.27 Total: -51.51 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.83 -8.66 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660352485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.487 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds